Wall clock time and date at job start Tue Mar 31 2020 16:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29026 * 124.91588 * 2 1 4 4 C 1.31775 * 117.12683 * 180.02562 * 3 2 1 5 5 C 1.50701 * 122.75210 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46833 * 305.01735 * 5 4 3 7 7 N 1.46503 * 109.47079 * 180.02562 * 6 5 4 8 8 C 1.34777 * 119.99813 * 180.02562 * 7 6 5 9 9 O 1.21573 * 120.00029 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00018 * 180.02562 * 8 7 6 11 11 C 1.39248 * 120.00407 * 185.78800 * 10 8 7 12 12 C 1.39681 * 119.56995 * 18.76828 * 11 10 8 13 13 C 1.38646 * 119.49286 * 180.02562 * 12 11 10 14 14 C 1.38360 * 118.67159 * 359.72559 * 13 12 11 15 15 C 1.40567 * 119.12760 * 0.53544 * 14 13 12 16 16 C 1.41335 * 119.78665 * 179.72895 * 15 14 13 17 17 H 1.07996 * 120.00106 * 8.66320 * 16 15 14 18 18 C 1.40026 * 119.99948 * 188.65820 * 16 15 14 19 19 N 1.30747 * 119.99730 * 195.96810 * 18 16 15 20 20 Si 1.86798 * 120.00021 * 15.96594 * 18 16 15 21 21 H 1.48500 * 109.47276 * 269.99741 * 20 18 16 22 22 H 1.48497 * 109.47183 * 29.99785 * 20 18 16 23 23 H 1.48501 * 109.47159 * 150.00195 * 20 18 16 24 24 N 1.31895 * 119.57654 * 198.78688 * 11 10 8 25 25 C 1.33644 * 114.49947 * 0.22835 * 4 3 2 26 26 S 1.70981 * 124.91800 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46808 * 90.00651 * 1 2 3 28 28 H 1.08996 * 109.46970 * 209.99693 * 1 2 3 29 29 H 1.08992 * 109.47129 * 330.00196 * 1 2 3 30 30 H 1.08998 * 109.47249 * 185.02249 * 5 4 3 31 31 H 1.08996 * 109.47126 * 65.01776 * 5 4 3 32 32 H 1.09004 * 109.47216 * 60.00158 * 6 5 4 33 33 H 1.09001 * 109.47087 * 300.00371 * 6 5 4 34 34 H 0.96991 * 119.99936 * 0.02562 * 7 6 5 35 35 H 0.96999 * 119.99891 * 5.78185 * 10 8 7 36 36 H 1.08004 * 120.25636 * 359.97438 * 12 11 10 37 37 H 1.08001 * 120.66691 * 179.97438 * 13 12 11 38 38 H 1.08002 * 120.43493 * 180.26318 * 14 13 12 39 39 H 0.96992 * 120.00510 * 354.92349 * 19 18 16 40 40 H 1.07998 * 126.03647 * 179.77625 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 4.5307 2.0247 -0.0012 6 6 4.2326 2.9500 -1.1826 7 7 5.1852 4.0630 -1.1836 8 6 5.1135 5.0105 -2.1395 9 8 4.2586 4.9412 -3.0011 10 7 5.9901 6.0341 -2.1408 11 6 5.8433 7.0755 -3.0534 12 6 4.6121 7.2714 -3.6835 13 6 4.4678 8.3085 -4.5923 14 6 5.5549 9.1266 -4.8441 15 6 6.7689 8.8744 -4.1819 16 6 7.8898 9.6978 -4.4330 17 1 7.7783 10.5975 -5.0200 18 6 9.1449 9.3473 -3.9205 19 7 10.1037 10.2350 -3.8754 20 14 9.4493 7.6114 -3.3014 21 1 9.1143 7.5352 -1.8567 22 1 8.5969 6.6594 -4.0580 23 1 10.8786 7.2595 -3.4973 24 7 6.8685 7.8640 -3.3120 25 6 3.9354 -0.4006 -0.0058 26 16 2.4857 -1.4020 0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 5.5448 1.6354 -0.0915 31 1 4.4374 2.5830 0.9303 32 1 3.2185 3.3393 -1.0923 33 1 4.3258 2.3915 -2.1140 34 1 5.8675 4.1180 -0.4964 35 1 6.7234 6.0455 -1.5059 36 1 3.7792 6.6195 -3.4651 37 1 3.5246 8.4769 -5.0907 38 1 5.4729 9.9455 -5.5435 39 1 9.9698 11.1138 -4.2634 40 1 4.9545 -0.7580 -0.0106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881149988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:28 Heat of formation + Delta-G solvation = 40.941602 kcal Electronic energy + Delta-G solvation = -24403.253285 eV Core-core repulsion = 20730.524829 eV Total energy + Delta-G solvation = -3672.728456 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.46574 -40.11307 -38.27842 -35.65094 -34.42539 -33.53276 -33.11228 -31.01051 -30.53709 -29.16658 -28.36696 -25.31818 -24.52402 -22.77223 -21.96835 -21.62907 -20.36963 -19.99169 -18.69909 -18.00919 -17.63661 -16.94837 -15.97242 -15.71289 -15.41237 -15.07297 -14.87687 -14.60568 -14.31746 -14.00222 -13.99848 -13.58009 -13.49141 -13.12733 -12.94758 -12.59677 -12.54578 -12.19282 -12.13050 -11.94025 -11.80211 -11.50545 -11.16181 -10.83913 -10.28220 -9.99931 -9.94480 -9.78254 -9.72982 -9.35798 -9.08609 -9.05998 -8.98720 -8.45561 -7.86004 -7.32552 -7.22460 -4.70562 0.32305 0.97168 1.33642 2.35737 2.45872 2.73564 2.79622 3.45769 3.49186 3.65748 3.66963 3.92519 4.30316 4.36526 4.52270 4.65093 4.65829 4.80004 4.85751 4.90354 5.03836 5.18495 5.24775 5.45452 5.59592 5.73843 5.76276 5.86381 5.93569 6.15520 6.37503 6.49124 6.60691 6.73861 6.95854 7.23680 7.38061 7.39922 7.48873 7.69153 7.82877 7.97321 8.25792 8.39066 8.69095 8.81409 9.50151 10.01644 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.024192 B = 0.002198 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.113585 B =12733.821222 C =13689.691253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.053 3.947 3 N -0.467 5.467 4 C 0.078 3.922 5 C -0.056 4.056 6 C 0.149 3.851 7 N -0.747 5.747 8 C 0.710 3.290 9 O -0.562 6.562 10 N -0.667 5.667 11 C 0.400 3.600 12 C -0.309 4.309 13 C -0.036 4.036 14 C -0.281 4.281 15 C 0.276 3.724 16 C -0.483 4.483 17 H 0.083 0.917 18 C 0.049 3.951 19 N -0.806 5.806 20 Si 1.144 2.856 21 H -0.289 1.289 22 H -0.280 1.280 23 H -0.328 1.328 24 N -0.597 5.597 25 C -0.257 4.257 26 S 0.113 5.887 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.403 0.597 36 H 0.141 0.859 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.284 0.716 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.537 -22.842 11.396 28.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.225 4.225 3 N -0.182 5.182 4 C -0.055 4.055 5 C -0.096 4.096 6 C 0.024 3.976 7 N -0.404 5.404 8 C 0.409 3.591 9 O -0.438 6.438 10 N -0.314 5.314 11 C 0.168 3.832 12 C -0.334 4.334 13 C -0.060 4.060 14 C -0.303 4.303 15 C 0.152 3.848 16 C -0.515 4.515 17 H 0.101 0.899 18 C -0.173 4.173 19 N -0.428 5.428 20 Si 0.978 3.022 21 H -0.216 1.216 22 H -0.207 1.207 23 H -0.260 1.260 24 N -0.322 5.322 25 C -0.396 4.396 26 S 0.367 5.633 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.230 0.770 35 H 0.238 0.762 36 H 0.158 0.842 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.095 0.905 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -11.918 -24.457 11.712 29.620 hybrid contribution -0.491 2.061 -0.573 2.195 sum -12.409 -22.396 11.139 27.922 Atomic orbital electron populations 1.20478 0.85010 1.04301 1.04187 1.27091 1.01907 0.90790 1.02714 1.66080 1.04424 1.31587 1.16119 1.19983 0.90020 0.93796 1.01652 1.20365 0.96351 0.92975 0.99935 1.21035 0.93191 0.85930 0.97459 1.45074 1.37360 1.26604 1.31399 1.15675 0.82054 0.79262 0.82081 1.90857 1.38061 1.76675 1.38225 1.42314 1.30739 1.21257 1.37113 1.17781 0.90222 0.86434 0.88715 1.21553 0.98148 1.05536 1.08170 1.20919 0.97002 0.93219 0.94903 1.21592 0.95313 1.05083 1.08362 1.18169 0.92927 0.87207 0.86519 1.20633 0.93174 1.07690 1.30020 0.89871 1.27645 0.91606 1.06650 0.91373 1.70613 1.36166 1.06196 1.29838 0.82120 0.70733 0.72024 0.77360 1.21592 1.20720 1.26050 1.66126 1.29155 1.11847 1.25062 1.26833 1.03315 0.95682 1.13805 1.83997 0.97905 1.12883 1.68471 0.89319 0.90072 0.89058 0.89359 0.89200 0.90417 0.91621 0.77025 0.76242 0.84205 0.87719 0.87777 0.90505 0.80423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.46 36.01 0.38 -0.04 16 2 C 0.05 0.45 7.39 -13.45 -0.10 0.35 16 3 N -0.47 -4.96 10.34 -8.05 -0.08 -5.05 16 4 C 0.08 0.73 6.08 -84.23 -0.51 0.21 16 5 C -0.06 -0.45 5.82 -27.88 -0.16 -0.61 16 6 C 0.15 1.70 5.58 -4.04 -0.02 1.67 16 7 N -0.75 -9.23 5.56 -65.23 -0.36 -9.59 16 8 C 0.71 12.59 8.40 -86.92 -0.73 11.86 16 9 O -0.56 -12.01 13.14 5.30 0.07 -11.94 16 10 N -0.67 -12.75 5.42 -15.79 -0.09 -12.84 16 11 C 0.40 9.50 7.51 -155.00 -1.16 8.33 16 12 C -0.31 -7.29 8.83 -38.89 -0.34 -7.63 16 13 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 14 C -0.28 -6.92 9.83 -38.66 -0.38 -7.30 16 15 C 0.28 7.42 6.27 -85.00 -0.53 6.89 16 16 C -0.48 -13.36 9.51 -37.73 -0.36 -13.71 16 17 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 18 C 0.05 1.34 5.51 -17.34 -0.10 1.24 16 19 N -0.81 -22.05 13.65 55.55 0.76 -21.29 16 20 Si 1.14 27.86 25.93 -169.99 -4.41 23.46 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -7.04 6.55 56.52 0.37 -6.67 16 23 H -0.33 -7.83 7.11 56.52 0.40 -7.43 16 24 N -0.60 -15.44 5.07 -10.26 -0.05 -15.49 16 25 C -0.26 -1.95 11.07 29.12 0.32 -1.63 16 26 S 0.11 0.77 23.18 -107.50 -2.49 -1.72 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.52 8.03 -51.93 -0.42 0.11 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.40 3.55 8.49 -40.82 -0.35 3.21 16 35 H 0.40 6.60 8.84 -40.82 -0.36 6.23 16 36 H 0.14 3.28 5.33 -52.50 -0.28 3.00 16 37 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 38 H 0.10 2.39 8.06 -52.49 -0.42 1.96 16 39 H 0.28 7.44 8.73 -40.82 -0.36 7.08 16 40 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -34.14 355.90 -10.21 -44.34 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.81 Total: 6.37 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -4.10 Total: -1.60 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: 0.17 Total: -64.26 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.07 Total: -11.94 kcal Atomic # 14 Polarization: 27.86 SS G_CDS: -4.41 Total: 23.46 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.49 Total: -1.72 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.14 -10.21 -44.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.284 kcal (2) G-P(sol) polarization free energy of solvation -34.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds