Wall clock time and date at job start Tue Mar 31 2020 16:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29026 * 124.91588 * 2 1 4 4 C 1.31775 * 117.12683 * 180.02562 * 3 2 1 5 5 C 1.50701 * 122.75210 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46833 * 305.01735 * 5 4 3 7 7 N 1.46503 * 109.47079 * 180.02562 * 6 5 4 8 8 C 1.34777 * 119.99813 * 180.02562 * 7 6 5 9 9 O 1.21573 * 120.00029 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00018 * 180.02562 * 8 7 6 11 11 C 1.39248 * 120.00407 * 185.78800 * 10 8 7 12 12 C 1.39681 * 119.56995 * 18.76828 * 11 10 8 13 13 C 1.38646 * 119.49286 * 180.02562 * 12 11 10 14 14 C 1.38360 * 118.67159 * 359.72559 * 13 12 11 15 15 C 1.40567 * 119.12760 * 0.53544 * 14 13 12 16 16 C 1.41335 * 119.78665 * 179.72895 * 15 14 13 17 17 H 1.07996 * 120.00106 * 8.66320 * 16 15 14 18 18 C 1.40026 * 119.99948 * 188.65820 * 16 15 14 19 19 N 1.30747 * 119.99730 * 195.96810 * 18 16 15 20 20 Si 1.86798 * 120.00021 * 15.96594 * 18 16 15 21 21 H 1.48500 * 109.47276 * 269.99741 * 20 18 16 22 22 H 1.48497 * 109.47183 * 29.99785 * 20 18 16 23 23 H 1.48501 * 109.47159 * 150.00195 * 20 18 16 24 24 N 1.31895 * 119.57654 * 198.78688 * 11 10 8 25 25 C 1.33644 * 114.49947 * 0.22835 * 4 3 2 26 26 S 1.70981 * 124.91800 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46808 * 90.00651 * 1 2 3 28 28 H 1.08996 * 109.46970 * 209.99693 * 1 2 3 29 29 H 1.08992 * 109.47129 * 330.00196 * 1 2 3 30 30 H 1.08998 * 109.47249 * 185.02249 * 5 4 3 31 31 H 1.08996 * 109.47126 * 65.01776 * 5 4 3 32 32 H 1.09004 * 109.47216 * 60.00158 * 6 5 4 33 33 H 1.09001 * 109.47087 * 300.00371 * 6 5 4 34 34 H 0.96991 * 119.99936 * 0.02562 * 7 6 5 35 35 H 0.96999 * 119.99891 * 5.78185 * 10 8 7 36 36 H 1.08004 * 120.25636 * 359.97438 * 12 11 10 37 37 H 1.08001 * 120.66691 * 179.97438 * 13 12 11 38 38 H 1.08002 * 120.43493 * 180.26318 * 14 13 12 39 39 H 0.96992 * 120.00510 * 354.92349 * 19 18 16 40 40 H 1.07998 * 126.03647 * 179.77625 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 4.5307 2.0247 -0.0012 6 6 4.2326 2.9500 -1.1826 7 7 5.1852 4.0630 -1.1836 8 6 5.1135 5.0105 -2.1395 9 8 4.2586 4.9412 -3.0011 10 7 5.9901 6.0341 -2.1408 11 6 5.8433 7.0755 -3.0534 12 6 4.6121 7.2714 -3.6835 13 6 4.4678 8.3085 -4.5923 14 6 5.5549 9.1266 -4.8441 15 6 6.7689 8.8744 -4.1819 16 6 7.8898 9.6978 -4.4330 17 1 7.7783 10.5975 -5.0200 18 6 9.1449 9.3473 -3.9205 19 7 10.1037 10.2350 -3.8754 20 14 9.4493 7.6114 -3.3014 21 1 9.1143 7.5352 -1.8567 22 1 8.5969 6.6594 -4.0580 23 1 10.8786 7.2595 -3.4973 24 7 6.8685 7.8640 -3.3120 25 6 3.9354 -0.4006 -0.0058 26 16 2.4857 -1.4020 0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 5.5448 1.6354 -0.0915 31 1 4.4374 2.5830 0.9303 32 1 3.2185 3.3393 -1.0923 33 1 4.3258 2.3915 -2.1140 34 1 5.8675 4.1180 -0.4964 35 1 6.7234 6.0455 -1.5059 36 1 3.7792 6.6195 -3.4651 37 1 3.5246 8.4769 -5.0907 38 1 5.4729 9.9455 -5.5435 39 1 9.9698 11.1138 -4.2634 40 1 4.9545 -0.7580 -0.0106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881149988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:27 Heat of formation + Delta-G solvation = 17.951154 kcal Electronic energy + Delta-G solvation = -24404.250226 eV Core-core repulsion = 20730.524829 eV Total energy + Delta-G solvation = -3673.725397 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.81507 -40.92766 -40.03175 -36.81628 -36.09504 -35.36789 -33.90790 -32.92791 -31.68165 -30.53343 -29.04158 -27.24764 -25.50210 -23.83586 -23.52200 -23.06375 -21.87668 -20.69468 -20.45106 -19.49903 -18.68411 -18.25579 -17.19942 -16.86434 -16.72022 -16.38301 -16.15798 -15.83454 -15.75437 -15.34240 -15.08619 -14.87305 -14.54925 -14.36672 -14.20699 -14.04921 -13.71929 -13.62169 -13.04843 -12.98693 -12.83347 -12.77840 -12.59030 -12.20726 -12.11902 -11.83980 -11.58703 -11.06634 -10.97816 -10.59738 -10.37762 -10.35767 -10.21793 -9.82026 -9.63466 -9.30378 -9.14061 -6.77424 -0.24047 0.44450 0.60514 0.76923 0.79892 1.37039 1.53583 1.67507 1.79574 1.99180 2.02819 2.42523 2.66445 3.01382 3.19506 3.60246 3.87936 4.01680 4.08581 4.11528 4.33090 4.41946 4.44369 4.55980 4.65316 4.66412 4.67018 4.72303 4.79925 4.91981 5.01668 5.06300 5.26474 5.34255 5.38008 5.40246 5.46507 5.70639 5.79816 5.94334 6.07317 6.43571 6.64140 6.80832 6.87349 7.38756 7.56293 7.94814 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.024192 B = 0.002198 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.113585 B =12733.821222 C =13689.691253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.035 3.965 3 N -0.505 5.505 4 C 0.052 3.948 5 C -0.044 4.044 6 C 0.154 3.846 7 N -0.720 5.720 8 C 0.708 3.292 9 O -0.600 6.600 10 N -0.662 5.662 11 C 0.393 3.607 12 C -0.310 4.310 13 C -0.030 4.030 14 C -0.297 4.297 15 C 0.259 3.741 16 C -0.512 4.512 17 H 0.068 0.932 18 C 0.020 3.980 19 N -0.825 5.825 20 Si 1.176 2.824 21 H -0.270 1.270 22 H -0.293 1.293 23 H -0.321 1.321 24 N -0.607 5.607 25 C -0.258 4.258 26 S 0.147 5.853 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.417 0.583 35 H 0.417 0.583 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.114 0.886 39 H 0.282 0.718 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.158 -25.483 12.837 31.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.243 4.243 3 N -0.222 5.222 4 C -0.080 4.080 5 C -0.085 4.085 6 C 0.030 3.970 7 N -0.377 5.377 8 C 0.408 3.592 9 O -0.479 6.479 10 N -0.310 5.310 11 C 0.160 3.840 12 C -0.334 4.334 13 C -0.054 4.054 14 C -0.319 4.319 15 C 0.134 3.866 16 C -0.545 4.545 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.448 5.448 20 Si 1.006 2.994 21 H -0.196 1.196 22 H -0.221 1.221 23 H -0.253 1.253 24 N -0.332 5.332 25 C -0.397 4.397 26 S 0.402 5.598 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.134 0.866 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.254 0.746 35 H 0.254 0.746 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.132 0.868 39 H 0.092 0.908 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -12.527 -27.129 13.224 32.676 hybrid contribution -0.506 2.721 -1.014 2.948 sum -13.033 -24.407 12.210 30.243 Atomic orbital electron populations 1.20602 0.83503 1.05181 1.04784 1.27568 1.03164 0.91212 1.02358 1.66103 1.05384 1.33117 1.17547 1.20176 0.89945 0.94742 1.03110 1.20322 0.97570 0.92149 0.98412 1.21029 0.91755 0.85600 0.98659 1.44883 1.37529 1.25183 1.30144 1.15842 0.81279 0.79547 0.82555 1.90821 1.39428 1.77567 1.40039 1.42211 1.31626 1.20601 1.36563 1.18074 0.89872 0.86917 0.89178 1.21852 0.98337 1.05379 1.07840 1.21304 0.97920 0.91998 0.94178 1.21759 0.95236 1.06054 1.08828 1.18369 0.93513 0.87660 0.87069 1.20634 0.94165 1.08115 1.31561 0.91335 1.28462 0.91462 1.08436 0.91342 1.70635 1.36479 1.06429 1.31249 0.81712 0.70603 0.69210 0.77865 1.19631 1.22113 1.25344 1.66129 1.30028 1.12001 1.25078 1.27188 1.04804 0.95362 1.12346 1.83847 0.96969 1.11557 1.67420 0.88775 0.87825 0.89568 0.86616 0.88349 0.92656 0.92888 0.74586 0.74619 0.83719 0.84135 0.86771 0.90762 0.78079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.46 71.24 0.75 -0.02 16 2 C 0.03 0.54 7.39 88.52 0.65 1.19 16 3 N -0.51 -10.32 10.34 -179.40 -1.86 -12.18 16 4 C 0.05 0.88 6.08 41.52 0.25 1.14 16 5 C -0.04 -0.61 5.82 29.85 0.17 -0.43 16 6 C 0.15 3.29 5.58 86.38 0.48 3.77 16 7 N -0.72 -16.14 5.56 -478.54 -2.66 -18.80 16 8 C 0.71 23.91 8.40 179.06 1.50 25.41 16 9 O -0.60 -25.01 13.14 -3.95 -0.05 -25.06 16 10 N -0.66 -24.06 5.42 -322.14 -1.75 -25.80 16 11 C 0.39 18.10 7.51 133.26 1.00 19.10 16 12 C -0.31 -14.13 8.83 22.72 0.20 -13.93 16 13 C -0.03 -1.31 10.15 22.40 0.23 -1.08 16 14 C -0.30 -14.43 9.83 22.87 0.22 -14.21 16 15 C 0.26 13.96 6.27 40.19 0.25 14.21 16 16 C -0.51 -28.92 9.51 23.47 0.22 -28.70 16 17 H 0.07 3.93 8.06 -2.91 -0.02 3.90 16 18 C 0.02 1.13 5.51 85.29 0.47 1.60 16 19 N -0.82 -45.77 13.65 21.84 0.30 -45.47 16 20 Si 1.18 55.93 25.93 68.60 1.78 57.71 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.29 -14.46 6.55 99.48 0.65 -13.81 16 23 H -0.32 -14.77 7.11 99.48 0.71 -14.07 16 24 N -0.61 -30.93 5.07 -186.37 -0.95 -31.88 16 25 C -0.26 -3.28 11.07 66.78 0.74 -2.54 16 26 S 0.15 1.70 23.18 -56.49 -1.31 0.40 16 27 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.12 0.93 8.03 -2.39 -0.02 0.92 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.46 8.08 -2.39 -0.02 1.44 16 33 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.42 6.10 8.49 -92.71 -0.79 5.31 16 35 H 0.42 12.62 8.84 -92.71 -0.82 11.80 16 36 H 0.15 6.57 5.33 -3.17 -0.02 6.55 16 37 H 0.14 5.08 8.06 -2.91 -0.02 5.06 16 38 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 39 H 0.28 15.17 8.73 -92.71 -0.81 14.36 16 40 H 0.20 1.40 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -74.27 355.90 0.06 -74.20 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -0.60 Total: 21.36 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 7.15 Total: 5.51 kcal Atomic # 7 Polarization: -127.22 SS G_CDS: -6.91 Total: -134.13 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.06 kcal Atomic # 14 Polarization: 55.93 SS G_CDS: 1.78 Total: 57.71 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -1.31 Total: 0.40 kcal Total: -74.27 0.06 -74.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.156 kcal (2) G-P(sol) polarization free energy of solvation -74.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds