Wall clock time and date at job start Tue Mar 31 2020 16:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50695 * 109.47259 * 2 1 4 4 C 1.33640 * 126.04020 * 89.98327 * 3 2 1 5 5 N 1.31785 * 114.49988 * 179.79094 * 4 3 2 6 6 C 1.29026 * 117.12703 * 0.47258 * 5 4 3 7 7 C 1.50692 * 124.91674 * 179.81410 * 6 5 4 8 8 N 1.46503 * 109.47114 * 89.69624 * 7 6 5 9 9 C 1.34784 * 119.99777 * 179.97438 * 8 7 6 10 10 O 1.21569 * 120.00075 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99810 * 179.97438 * 9 8 7 12 12 C 1.39244 * 119.99884 * 185.79278 * 11 9 8 13 13 C 1.39680 * 119.57925 * 18.77204 * 12 11 9 14 14 C 1.38641 * 119.49708 * 179.97438 * 13 12 11 15 15 C 1.38354 * 118.67146 * 359.73015 * 14 13 12 16 16 C 1.40573 * 119.12950 * 0.51201 * 15 14 13 17 17 C 1.41327 * 119.78618 * 179.75324 * 16 15 14 18 18 H 1.08001 * 120.00023 * 8.65547 * 17 16 15 19 19 C 1.40030 * 120.00016 * 188.66014 * 17 16 15 20 20 N 1.30743 * 120.00004 * 195.96340 * 19 17 16 21 21 Si 1.86800 * 119.99913 * 15.96271 * 19 17 16 22 22 H 1.48494 * 109.46996 * 269.99954 * 21 19 17 23 23 H 1.48506 * 109.46904 * 30.00034 * 21 19 17 24 24 H 1.48492 * 109.47131 * 149.99955 * 21 19 17 25 25 N 1.31903 * 119.57143 * 198.75141 * 12 11 9 26 26 S 1.70981 * 110.16392 * 359.54766 * 6 5 4 27 27 H 1.09003 * 109.47143 * 60.00036 * 1 2 3 28 28 H 1.09004 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47342 * 300.00289 * 1 2 3 30 30 H 1.09007 * 109.47189 * 239.99901 * 2 1 3 31 31 H 1.09003 * 109.47143 * 119.99964 * 2 1 3 32 32 H 1.08000 * 122.74725 * 0.03617 * 4 3 2 33 33 H 1.09000 * 109.47647 * 329.69645 * 7 6 5 34 34 H 1.09003 * 109.47204 * 209.69276 * 7 6 5 35 35 H 0.96993 * 120.00321 * 0.02562 * 8 7 6 36 36 H 0.97001 * 119.99723 * 5.79149 * 11 9 8 37 37 H 1.08007 * 120.24719 * 359.97438 * 13 12 11 38 38 H 1.08008 * 120.66254 * 179.97438 * 14 13 12 39 39 H 1.07998 * 120.43494 * 180.28819 * 15 14 13 40 40 H 0.97002 * 119.99686 * 354.92627 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2941 2.1622 1.0806 5 7 2.7287 3.3780 0.8170 6 6 2.8392 3.7067 -0.4258 7 6 3.3129 5.0474 -0.9246 8 7 4.7688 5.0219 -1.0859 9 6 5.4176 6.1187 -1.5249 10 8 4.7946 7.1293 -1.7866 11 7 6.7570 6.0953 -1.6729 12 6 7.4407 7.2607 -2.0097 13 6 6.8288 8.5006 -1.8120 14 6 7.5112 9.6599 -2.1475 15 6 8.7892 9.5512 -2.6663 16 6 9.3484 8.2741 -2.8462 17 6 10.6508 8.1469 -3.3800 18 1 11.2661 9.0237 -3.5176 19 6 11.1434 6.8839 -3.7307 20 7 12.4251 6.7127 -3.9243 21 14 9.9694 5.4435 -3.9218 22 1 9.8213 4.7493 -2.6176 23 1 8.6443 5.9413 -4.3710 24 1 10.5092 4.4952 -4.9289 25 7 8.6581 7.1794 -2.5109 26 16 2.3772 2.3983 -1.4248 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1641 1.7936 2.0874 33 1 3.0407 5.8197 -0.2052 34 1 2.8448 5.2640 -1.8848 35 1 5.2658 4.2154 -0.8775 36 1 7.2447 5.2667 -1.5447 37 1 5.8315 8.5559 -1.4010 38 1 7.0559 10.6285 -2.0030 39 1 9.3484 10.4359 -2.9330 40 1 13.0255 7.4741 -3.8976 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881152696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:53 Heat of formation + Delta-G solvation = 41.686960 kcal Electronic energy + Delta-G solvation = -24439.297415 eV Core-core repulsion = 20766.601281 eV Total energy + Delta-G solvation = -3672.696135 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.47672 -40.01139 -38.30397 -35.61592 -34.56405 -34.32503 -33.45444 -31.03544 -30.48010 -29.16975 -27.39431 -25.29996 -24.52251 -23.13196 -22.25283 -21.68540 -20.44271 -19.77073 -18.77573 -18.43123 -17.86441 -17.06563 -15.83704 -15.67557 -15.47179 -14.97341 -14.84706 -14.70568 -14.47441 -14.35358 -14.07038 -13.74800 -13.24008 -13.17332 -13.02182 -12.79460 -12.47174 -12.20398 -12.14009 -12.03934 -11.84195 -11.33242 -11.21522 -10.86958 -10.31203 -10.01010 -9.97728 -9.78163 -9.64297 -9.49125 -9.24877 -9.13984 -9.05321 -8.47841 -7.87967 -7.35668 -7.24293 -4.72306 0.19208 0.89200 1.33618 2.26903 2.43178 2.71760 2.84104 3.38507 3.48020 3.64034 3.69317 3.91109 4.26999 4.28741 4.35048 4.47869 4.61418 4.63434 4.73137 4.99093 5.11254 5.19936 5.33489 5.39153 5.50687 5.57855 5.64353 5.76690 5.86585 6.11428 6.17907 6.44063 6.58558 6.68387 6.87078 7.20131 7.32656 7.36085 7.47236 7.66434 7.79893 7.90860 8.20955 8.36543 8.64969 8.73344 9.47738 10.00128 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.002519 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.966281 B =11110.954211 C =12201.025148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.048 4.048 3 C -0.215 4.215 4 C 0.032 3.968 5 N -0.450 5.450 6 C 0.019 3.981 7 C 0.221 3.779 8 N -0.742 5.742 9 C 0.714 3.286 10 O -0.561 6.561 11 N -0.665 5.665 12 C 0.400 3.600 13 C -0.309 4.309 14 C -0.036 4.036 15 C -0.280 4.280 16 C 0.276 3.724 17 C -0.482 4.482 18 H 0.083 0.917 19 C 0.049 3.951 20 N -0.805 5.805 21 Si 1.144 2.856 22 H -0.289 1.289 23 H -0.280 1.280 24 H -0.327 1.327 25 N -0.597 5.597 26 S 0.150 5.850 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.176 0.824 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.398 0.602 36 H 0.404 0.596 37 H 0.141 0.859 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.034 -14.467 6.952 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 C -0.337 4.337 4 C -0.120 4.120 5 N -0.165 5.165 6 C -0.259 4.259 7 C 0.094 3.906 8 N -0.401 5.401 9 C 0.414 3.586 10 O -0.436 6.436 11 N -0.312 5.312 12 C 0.168 3.832 13 C -0.334 4.334 14 C -0.060 4.060 15 C -0.302 4.302 16 C 0.152 3.848 17 C -0.515 4.515 18 H 0.102 0.898 19 C -0.173 4.173 20 N -0.427 5.427 21 Si 0.977 3.023 22 H -0.216 1.216 23 H -0.207 1.207 24 H -0.260 1.260 25 N -0.322 5.322 26 S 0.404 5.596 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.193 0.807 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.232 0.768 36 H 0.239 0.761 37 H 0.158 0.842 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.093 -15.571 5.630 26.815 hybrid contribution 0.323 1.480 1.588 2.194 sum -20.769 -14.091 7.218 26.116 Atomic orbital electron populations 1.21808 0.93969 1.02322 1.02595 1.20036 0.96314 0.88651 1.03761 1.26197 1.09425 1.02704 0.95355 1.21733 1.01409 0.88589 1.00229 1.66286 1.14199 1.17377 1.18612 1.26904 1.05847 1.01408 0.91703 1.19507 0.79735 0.89552 1.01840 1.45014 1.07030 1.15115 1.72904 1.15572 0.81309 0.83340 0.78384 1.90865 1.66227 1.30628 1.55912 1.42277 1.05488 1.12226 1.71174 1.17767 0.89218 0.83833 0.92394 1.21538 1.04018 0.90544 1.17296 1.20915 0.93744 0.96869 0.94484 1.21597 0.97237 0.97639 1.13770 1.18163 0.91693 0.86143 0.88815 1.20640 0.97752 0.96642 1.36416 0.89845 1.27646 0.97693 1.02972 0.88978 1.70616 1.03696 1.35626 1.32783 0.82130 0.73213 0.71309 0.75651 1.21604 1.20678 1.26008 1.66123 1.08740 1.32933 1.24356 1.84168 1.59272 1.05532 1.10593 0.92384 0.91693 0.92181 0.90367 0.89502 0.80713 0.88259 0.89089 0.76757 0.76149 0.84165 0.87676 0.87756 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.89 37.15 0.37 -0.27 16 2 C -0.05 -0.23 6.47 -27.89 -0.18 -0.41 16 3 C -0.22 -1.57 5.85 -35.92 -0.21 -1.78 16 4 C 0.03 0.27 11.25 -19.18 -0.22 0.06 16 5 N -0.45 -4.88 10.54 -11.86 -0.13 -5.00 16 6 C 0.02 0.19 6.76 -13.46 -0.09 0.10 16 7 C 0.22 2.42 6.25 -5.20 -0.03 2.39 16 8 N -0.74 -9.27 5.55 -66.42 -0.37 -9.63 16 9 C 0.71 12.21 8.40 -86.91 -0.73 11.48 16 10 O -0.56 -11.26 13.14 5.30 0.07 -11.19 16 11 N -0.66 -12.51 5.42 -15.79 -0.09 -12.60 16 12 C 0.40 9.32 7.51 -155.00 -1.16 8.15 16 13 C -0.31 -7.11 8.83 -38.89 -0.34 -7.46 16 14 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 15 C -0.28 -6.79 9.83 -38.66 -0.38 -7.17 16 16 C 0.28 7.34 6.27 -85.00 -0.53 6.81 16 17 C -0.48 -13.23 9.51 -37.74 -0.36 -13.59 16 18 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 19 C 0.05 1.33 5.51 -17.34 -0.10 1.23 16 20 N -0.81 -21.92 13.65 55.55 0.76 -21.16 16 21 Si 1.14 27.69 25.93 -169.99 -4.41 23.29 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.95 6.55 56.52 0.37 -6.58 16 24 H -0.33 -7.78 7.11 56.52 0.40 -7.38 16 25 N -0.60 -15.26 5.07 -10.26 -0.05 -15.31 16 26 S 0.15 1.20 23.18 -107.50 -2.49 -1.30 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.40 4.17 8.48 -40.82 -0.35 3.83 16 36 H 0.40 6.62 8.84 -40.82 -0.36 6.26 16 37 H 0.14 3.17 5.33 -52.50 -0.28 2.89 16 38 H 0.11 2.01 8.06 -52.48 -0.42 1.58 16 39 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 40 H 0.28 7.41 8.73 -40.82 -0.36 7.05 16 LS Contribution 356.33 15.07 5.37 5.37 Total: -1.00 -32.29 356.33 -10.52 -42.81 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -4.82 Total: 6.39 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -4.37 Total: -1.67 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: 0.13 Total: -63.70 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.07 Total: -11.19 kcal Atomic # 14 Polarization: 27.69 SS G_CDS: -4.41 Total: 23.29 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.49 Total: -1.30 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.29 -10.52 -42.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.499 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds