Wall clock time and date at job start Tue Mar 31 2020 16:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50695 * 109.47259 * 2 1 4 4 C 1.33640 * 126.04020 * 89.98327 * 3 2 1 5 5 N 1.31785 * 114.49988 * 179.79094 * 4 3 2 6 6 C 1.29026 * 117.12703 * 0.47258 * 5 4 3 7 7 C 1.50692 * 124.91674 * 179.81410 * 6 5 4 8 8 N 1.46503 * 109.47114 * 89.69624 * 7 6 5 9 9 C 1.34784 * 119.99777 * 179.97438 * 8 7 6 10 10 O 1.21569 * 120.00075 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99810 * 179.97438 * 9 8 7 12 12 C 1.39244 * 119.99884 * 185.79278 * 11 9 8 13 13 C 1.39680 * 119.57925 * 18.77204 * 12 11 9 14 14 C 1.38641 * 119.49708 * 179.97438 * 13 12 11 15 15 C 1.38354 * 118.67146 * 359.73015 * 14 13 12 16 16 C 1.40573 * 119.12950 * 0.51201 * 15 14 13 17 17 C 1.41327 * 119.78618 * 179.75324 * 16 15 14 18 18 H 1.08001 * 120.00023 * 8.65547 * 17 16 15 19 19 C 1.40030 * 120.00016 * 188.66014 * 17 16 15 20 20 N 1.30743 * 120.00004 * 195.96340 * 19 17 16 21 21 Si 1.86800 * 119.99913 * 15.96271 * 19 17 16 22 22 H 1.48494 * 109.46996 * 269.99954 * 21 19 17 23 23 H 1.48506 * 109.46904 * 30.00034 * 21 19 17 24 24 H 1.48492 * 109.47131 * 149.99955 * 21 19 17 25 25 N 1.31903 * 119.57143 * 198.75141 * 12 11 9 26 26 S 1.70981 * 110.16392 * 359.54766 * 6 5 4 27 27 H 1.09003 * 109.47143 * 60.00036 * 1 2 3 28 28 H 1.09004 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47342 * 300.00289 * 1 2 3 30 30 H 1.09007 * 109.47189 * 239.99901 * 2 1 3 31 31 H 1.09003 * 109.47143 * 119.99964 * 2 1 3 32 32 H 1.08000 * 122.74725 * 0.03617 * 4 3 2 33 33 H 1.09000 * 109.47647 * 329.69645 * 7 6 5 34 34 H 1.09003 * 109.47204 * 209.69276 * 7 6 5 35 35 H 0.96993 * 120.00321 * 0.02562 * 8 7 6 36 36 H 0.97001 * 119.99723 * 5.79149 * 11 9 8 37 37 H 1.08007 * 120.24719 * 359.97438 * 13 12 11 38 38 H 1.08008 * 120.66254 * 179.97438 * 14 13 12 39 39 H 1.07998 * 120.43494 * 180.28819 * 15 14 13 40 40 H 0.97002 * 119.99686 * 354.92627 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2941 2.1622 1.0806 5 7 2.7287 3.3780 0.8170 6 6 2.8392 3.7067 -0.4258 7 6 3.3129 5.0474 -0.9246 8 7 4.7688 5.0219 -1.0859 9 6 5.4176 6.1187 -1.5249 10 8 4.7946 7.1293 -1.7866 11 7 6.7570 6.0953 -1.6729 12 6 7.4407 7.2607 -2.0097 13 6 6.8288 8.5006 -1.8120 14 6 7.5112 9.6599 -2.1475 15 6 8.7892 9.5512 -2.6663 16 6 9.3484 8.2741 -2.8462 17 6 10.6508 8.1469 -3.3800 18 1 11.2661 9.0237 -3.5176 19 6 11.1434 6.8839 -3.7307 20 7 12.4251 6.7127 -3.9243 21 14 9.9694 5.4435 -3.9218 22 1 9.8213 4.7493 -2.6176 23 1 8.6443 5.9413 -4.3710 24 1 10.5092 4.4952 -4.9289 25 7 8.6581 7.1794 -2.5109 26 16 2.3772 2.3983 -1.4248 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1641 1.7936 2.0874 33 1 3.0407 5.8197 -0.2052 34 1 2.8448 5.2640 -1.8848 35 1 5.2658 4.2154 -0.8775 36 1 7.2447 5.2667 -1.5447 37 1 5.8315 8.5559 -1.4010 38 1 7.0559 10.6285 -2.0030 39 1 9.3484 10.4359 -2.9330 40 1 13.0255 7.4741 -3.8976 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881152696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:52 Heat of formation + Delta-G solvation = 20.973995 kcal Electronic energy + Delta-G solvation = -24440.195597 eV Core-core repulsion = 20766.601281 eV Total energy + Delta-G solvation = -3673.594316 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.86093 -40.83108 -40.02098 -36.70238 -36.08598 -35.38878 -34.99219 -32.92223 -31.72213 -30.48606 -28.19518 -27.19654 -25.30270 -23.94350 -23.58183 -23.41327 -21.92184 -20.69973 -20.34527 -19.52244 -19.17584 -18.47043 -17.17393 -16.82986 -16.71944 -16.52179 -16.11103 -15.77432 -15.53340 -15.34231 -15.15428 -14.89760 -14.81527 -14.49335 -14.21334 -13.98803 -13.89374 -13.67677 -13.29762 -12.98215 -12.75108 -12.63818 -12.44269 -12.15566 -11.84518 -11.75008 -11.59549 -11.10467 -11.00681 -10.70041 -10.37557 -10.35872 -10.25255 -9.89064 -9.81788 -9.29941 -9.15025 -6.76908 -0.48029 0.25491 0.60668 0.69389 0.80907 1.28575 1.52967 1.66590 1.84462 1.96899 2.00725 2.41921 2.66374 2.92731 3.05680 3.60841 3.80792 3.88029 4.10145 4.11384 4.35261 4.38755 4.40627 4.50345 4.55994 4.68175 4.73293 4.76706 4.81169 5.04573 5.11001 5.15628 5.17880 5.35372 5.35823 5.39613 5.46223 5.64300 5.80235 5.94074 6.04708 6.43978 6.61220 6.66987 6.78438 7.30702 7.56257 7.95128 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.002519 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.966281 B =11110.954211 C =12201.025148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.049 4.049 3 C -0.202 4.202 4 C 0.014 3.986 5 N -0.474 5.474 6 C -0.002 4.002 7 C 0.223 3.777 8 N -0.721 5.721 9 C 0.716 3.284 10 O -0.590 6.590 11 N -0.662 5.662 12 C 0.391 3.609 13 C -0.307 4.307 14 C -0.029 4.029 15 C -0.295 4.295 16 C 0.259 3.741 17 C -0.513 4.513 18 H 0.068 0.932 19 C 0.021 3.979 20 N -0.826 5.826 21 Si 1.175 2.825 22 H -0.273 1.273 23 H -0.290 1.290 24 H -0.322 1.322 25 N -0.608 5.608 26 S 0.173 5.827 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.193 0.807 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.411 0.589 36 H 0.415 0.585 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.114 0.886 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.458 -16.303 7.750 29.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 C -0.324 4.324 4 C -0.137 4.137 5 N -0.189 5.189 6 C -0.278 4.278 7 C 0.096 3.904 8 N -0.379 5.379 9 C 0.416 3.584 10 O -0.468 6.468 11 N -0.310 5.310 12 C 0.159 3.841 13 C -0.331 4.331 14 C -0.053 4.053 15 C -0.318 4.318 16 C 0.134 3.866 17 C -0.545 4.545 18 H 0.087 0.913 19 C -0.197 4.197 20 N -0.449 5.449 21 Si 1.006 2.994 22 H -0.200 1.200 23 H -0.218 1.218 24 H -0.254 1.254 25 N -0.333 5.333 26 S 0.427 5.573 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.210 0.790 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.247 0.753 36 H 0.252 0.748 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.132 0.868 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.534 -17.455 6.459 30.004 hybrid contribution 0.826 2.028 1.429 2.614 sum -22.708 -15.428 7.888 28.564 Atomic orbital electron populations 1.21803 0.93458 1.03159 1.02143 1.20192 0.96620 0.87102 1.04957 1.26582 1.07631 1.03527 0.94640 1.22030 1.02057 0.88162 1.01464 1.66261 1.14705 1.18668 1.19289 1.26619 1.07458 1.01616 0.92132 1.19538 0.78378 0.90391 1.02117 1.44873 1.07797 1.14161 1.71031 1.15626 0.80588 0.83962 0.78195 1.90830 1.66582 1.32144 1.57263 1.42204 1.06149 1.11542 1.71112 1.18065 0.88789 0.85590 0.91685 1.21870 1.04251 0.90806 1.16186 1.21315 0.92804 0.98503 0.92691 1.21764 0.98289 0.97221 1.14500 1.18354 0.91751 0.87523 0.88938 1.20634 0.98686 0.96480 1.38739 0.91333 1.28440 0.98268 1.04442 0.88536 1.70639 1.03950 1.35572 1.34732 0.81719 0.71446 0.69966 0.76312 1.19964 1.21842 1.25380 1.66111 1.09681 1.32834 1.24724 1.84078 1.58447 1.04489 1.10247 0.93039 0.90263 0.92451 0.89547 0.87922 0.79025 0.89129 0.88311 0.75316 0.74804 0.83321 0.83974 0.86797 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 71.98 0.71 -0.17 16 2 C -0.05 -0.32 6.47 29.84 0.19 -0.13 16 3 C -0.20 -2.46 5.85 24.64 0.14 -2.32 16 4 C 0.01 0.21 11.25 83.66 0.94 1.15 16 5 N -0.47 -9.58 10.54 -191.45 -2.02 -11.60 16 6 C 0.00 -0.04 6.76 88.52 0.60 0.56 16 7 C 0.22 4.57 6.25 85.63 0.54 5.10 16 8 N -0.72 -16.71 5.55 -482.31 -2.68 -19.39 16 9 C 0.72 23.27 8.40 179.05 1.50 24.78 16 10 O -0.59 -22.79 13.14 -3.93 -0.05 -22.84 16 11 N -0.66 -23.81 5.42 -322.13 -1.75 -25.56 16 12 C 0.39 17.72 7.51 133.26 1.00 18.72 16 13 C -0.31 -13.55 8.83 22.71 0.20 -13.35 16 14 C -0.03 -1.23 10.15 22.39 0.23 -1.01 16 15 C -0.30 -14.15 9.83 22.87 0.22 -13.92 16 16 C 0.26 13.84 6.27 40.19 0.25 14.09 16 17 C -0.51 -28.82 9.51 23.46 0.22 -28.60 16 18 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 19 C 0.02 1.13 5.51 85.29 0.47 1.60 16 20 N -0.83 -45.83 13.65 21.84 0.30 -45.53 16 21 Si 1.18 55.95 25.93 68.60 1.78 57.73 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.29 -14.22 6.55 99.48 0.65 -13.57 16 24 H -0.32 -14.82 7.11 99.48 0.71 -14.11 16 25 N -0.61 -30.71 5.07 -186.38 -0.95 -31.66 16 26 S 0.17 2.40 23.18 -56.49 -1.31 1.09 16 27 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.10 0.41 8.14 -2.39 -0.02 0.40 16 32 H 0.19 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.10 1.88 8.14 -2.39 -0.02 1.87 16 35 H 0.41 7.72 8.48 -92.71 -0.79 6.94 16 36 H 0.42 12.82 8.84 -92.71 -0.82 12.01 16 37 H 0.15 6.41 5.33 -3.21 -0.02 6.40 16 38 H 0.14 4.95 8.06 -2.91 -0.02 4.93 16 39 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 40 H 0.28 15.17 8.73 -92.71 -0.81 14.36 16 Total: -1.00 -68.98 356.33 -0.04 -69.02 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -0.60 Total: 22.21 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 7.23 Total: 6.51 kcal Atomic # 7 Polarization: -126.64 SS G_CDS: -7.09 Total: -133.73 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.05 Total: -22.84 kcal Atomic # 14 Polarization: 55.95 SS G_CDS: 1.78 Total: 57.73 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.31 Total: 1.09 kcal Total: -68.98 -0.04 -69.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.998 kcal (2) G-P(sol) polarization free energy of solvation -68.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds