Wall clock time and date at job start Tue Mar 31 2020 17:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47465 * 2 1 4 4 O 1.42905 * 109.47038 * 240.00414 * 2 1 3 5 5 C 1.42894 * 114.00211 * 90.00278 * 4 2 1 6 6 C 1.50703 * 109.47465 * 179.97438 * 5 4 2 7 7 C 1.38648 * 120.78867 * 269.71704 * 6 5 4 8 8 C 1.38203 * 119.16214 * 179.79066 * 7 6 5 9 9 N 1.31874 * 120.76288 * 0.49734 * 8 7 6 10 10 C 1.31871 * 121.72607 * 359.73031 * 9 8 7 11 11 C 1.38210 * 120.76374 * 0.03056 * 10 9 8 12 12 C 1.50703 * 109.47165 * 120.00342 * 2 1 3 13 13 O 1.21277 * 119.99605 * 115.00222 * 12 2 1 14 14 N 1.34773 * 119.99847 * 294.99914 * 12 2 1 15 15 C 1.46496 * 119.99909 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.47459 * 35.00135 * 15 14 12 17 17 C 1.50697 * 109.47428 * 154.99906 * 15 14 12 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 15 14 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 15 14 20 20 N 1.31510 * 119.99600 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 120.00227 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46909 * 90.00072 * 21 19 17 23 23 H 1.48503 * 109.46868 * 209.99959 * 21 19 17 24 24 H 1.48495 * 109.46964 * 330.00013 * 21 19 17 25 25 C 1.53006 * 109.46995 * 275.00159 * 15 14 12 26 26 F 1.39900 * 109.46764 * 299.99774 * 25 15 14 27 27 F 1.39897 * 109.47129 * 59.99752 * 25 15 14 28 28 F 1.39903 * 109.46814 * 180.02562 * 25 15 14 29 29 H 1.09000 * 109.46983 * 299.99828 * 1 2 3 30 30 H 1.09000 * 109.47221 * 59.99717 * 1 2 3 31 31 H 1.08999 * 109.47583 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46913 * 300.00028 * 5 4 2 33 33 H 1.09001 * 109.47756 * 59.99712 * 5 4 2 34 34 H 1.08003 * 120.41935 * 0.02562 * 7 6 5 35 35 H 1.07994 * 119.61984 * 180.20417 * 8 7 6 36 36 H 1.07995 * 119.61831 * 180.02562 * 10 9 8 37 37 H 1.07997 * 120.41912 * 180.02562 * 11 10 9 38 38 H 0.97003 * 120.00265 * 359.97438 * 14 12 2 39 39 H 0.97006 * 120.00212 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2001 0.1830 -2.2941 6 6 2.7014 -0.6280 -3.4611 7 6 4.0605 -0.8063 -3.6699 8 6 4.4830 -1.5601 -4.7484 9 7 3.6107 -2.0980 -5.5785 10 6 2.3113 -1.9455 -5.4135 11 6 1.8147 -1.2089 -4.3548 12 6 2.0323 -0.7105 1.2304 13 8 2.6529 -1.7467 1.1213 14 7 1.7919 -0.1943 2.4520 15 6 2.2807 -0.8847 3.6480 16 1 3.2410 -1.3522 3.4308 17 6 2.4480 0.1090 4.7685 18 1 2.2132 1.1506 4.6061 19 6 2.8997 -0.3116 6.0014 20 7 3.1851 -1.5801 6.1993 21 14 3.1064 0.9201 7.3906 22 1 1.8411 1.0124 8.1625 23 1 4.2024 0.4746 8.2881 24 1 3.4398 2.2522 6.8254 25 6 1.2733 -1.9584 4.0646 26 9 0.0408 -1.3582 4.3436 27 9 1.1181 -2.8808 3.0244 28 9 1.7399 -2.6172 5.2072 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2537 0.6548 -2.5588 33 1 2.9319 0.9514 -2.0450 34 1 4.7798 -0.3648 -2.9960 35 1 5.5397 -1.7065 -4.9161 36 1 1.6273 -2.4015 -6.1139 37 1 0.7494 -1.0880 -4.2248 38 1 1.2958 0.6347 2.5392 39 1 3.5033 -1.8761 7.0666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928804231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:10 Heat of formation + Delta-G solvation = -181.410765 kcal Electronic energy + Delta-G solvation = -28875.268549 eV Core-core repulsion = 24175.995809 eV Total energy + Delta-G solvation = -4699.272741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.37785 -46.03285 -45.64103 -40.37561 -39.46025 -37.56619 -34.68614 -33.60443 -32.70632 -31.39876 -31.18999 -28.26480 -27.04750 -24.68405 -24.06376 -23.64862 -22.19115 -21.48152 -19.88020 -17.90277 -17.31522 -16.97264 -16.74580 -16.65119 -16.58311 -16.38389 -15.80183 -15.56527 -15.09875 -14.92870 -14.53439 -14.09756 -13.93513 -13.76203 -13.49092 -13.03781 -12.95181 -12.78234 -12.53770 -12.42890 -12.35549 -12.31411 -12.08378 -12.01728 -11.84894 -11.72252 -11.30188 -11.19384 -10.93045 -10.82332 -10.44337 -10.01253 -9.89781 -9.71043 -9.68258 -9.33008 -9.06281 -8.77607 -8.33136 -6.27918 -4.52719 0.94150 0.95899 3.08193 3.13613 3.16010 3.22570 3.24764 3.67674 4.05191 4.17808 4.28041 4.48288 4.50102 4.57356 4.82707 4.86232 4.88833 4.92886 5.02740 5.10756 5.11793 5.18970 5.42255 5.56724 5.59044 5.64412 5.75728 5.81175 5.83752 6.08430 6.12360 6.17662 6.49121 6.84426 6.95044 7.12888 7.41557 7.58180 7.76698 8.23674 8.44832 8.81435 9.15376 10.63606 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.021385 B = 0.002768 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.000509 B =10111.679382 C =10327.769370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.072 3.928 3 H 0.086 0.914 4 O -0.347 6.347 5 C 0.097 3.903 6 C -0.041 4.041 7 C -0.149 4.149 8 C 0.095 3.905 9 N -0.484 5.484 10 C 0.094 3.906 11 C -0.152 4.152 12 C 0.505 3.495 13 O -0.513 6.513 14 N -0.709 5.709 15 C 0.247 3.753 16 H 0.085 0.915 17 C -0.554 4.554 18 H 0.078 0.922 19 C 0.065 3.935 20 N -0.838 5.838 21 Si 0.916 3.084 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.270 1.270 25 C 0.416 3.584 26 F -0.209 7.209 27 F -0.217 7.217 28 F -0.137 7.137 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.138 0.862 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.136 0.864 38 H 0.398 0.602 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.500 6.535 -15.806 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.010 3.990 3 H 0.103 0.897 4 O -0.265 6.265 5 C 0.020 3.980 6 C -0.050 4.050 7 C -0.168 4.168 8 C -0.061 4.061 9 N -0.194 5.194 10 C -0.063 4.063 11 C -0.172 4.172 12 C 0.289 3.711 13 O -0.388 6.388 14 N -0.361 5.361 15 C 0.141 3.859 16 H 0.103 0.897 17 C -0.591 4.591 18 H 0.096 0.904 19 C -0.144 4.144 20 N -0.471 5.471 21 Si 0.742 3.258 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.195 1.195 25 C 0.360 3.640 26 F -0.191 7.191 27 F -0.199 7.199 28 F -0.118 7.118 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.156 0.844 35 H 0.175 0.825 36 H 0.174 0.826 37 H 0.154 0.846 38 H 0.232 0.768 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.632 4.894 -16.434 17.348 hybrid contribution -0.797 1.473 1.694 2.383 sum -3.429 6.368 -14.740 16.419 Atomic orbital electron populations 1.22225 0.93611 1.04033 1.02900 1.21966 0.95083 0.96283 0.85650 0.89658 1.88147 1.86629 1.33328 1.18405 1.21406 0.99982 0.91736 0.84857 1.19993 0.93687 0.96623 0.94661 1.22136 0.95940 0.99789 0.98975 1.22776 0.99707 0.93086 0.90548 1.67661 1.03396 1.19613 1.28698 1.22755 0.91978 0.95450 0.96134 1.22081 1.01007 0.98286 0.95785 1.20239 0.80648 0.85881 0.84343 1.90732 1.39084 1.22674 1.86267 1.46001 1.57411 1.27415 1.05258 1.19733 0.92139 0.90627 0.83382 0.89702 1.20862 1.49000 0.94358 0.94831 0.90413 1.25090 0.94477 0.95813 0.99033 1.70401 1.38649 1.13638 1.24456 0.86204 0.78115 0.80605 0.80863 1.20193 1.20771 1.19479 1.23130 0.81603 0.83575 0.75669 1.92985 1.47927 1.84113 1.94102 1.93078 1.96234 1.70319 1.60260 1.93407 1.86883 1.82331 1.49139 0.90558 0.91604 0.90954 0.91828 0.91761 0.84447 0.82533 0.82638 0.84620 0.76807 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.48 37.15 0.35 -1.60 16 2 C 0.07 1.00 3.13 -27.88 -0.09 0.91 16 3 H 0.09 0.92 7.79 -51.93 -0.40 0.51 16 4 O -0.35 -5.19 9.51 -55.09 -0.52 -5.72 16 5 C 0.10 1.01 5.92 36.01 0.21 1.23 16 6 C -0.04 -0.46 5.55 -104.32 -0.58 -1.04 16 7 C -0.15 -1.59 9.82 -39.44 -0.39 -1.98 16 8 C 0.10 1.01 11.18 -17.55 -0.20 0.82 16 9 N -0.48 -5.72 10.36 -13.25 -0.14 -5.85 16 10 C 0.09 0.95 11.18 -17.55 -0.20 0.75 16 11 C -0.15 -1.51 9.82 -39.44 -0.39 -1.90 16 12 C 0.51 9.81 6.71 -10.99 -0.07 9.74 16 13 O -0.51 -12.44 15.08 -14.30 -0.22 -12.65 16 14 N -0.71 -13.89 4.95 -54.93 -0.27 -14.16 16 15 C 0.25 6.01 2.21 -69.08 -0.15 5.85 16 16 H 0.09 2.34 7.58 -51.93 -0.39 1.94 16 17 C -0.55 -13.75 8.47 -34.44 -0.29 -14.04 16 18 H 0.08 1.80 7.74 -52.49 -0.41 1.39 16 19 C 0.06 1.66 5.20 -17.82 -0.09 1.57 16 20 N -0.84 -22.73 9.50 55.43 0.53 -22.21 16 21 Si 0.92 19.67 29.54 -169.99 -5.02 14.64 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 C 0.42 10.59 2.81 37.16 0.10 10.69 16 26 F -0.21 -5.06 16.94 2.25 0.04 -5.02 16 27 F -0.22 -5.54 15.68 2.25 0.04 -5.51 16 28 F -0.14 -3.76 12.91 2.25 0.03 -3.73 16 29 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 30 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.51 7.83 -51.93 -0.41 0.10 16 33 H 0.06 0.58 8.04 -51.93 -0.42 0.16 16 34 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.40 6.47 8.32 -40.82 -0.34 6.13 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 349.03 15.07 5.26 5.26 Total: -1.00 -32.97 349.03 -6.49 -39.46 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.44 Total: 4.49 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -1.77 Total: 11.00 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.12 Total: -42.22 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.74 Total: -18.37 kcal Atomic # 9 Polarization: -14.37 SS G_CDS: 0.10 Total: -14.26 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.97 -6.49 -39.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.948 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds