Wall clock time and date at job start Tue Mar 31 2020 17:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47465 * 2 1 4 4 O 1.42905 * 109.47038 * 240.00414 * 2 1 3 5 5 C 1.42894 * 114.00211 * 90.00278 * 4 2 1 6 6 C 1.50703 * 109.47465 * 179.97438 * 5 4 2 7 7 C 1.38648 * 120.78867 * 269.71704 * 6 5 4 8 8 C 1.38203 * 119.16214 * 179.79066 * 7 6 5 9 9 N 1.31874 * 120.76288 * 0.49734 * 8 7 6 10 10 C 1.31871 * 121.72607 * 359.73031 * 9 8 7 11 11 C 1.38210 * 120.76374 * 0.03056 * 10 9 8 12 12 C 1.50703 * 109.47165 * 120.00342 * 2 1 3 13 13 O 1.21277 * 119.99605 * 115.00222 * 12 2 1 14 14 N 1.34773 * 119.99847 * 294.99914 * 12 2 1 15 15 C 1.46496 * 119.99909 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.47459 * 35.00135 * 15 14 12 17 17 C 1.50697 * 109.47428 * 154.99906 * 15 14 12 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 15 14 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 15 14 20 20 N 1.31510 * 119.99600 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 120.00227 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46909 * 90.00072 * 21 19 17 23 23 H 1.48503 * 109.46868 * 209.99959 * 21 19 17 24 24 H 1.48495 * 109.46964 * 330.00013 * 21 19 17 25 25 C 1.53006 * 109.46995 * 275.00159 * 15 14 12 26 26 F 1.39900 * 109.46764 * 299.99774 * 25 15 14 27 27 F 1.39897 * 109.47129 * 59.99752 * 25 15 14 28 28 F 1.39903 * 109.46814 * 180.02562 * 25 15 14 29 29 H 1.09000 * 109.46983 * 299.99828 * 1 2 3 30 30 H 1.09000 * 109.47221 * 59.99717 * 1 2 3 31 31 H 1.08999 * 109.47583 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46913 * 300.00028 * 5 4 2 33 33 H 1.09001 * 109.47756 * 59.99712 * 5 4 2 34 34 H 1.08003 * 120.41935 * 0.02562 * 7 6 5 35 35 H 1.07994 * 119.61984 * 180.20417 * 8 7 6 36 36 H 1.07995 * 119.61831 * 180.02562 * 10 9 8 37 37 H 1.07997 * 120.41912 * 180.02562 * 11 10 9 38 38 H 0.97003 * 120.00265 * 359.97438 * 14 12 2 39 39 H 0.97006 * 120.00212 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2001 0.1830 -2.2941 6 6 2.7014 -0.6280 -3.4611 7 6 4.0605 -0.8063 -3.6699 8 6 4.4830 -1.5601 -4.7484 9 7 3.6107 -2.0980 -5.5785 10 6 2.3113 -1.9455 -5.4135 11 6 1.8147 -1.2089 -4.3548 12 6 2.0323 -0.7105 1.2304 13 8 2.6529 -1.7467 1.1213 14 7 1.7919 -0.1943 2.4520 15 6 2.2807 -0.8847 3.6480 16 1 3.2410 -1.3522 3.4308 17 6 2.4480 0.1090 4.7685 18 1 2.2132 1.1506 4.6061 19 6 2.8997 -0.3116 6.0014 20 7 3.1851 -1.5801 6.1993 21 14 3.1064 0.9201 7.3906 22 1 1.8411 1.0124 8.1625 23 1 4.2024 0.4746 8.2881 24 1 3.4398 2.2522 6.8254 25 6 1.2733 -1.9584 4.0646 26 9 0.0408 -1.3582 4.3436 27 9 1.1181 -2.8808 3.0244 28 9 1.7399 -2.6172 5.2072 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2537 0.6548 -2.5588 33 1 2.9319 0.9514 -2.0450 34 1 4.7798 -0.3648 -2.9960 35 1 5.5397 -1.7065 -4.9161 36 1 1.6273 -2.4015 -6.1139 37 1 0.7494 -1.0880 -4.2248 38 1 1.2958 0.6347 2.5392 39 1 3.5033 -1.8761 7.0666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:09 Heat of formation + Delta-G solvation = -203.158309 kcal Electronic energy + Delta-G solvation = -28876.211593 eV Core-core repulsion = 24175.995809 eV Total energy + Delta-G solvation = -4700.215785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.43281 -48.06873 -47.74256 -41.21284 -40.81691 -38.73671 -36.48343 -34.66581 -34.31051 -32.35564 -32.14337 -29.98714 -27.85650 -26.62863 -25.35026 -24.41159 -23.29301 -22.93128 -21.47858 -19.48972 -18.92760 -18.67695 -18.53653 -18.19372 -17.55793 -17.44236 -17.16212 -16.76721 -16.54248 -16.19134 -15.96835 -15.39198 -15.02363 -14.95028 -14.77676 -14.57217 -14.52830 -14.47850 -14.31443 -14.18045 -14.04124 -13.89105 -13.65901 -13.34161 -13.04099 -12.96618 -12.74011 -12.65779 -12.48218 -12.28276 -12.18191 -11.57810 -11.05176 -10.74363 -10.69917 -10.47774 -10.45685 -10.09688 -10.08553 -8.21570 -6.53079 0.14130 0.20122 1.47460 1.47847 1.59389 1.60562 1.91395 2.36874 2.50607 2.72800 2.93767 3.11197 3.56387 3.59826 3.75511 3.78047 3.80721 3.87531 3.96153 4.09947 4.13097 4.19864 4.20891 4.41399 4.45010 4.69681 4.71433 4.79823 4.88832 4.91195 4.99314 5.21518 5.35791 5.37861 5.52504 5.64092 5.75716 6.04759 6.52055 6.71433 6.99715 7.16497 7.34335 8.71189 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.021385 B = 0.002768 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.000509 B =10111.679382 C =10327.769370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.082 3.918 3 H 0.126 0.874 4 O -0.382 6.382 5 C 0.094 3.906 6 C -0.060 4.060 7 C -0.162 4.162 8 C 0.083 3.917 9 N -0.510 5.510 10 C 0.084 3.916 11 C -0.154 4.154 12 C 0.497 3.503 13 O -0.571 6.571 14 N -0.699 5.699 15 C 0.253 3.747 16 H 0.044 0.956 17 C -0.560 4.560 18 H 0.097 0.903 19 C 0.013 3.987 20 N -0.876 5.876 21 Si 0.984 3.016 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.253 1.253 25 C 0.413 3.587 26 F -0.201 7.201 27 F -0.221 7.221 28 F -0.152 7.152 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.175 0.825 36 H 0.181 0.819 37 H 0.159 0.841 38 H 0.416 0.584 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 9.260 -16.480 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.021 3.979 3 H 0.144 0.856 4 O -0.301 6.301 5 C 0.018 3.982 6 C -0.068 4.068 7 C -0.181 4.181 8 C -0.073 4.073 9 N -0.220 5.220 10 C -0.073 4.073 11 C -0.173 4.173 12 C 0.284 3.716 13 O -0.449 6.449 14 N -0.352 5.352 15 C 0.146 3.854 16 H 0.061 0.939 17 C -0.597 4.597 18 H 0.115 0.885 19 C -0.192 4.192 20 N -0.510 5.510 21 Si 0.808 3.192 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.177 1.177 25 C 0.356 3.644 26 F -0.183 7.183 27 F -0.203 7.203 28 F -0.133 7.133 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.164 0.836 35 H 0.192 0.808 36 H 0.198 0.802 37 H 0.177 0.823 38 H 0.254 0.746 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.929 7.669 -17.139 19.183 hybrid contribution -0.403 0.571 1.824 1.954 sum -4.332 8.241 -15.314 17.922 Atomic orbital electron populations 1.22242 0.91429 1.03182 1.05393 1.21962 0.96381 0.96760 0.82751 0.85624 1.88103 1.87012 1.35446 1.19539 1.21658 1.02064 0.91324 0.83158 1.20284 0.94012 0.97226 0.95302 1.22351 0.96477 1.00049 0.99251 1.23127 1.00641 0.93017 0.90528 1.67689 1.04369 1.20442 1.29493 1.23237 0.91907 0.95379 0.96759 1.22375 1.02127 0.97565 0.95258 1.21422 0.79202 0.85330 0.85685 1.90701 1.41603 1.25432 1.87126 1.45833 1.57336 1.27752 1.04312 1.19306 0.90334 0.90513 0.85296 0.93859 1.21247 1.48437 0.95169 0.94825 0.88476 1.26039 0.94002 0.97440 1.01726 1.70544 1.39810 1.15731 1.24950 0.85142 0.77783 0.78790 0.77511 1.19972 1.21093 1.17707 1.23345 0.82149 0.83711 0.75173 1.92986 1.47361 1.83876 1.94041 1.93067 1.96284 1.70608 1.60355 1.93377 1.87163 1.82722 1.50021 0.89404 0.87769 0.93467 0.88695 0.90279 0.83642 0.80785 0.80235 0.82328 0.74618 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 9.48 71.98 0.68 -2.57 16 2 C 0.08 2.08 3.13 29.85 0.09 2.17 16 3 H 0.13 2.16 7.79 -2.39 -0.02 2.14 16 4 O -0.38 -10.75 9.51 -129.99 -1.24 -11.98 16 5 C 0.09 1.69 5.92 71.24 0.42 2.11 16 6 C -0.06 -1.23 5.55 -19.67 -0.11 -1.34 16 7 C -0.16 -3.36 9.82 22.36 0.22 -3.15 16 8 C 0.08 1.74 11.18 84.68 0.95 2.68 16 9 N -0.51 -11.78 10.36 -195.84 -2.03 -13.81 16 10 C 0.08 1.59 11.18 84.68 0.95 2.54 16 11 C -0.15 -2.78 9.82 22.36 0.22 -2.56 16 12 C 0.50 19.10 6.71 87.66 0.59 19.69 16 13 O -0.57 -28.48 15.08 15.97 0.24 -28.23 16 14 N -0.70 -26.86 4.95 -446.10 -2.21 -29.06 16 15 C 0.25 12.47 2.21 44.25 0.10 12.57 16 16 H 0.04 2.51 7.58 -2.39 -0.02 2.49 16 17 C -0.56 -27.44 8.47 25.60 0.22 -27.22 16 18 H 0.10 4.27 7.74 -2.91 -0.02 4.25 16 19 C 0.01 0.67 5.20 84.66 0.44 1.11 16 20 N -0.88 -48.38 9.50 21.45 0.20 -48.18 16 21 Si 0.98 39.55 29.54 68.60 2.03 41.57 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.29 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 25 C 0.41 21.31 2.81 71.98 0.20 21.52 16 26 F -0.20 -9.62 16.94 44.97 0.76 -8.86 16 27 F -0.22 -11.60 15.68 44.97 0.70 -10.90 16 28 F -0.15 -8.59 12.91 44.97 0.58 -8.01 16 29 H 0.09 1.52 7.92 -2.39 -0.02 1.50 16 30 H 0.10 1.28 7.87 -2.39 -0.02 1.26 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 1.10 7.83 -2.38 -0.02 1.08 16 33 H 0.08 1.17 8.04 -2.39 -0.02 1.15 16 34 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 35 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.42 12.61 8.32 -92.71 -0.77 11.84 16 39 H 0.27 14.06 8.31 -92.70 -0.77 13.29 16 Total: -1.00 -74.21 349.03 4.34 -69.86 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.33 Total: 20.04 kcal Atomic # 6 Polarization: 22.58 SS G_CDS: 4.97 Total: 27.55 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -4.03 Total: -91.05 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -1.00 Total: -40.22 kcal Atomic # 9 Polarization: -29.81 SS G_CDS: 2.05 Total: -27.76 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.57 kcal Total: -74.21 4.34 -69.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.296 kcal (2) G-P(sol) polarization free energy of solvation -74.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds