Wall clock time and date at job start Tue Mar 31 2020 17:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47360 * 2 1 4 4 N 1.46506 * 109.46831 * 120.00078 * 2 1 3 5 5 C 1.34779 * 119.99461 * 274.99712 * 4 2 1 6 6 O 1.21500 * 120.00178 * 0.02562 * 5 4 2 7 7 C 1.48206 * 119.99559 * 179.97438 * 5 4 2 8 8 N 1.32981 * 120.61862 * 359.72312 * 7 5 4 9 9 C 1.31767 * 120.90797 * 179.79786 * 8 7 5 10 10 N 1.31188 * 122.65102 * 0.47315 * 9 8 7 11 11 C 1.34523 * 121.10416 * 359.77132 * 10 9 8 12 12 C 1.44793 * 130.27237 * 179.97438 * 11 10 9 13 13 C 1.32208 * 114.90720 * 180.02562 * 12 11 10 14 14 S 1.75361 * 111.45468 * 0.02562 * 13 12 11 15 15 C 1.40451 * 120.61648 * 179.97438 * 7 5 4 16 16 C 1.53002 * 109.46982 * 239.99707 * 2 1 3 17 17 C 1.53943 * 113.74049 * 158.74593 * 16 2 1 18 18 N 1.47812 * 86.03624 * 222.08213 * 17 16 2 19 19 C 1.36932 * 134.45834 * 204.63677 * 18 17 16 20 20 H 1.07995 * 120.00395 * 179.86632 * 19 18 17 21 21 C 1.38817 * 120.00007 * 359.87680 * 19 18 17 22 22 N 1.31616 * 120.00028 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99813 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47531 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47185 * 119.99911 * 23 21 19 26 26 H 1.48507 * 109.46809 * 239.99104 * 23 21 19 27 27 C 1.47583 * 91.04785 * 24.54989 * 18 17 16 28 28 H 1.09001 * 109.46812 * 300.00367 * 1 2 3 29 29 H 1.09002 * 109.46935 * 60.00025 * 1 2 3 30 30 H 1.08992 * 109.47061 * 180.02562 * 1 2 3 31 31 H 0.96995 * 119.99814 * 94.99660 * 4 2 1 32 32 H 1.08004 * 118.67549 * 180.25043 * 9 8 7 33 33 H 1.07994 * 122.54721 * 0.05610 * 12 11 10 34 34 H 1.08004 * 124.27290 * 180.02562 * 13 12 11 35 35 H 1.09002 * 112.94415 * 290.33524 * 16 2 1 36 36 H 1.09003 * 113.76909 * 336.34642 * 17 16 2 37 37 H 1.09000 * 113.77268 * 107.74525 * 17 16 2 38 38 H 0.96995 * 120.00501 * 180.02562 * 22 21 19 39 39 H 1.09002 * 113.76477 * 221.14838 * 27 18 17 40 40 H 1.09002 * 113.87465 * 89.77029 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8577 1.1606 2.4118 7 6 2.6404 -0.7170 3.5674 8 7 2.9545 -2.0084 3.5231 9 6 3.3974 -2.6344 4.5947 10 7 3.5450 -2.0368 5.7531 11 6 3.2508 -0.7329 5.9050 12 6 3.3365 0.1159 7.0749 13 6 2.9650 1.3699 6.8814 14 16 2.4645 1.6420 5.2229 15 6 2.7801 -0.0288 4.7838 16 6 2.0400 -0.7213 -1.2492 17 6 3.4848 -0.3523 -1.6316 18 7 2.9979 -0.3179 -3.0268 19 6 3.5876 -0.4759 -4.2525 20 1 2.9929 -0.4040 -5.1512 21 6 4.9497 -0.7287 -4.3401 22 7 5.6745 -0.8160 -3.2450 23 14 5.7539 -0.9449 -6.0122 24 1 4.7286 -0.8020 -7.0768 25 1 6.8042 0.0891 -6.1938 26 1 6.3684 -2.2943 -6.0951 27 6 1.6214 -0.0473 -2.5684 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.2489 -1.6318 1.1526 32 1 3.6456 -3.6827 4.5170 33 1 3.6785 -0.2476 8.0326 34 1 2.9693 2.1306 7.6480 35 1 1.8528 -1.7949 -1.2262 36 1 3.8048 0.6189 -1.2539 37 1 4.2071 -1.1449 -1.4366 38 1 6.6264 -0.9923 -3.3061 39 1 0.8587 -0.5970 -3.1199 40 1 1.3909 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969812643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:44 Heat of formation + Delta-G solvation = 95.494227 kcal Electronic energy + Delta-G solvation = -25203.885016 eV Core-core repulsion = 21533.522139 eV Total energy + Delta-G solvation = -3670.362877 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.45165 -39.71023 -38.08867 -36.50764 -34.94836 -33.69835 -32.17447 -30.99583 -30.40754 -27.53151 -25.92741 -25.30002 -24.70493 -23.91681 -22.42029 -21.39339 -20.47363 -19.38829 -18.69686 -18.05769 -17.15405 -16.73385 -16.13332 -15.80917 -15.74930 -14.96029 -14.89238 -14.65064 -14.52647 -14.16613 -13.83831 -13.52425 -13.17648 -13.10782 -12.64164 -12.47026 -12.18852 -11.72230 -11.67035 -11.38235 -11.30307 -11.15013 -10.97786 -10.91366 -10.74010 -10.42155 -10.38101 -9.91575 -9.77879 -9.71181 -9.62790 -9.41266 -8.94902 -8.79575 -8.32208 -6.86912 -5.75731 -3.08098 -0.11904 0.25227 1.03410 1.60103 1.63421 2.68140 2.87140 3.39352 3.43830 3.44540 3.47253 3.51318 3.68100 4.14307 4.31845 4.45494 4.66441 4.85070 5.06517 5.15298 5.24187 5.26438 5.42750 5.52287 5.54217 5.62340 5.75215 5.87547 5.92607 5.98929 6.18680 6.31810 6.35093 6.37428 6.53041 6.62414 6.74674 7.24103 7.36151 7.43854 7.57200 7.65467 7.98896 8.06648 9.05450 9.71869 10.60740 11.41314 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.002684 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.458403 B =10429.265105 C =10952.578099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.148 3.852 3 H 0.091 0.909 4 N -0.685 5.685 5 C 0.563 3.437 6 O -0.522 6.522 7 C 0.195 3.805 8 N -0.482 5.482 9 C 0.298 3.702 10 N -0.479 5.479 11 C 0.167 3.833 12 C -0.123 4.123 13 C -0.183 4.183 14 S 0.217 5.783 15 C -0.231 4.231 16 C -0.147 4.147 17 C 0.170 3.830 18 N -0.612 5.612 19 C -0.222 4.222 20 H 0.080 0.920 21 C -0.009 4.009 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.131 3.869 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.412 0.588 32 H 0.209 0.791 33 H 0.158 0.842 34 H 0.181 0.819 35 H 0.090 0.910 36 H 0.026 0.974 37 H 0.072 0.928 38 H 0.253 0.747 39 H 0.045 0.955 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.534 0.654 21.869 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.043 3.957 3 H 0.109 0.891 4 N -0.335 5.335 5 C 0.346 3.654 6 O -0.397 6.397 7 C 0.034 3.966 8 N -0.199 5.199 9 C 0.006 3.994 10 N -0.193 5.193 11 C 0.021 3.979 12 C -0.154 4.154 13 C -0.321 4.321 14 S 0.480 5.520 15 C -0.352 4.352 16 C -0.167 4.167 17 C 0.045 3.955 18 N -0.339 5.339 19 C -0.350 4.350 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.005 3.995 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.249 0.751 32 H 0.225 0.775 33 H 0.176 0.824 34 H 0.198 0.802 35 H 0.108 0.892 36 H 0.044 0.956 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.766 1.743 20.851 22.685 hybrid contribution 1.132 -1.031 -0.019 1.531 sum -7.633 0.712 20.832 22.198 Atomic orbital electron populations 1.22136 0.95231 1.02028 1.02287 1.21268 0.93781 0.97690 0.82917 0.89059 1.45951 1.63986 1.14878 1.08670 1.17664 0.78915 0.86190 0.82649 1.90781 1.50335 1.14528 1.84076 1.21209 0.93520 0.89768 0.92059 1.68488 1.11513 1.07606 1.32309 1.24845 0.91639 1.00778 0.82164 1.68232 1.15476 1.08549 1.27051 1.20428 0.95056 0.90411 0.92027 1.20493 1.05013 0.91847 0.98017 1.25929 1.02761 1.00367 1.03039 1.85057 1.65259 1.02221 0.99414 1.24349 1.09184 1.02554 0.99131 1.23848 1.01017 0.99836 0.92012 1.22305 0.91361 0.98535 0.83323 1.45991 1.03273 1.82572 1.02014 1.19066 0.91435 1.41535 0.82956 0.90201 1.24789 0.96071 1.02402 0.97263 1.69824 1.06026 1.55211 1.25703 0.86057 0.79305 0.77380 0.83085 1.20465 1.21775 1.21714 1.22482 0.89709 0.96612 0.90730 0.92712 0.91071 0.92515 0.75126 0.77455 0.82437 0.80153 0.89158 0.95635 0.90945 0.93724 0.93680 0.94724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.31 37.16 0.35 -1.69 16 2 C 0.15 2.24 2.38 -67.92 -0.16 2.08 16 3 H 0.09 1.56 7.42 -51.93 -0.39 1.18 16 4 N -0.69 -9.82 5.07 -54.63 -0.28 -10.09 16 5 C 0.56 8.50 7.79 -12.16 -0.09 8.41 16 6 O -0.52 -8.75 14.87 5.37 0.08 -8.67 16 7 C 0.19 2.69 6.81 -82.44 -0.56 2.13 16 8 N -0.48 -6.08 9.69 -11.12 -0.11 -6.19 16 9 C 0.30 3.23 12.22 -92.70 -1.13 2.09 16 10 N -0.48 -5.66 10.49 -11.76 -0.12 -5.79 16 11 C 0.17 1.97 7.23 -83.24 -0.60 1.37 16 12 C -0.12 -1.06 10.39 -38.92 -0.40 -1.46 16 13 C -0.18 -1.35 11.03 28.81 0.32 -1.03 16 14 S 0.22 2.31 21.59 -107.50 -2.32 -0.01 16 15 C -0.23 -2.96 6.35 -37.89 -0.24 -3.20 16 16 C -0.15 -2.61 3.47 -89.70 -0.31 -2.92 16 17 C 0.17 3.97 7.08 -2.84 -0.02 3.95 16 18 N -0.61 -15.67 3.70 -177.71 -0.66 -16.33 16 19 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 20 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.92 -27.49 11.39 55.49 0.63 -26.86 16 23 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 C 0.13 2.60 7.64 -2.97 -0.02 2.57 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.87 7.52 -51.93 -0.39 0.48 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.41 5.48 7.99 -40.82 -0.33 5.15 16 32 H 0.21 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.18 0.68 8.06 -52.48 -0.42 0.25 16 35 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 36 H 0.03 0.63 7.99 -51.93 -0.41 0.22 16 37 H 0.07 1.87 7.17 -51.93 -0.37 1.50 16 38 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -33.67 354.62 -10.41 -44.08 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.81 Total: 1.74 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -3.14 Total: 5.51 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: -0.53 Total: -65.26 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.32 Total: -0.01 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.67 -10.41 -44.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969812643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.576 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds