Wall clock time and date at job start Tue Mar 31 2020 17:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47360 * 2 1 4 4 N 1.46506 * 109.46831 * 120.00078 * 2 1 3 5 5 C 1.34779 * 119.99461 * 274.99712 * 4 2 1 6 6 O 1.21500 * 120.00178 * 0.02562 * 5 4 2 7 7 C 1.48206 * 119.99559 * 179.97438 * 5 4 2 8 8 N 1.32981 * 120.61862 * 359.72312 * 7 5 4 9 9 C 1.31767 * 120.90797 * 179.79786 * 8 7 5 10 10 N 1.31188 * 122.65102 * 0.47315 * 9 8 7 11 11 C 1.34523 * 121.10416 * 359.77132 * 10 9 8 12 12 C 1.44793 * 130.27237 * 179.97438 * 11 10 9 13 13 C 1.32208 * 114.90720 * 180.02562 * 12 11 10 14 14 S 1.75361 * 111.45468 * 0.02562 * 13 12 11 15 15 C 1.40451 * 120.61648 * 179.97438 * 7 5 4 16 16 C 1.53002 * 109.46982 * 239.99707 * 2 1 3 17 17 C 1.53943 * 113.74049 * 158.74593 * 16 2 1 18 18 N 1.47812 * 86.03624 * 222.08213 * 17 16 2 19 19 C 1.36932 * 134.45834 * 204.63677 * 18 17 16 20 20 H 1.07995 * 120.00395 * 179.86632 * 19 18 17 21 21 C 1.38817 * 120.00007 * 359.87680 * 19 18 17 22 22 N 1.31616 * 120.00028 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99813 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47531 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47185 * 119.99911 * 23 21 19 26 26 H 1.48507 * 109.46809 * 239.99104 * 23 21 19 27 27 C 1.47583 * 91.04785 * 24.54989 * 18 17 16 28 28 H 1.09001 * 109.46812 * 300.00367 * 1 2 3 29 29 H 1.09002 * 109.46935 * 60.00025 * 1 2 3 30 30 H 1.08992 * 109.47061 * 180.02562 * 1 2 3 31 31 H 0.96995 * 119.99814 * 94.99660 * 4 2 1 32 32 H 1.08004 * 118.67549 * 180.25043 * 9 8 7 33 33 H 1.07994 * 122.54721 * 0.05610 * 12 11 10 34 34 H 1.08004 * 124.27290 * 180.02562 * 13 12 11 35 35 H 1.09002 * 112.94415 * 290.33524 * 16 2 1 36 36 H 1.09003 * 113.76909 * 336.34642 * 17 16 2 37 37 H 1.09000 * 113.77268 * 107.74525 * 17 16 2 38 38 H 0.96995 * 120.00501 * 180.02562 * 22 21 19 39 39 H 1.09002 * 113.76477 * 221.14838 * 27 18 17 40 40 H 1.09002 * 113.87465 * 89.77029 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8577 1.1606 2.4118 7 6 2.6404 -0.7170 3.5674 8 7 2.9545 -2.0084 3.5231 9 6 3.3974 -2.6344 4.5947 10 7 3.5450 -2.0368 5.7531 11 6 3.2508 -0.7329 5.9050 12 6 3.3365 0.1159 7.0749 13 6 2.9650 1.3699 6.8814 14 16 2.4645 1.6420 5.2229 15 6 2.7801 -0.0288 4.7838 16 6 2.0400 -0.7213 -1.2492 17 6 3.4848 -0.3523 -1.6316 18 7 2.9979 -0.3179 -3.0268 19 6 3.5876 -0.4759 -4.2525 20 1 2.9929 -0.4040 -5.1512 21 6 4.9497 -0.7287 -4.3401 22 7 5.6745 -0.8160 -3.2450 23 14 5.7539 -0.9449 -6.0122 24 1 4.7286 -0.8020 -7.0768 25 1 6.8042 0.0891 -6.1938 26 1 6.3684 -2.2943 -6.0951 27 6 1.6214 -0.0473 -2.5684 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.2489 -1.6318 1.1526 32 1 3.6456 -3.6827 4.5170 33 1 3.6785 -0.2476 8.0326 34 1 2.9693 2.1306 7.6480 35 1 1.8528 -1.7949 -1.2262 36 1 3.8048 0.6189 -1.2539 37 1 4.2071 -1.1449 -1.4366 38 1 6.6264 -0.9923 -3.3061 39 1 0.8587 -0.5970 -3.1199 40 1 1.3909 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969812643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:44 Heat of formation + Delta-G solvation = 73.238079 kcal Electronic energy + Delta-G solvation = -25204.850115 eV Core-core repulsion = 21533.522139 eV Total energy + Delta-G solvation = -3671.327976 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.36493 -40.94124 -39.66520 -37.28050 -36.33007 -34.66089 -34.11985 -31.91115 -31.65359 -29.37135 -27.06777 -26.32299 -26.10154 -25.55669 -23.50694 -22.60446 -21.62850 -20.86796 -19.57461 -19.20042 -18.75042 -18.01304 -17.36519 -16.94435 -16.80728 -16.70468 -15.88791 -15.71630 -15.64498 -15.51259 -15.07708 -14.84185 -14.67874 -14.13979 -13.87891 -13.48874 -13.40768 -13.28027 -13.09832 -12.93357 -12.74486 -12.57485 -12.45281 -12.10519 -11.99668 -11.85051 -11.75561 -11.55460 -11.44387 -11.23139 -10.88703 -10.58813 -10.48612 -10.19617 -9.14876 -8.92441 -7.90782 -5.24423 -1.01929 -0.62377 0.22775 0.86849 0.89503 1.44784 1.45903 1.56255 1.62070 1.77214 2.46819 2.58529 2.63352 2.80914 3.19177 3.30584 3.37721 3.42359 3.72203 3.88565 3.96080 4.08997 4.27531 4.44114 4.54708 4.57619 4.73822 4.76960 4.80255 4.84906 4.92095 4.99593 5.05102 5.08895 5.24999 5.32350 5.34548 5.49671 5.54290 5.64235 5.93008 6.30244 6.73796 6.91160 6.91763 7.60733 8.56219 9.26201 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.002684 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.458403 B =10429.265105 C =10952.578099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.070 0.930 4 N -0.683 5.683 5 C 0.562 3.438 6 O -0.543 6.543 7 C 0.174 3.826 8 N -0.492 5.492 9 C 0.293 3.707 10 N -0.486 5.486 11 C 0.158 3.842 12 C -0.133 4.133 13 C -0.151 4.151 14 S 0.185 5.815 15 C -0.251 4.251 16 C -0.111 4.111 17 C 0.166 3.834 18 N -0.645 5.645 19 C -0.232 4.232 20 H 0.086 0.914 21 C -0.071 4.071 22 N -0.955 5.955 23 Si 0.979 3.021 24 H -0.263 1.263 25 H -0.295 1.295 26 H -0.291 1.291 27 C 0.133 3.867 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.418 0.582 32 H 0.243 0.757 33 H 0.186 0.814 34 H 0.224 0.776 35 H 0.104 0.896 36 H 0.005 0.995 37 H 0.039 0.961 38 H 0.247 0.753 39 H 0.067 0.933 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.752 0.368 23.078 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.052 3.948 3 H 0.088 0.912 4 N -0.333 5.333 5 C 0.345 3.655 6 O -0.420 6.420 7 C 0.015 3.985 8 N -0.209 5.209 9 C 0.002 3.998 10 N -0.201 5.201 11 C 0.011 3.989 12 C -0.162 4.162 13 C -0.288 4.288 14 S 0.448 5.552 15 C -0.373 4.373 16 C -0.130 4.130 17 C 0.041 3.959 18 N -0.371 5.371 19 C -0.361 4.361 20 H 0.104 0.896 21 C -0.264 4.264 22 N -0.604 5.604 23 Si 0.807 3.193 24 H -0.187 1.187 25 H -0.223 1.223 26 H -0.218 1.218 27 C 0.008 3.992 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.255 0.745 32 H 0.259 0.741 33 H 0.204 0.796 34 H 0.241 0.759 35 H 0.122 0.878 36 H 0.022 0.978 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.029 1.448 22.061 24.277 hybrid contribution 1.502 -0.899 -0.299 1.776 sum -8.527 0.549 21.762 23.379 Atomic orbital electron populations 1.22058 0.92642 1.03270 1.02770 1.21047 0.95548 0.96077 0.82080 0.91154 1.45877 1.64016 1.15046 1.08350 1.17881 0.78478 0.86006 0.83119 1.90758 1.51267 1.15419 1.84595 1.21036 0.94965 0.90538 0.91962 1.68482 1.12012 1.07241 1.33190 1.25566 0.90682 1.02000 0.81527 1.68315 1.15690 1.08718 1.27346 1.21052 0.94371 0.90644 0.92831 1.20806 1.05573 0.91743 0.98082 1.26317 1.00225 1.00811 1.01471 1.85131 1.65973 1.01613 1.02460 1.24552 1.09908 1.03611 0.99207 1.23459 0.96318 1.00600 0.92670 1.22181 0.93997 0.96441 0.83302 1.46424 1.05943 1.82845 1.01886 1.19496 0.91904 1.40241 0.84420 0.89589 1.25659 0.96850 1.03062 1.00794 1.70026 1.05762 1.56853 1.27775 0.85000 0.78224 0.76734 0.79322 1.18707 1.22253 1.21799 1.22678 0.87593 0.97708 0.91234 0.92794 0.90026 0.90869 0.74513 0.74108 0.79646 0.75939 0.87834 0.97764 0.94244 0.94428 0.91512 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.31 71.98 0.67 -2.88 16 2 C 0.16 4.70 2.38 44.99 0.11 4.81 16 3 H 0.07 2.44 7.42 -2.39 -0.02 2.43 16 4 N -0.68 -19.69 5.07 -445.05 -2.26 -21.95 16 5 C 0.56 17.34 7.79 86.89 0.68 18.02 16 6 O -0.54 -18.72 14.87 -3.72 -0.06 -18.77 16 7 C 0.17 4.91 6.81 42.16 0.29 5.19 16 8 N -0.49 -12.39 9.69 -189.08 -1.83 -14.22 16 9 C 0.29 6.13 12.22 181.07 2.21 8.34 16 10 N -0.49 -10.98 10.49 -191.11 -2.00 -12.99 16 11 C 0.16 3.57 7.23 40.96 0.30 3.86 16 12 C -0.13 -1.96 10.39 22.92 0.24 -1.72 16 13 C -0.15 -1.81 11.03 66.79 0.74 -1.07 16 14 S 0.19 3.85 21.59 -56.49 -1.22 2.63 16 15 C -0.25 -6.45 6.35 23.36 0.15 -6.30 16 16 C -0.11 -3.87 3.47 -10.14 -0.04 -3.91 16 17 C 0.17 8.03 7.08 86.44 0.61 8.64 16 18 N -0.64 -33.25 3.70 -716.16 -2.65 -35.90 16 19 C -0.23 -13.16 10.70 84.04 0.90 -12.26 16 20 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 21 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 22 N -0.95 -58.91 11.39 21.65 0.25 -58.67 16 23 Si 0.98 46.38 29.55 68.60 2.03 48.41 16 24 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 26 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 27 C 0.13 5.09 7.64 86.48 0.66 5.75 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.78 7.52 -2.39 -0.02 1.77 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.42 11.10 7.99 -92.71 -0.74 10.36 16 32 H 0.24 2.96 8.06 -2.91 -0.02 2.93 16 33 H 0.19 1.67 8.06 -2.91 -0.02 1.64 16 34 H 0.22 0.68 8.06 -2.91 -0.02 0.65 16 35 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 36 H 0.00 0.24 7.99 -2.39 -0.02 0.22 16 37 H 0.04 2.14 7.17 -2.39 -0.02 2.12 16 38 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 Total: -1.00 -75.55 354.62 0.58 -74.97 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.35 Total: 13.67 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 7.98 Total: 22.82 kcal Atomic # 7 Polarization: -135.23 SS G_CDS: -8.50 Total: -143.73 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.06 Total: -18.77 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.22 Total: 2.63 kcal Total: -75.55 0.58 -74.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969812643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.209 kcal (2) G-P(sol) polarization free energy of solvation -75.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds