Wall clock time and date at job start Tue Mar 31 2020 17:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.99796 * 2 1 4 4 C 1.54338 * 109.99050 * 238.96333 * 2 1 3 5 5 C 1.55159 * 103.02114 * 218.66520 * 4 2 1 6 6 H 1.09001 * 111.00940 * 277.23498 * 5 4 2 7 7 N 1.46503 * 111.00596 * 153.37834 * 5 4 2 8 8 C 1.36935 * 120.00174 * 161.34876 * 7 5 4 9 9 H 1.08009 * 119.99725 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00305 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00285 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99750 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47156 * 89.99876 * 12 10 8 14 14 H 1.48501 * 109.46964 * 209.99878 * 12 10 8 15 15 H 1.48496 * 109.47178 * 330.00018 * 12 10 8 16 16 C 1.54913 * 101.57923 * 35.30669 * 5 4 2 17 17 N 1.47020 * 109.88341 * 121.09680 * 2 1 3 18 18 C 1.34777 * 125.64920 * 298.39630 * 17 2 1 19 19 O 1.21509 * 119.99709 * 359.71604 * 18 17 2 20 20 C 1.48211 * 120.00062 * 179.71306 * 18 17 2 21 21 N 1.32983 * 120.61566 * 0.75325 * 20 18 17 22 22 C 1.31767 * 120.90868 * 179.97438 * 21 20 18 23 23 N 1.31191 * 122.64717 * 359.54257 * 22 21 20 24 24 C 1.34516 * 121.10702 * 359.97432 * 23 22 21 25 25 C 1.44790 * 130.27464 * 179.97438 * 24 23 22 26 26 C 1.32209 * 114.91313 * 179.72980 * 25 24 23 27 27 S 1.75364 * 111.45034 * 0.27591 * 26 25 24 28 28 C 1.40450 * 120.61306 * 179.97438 * 20 18 17 29 29 H 1.09000 * 109.46980 * 300.35636 * 1 2 3 30 30 H 1.09007 * 109.47114 * 60.35464 * 1 2 3 31 31 H 1.08999 * 109.47302 * 180.35643 * 1 2 3 32 32 H 1.09000 * 110.84975 * 100.20085 * 4 2 1 33 33 H 1.08997 * 110.66842 * 337.04542 * 4 2 1 34 34 H 0.97002 * 119.99626 * 341.35614 * 7 5 4 35 35 H 0.97001 * 119.99914 * 179.97438 * 11 10 8 36 36 H 1.09000 * 110.36415 * 204.14868 * 16 5 4 37 37 H 1.09004 * 110.46035 * 81.87687 * 16 5 4 38 38 H 1.07998 * 118.67657 * 179.52344 * 22 21 20 39 39 H 1.08002 * 122.54563 * 0.02562 * 25 24 23 40 40 H 1.07998 * 124.27317 * 180.27570 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2428 5 6 3.2863 -1.5184 -0.6915 6 1 4.1670 -0.8769 -0.6579 7 7 3.5475 -2.7243 -1.4814 8 6 4.7733 -3.3314 -1.4192 9 1 5.5476 -2.9213 -0.7875 10 6 5.0210 -4.4737 -2.1679 11 7 6.1991 -5.0574 -2.1078 12 14 3.6822 -5.1824 -3.2609 13 1 3.7750 -4.5764 -4.6135 14 1 3.8551 -6.6536 -3.3647 15 1 2.3522 -4.8805 -2.6735 16 6 2.8098 -1.8825 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.8073 -0.3621 2.4657 19 8 1.1462 0.6256 2.7184 20 6 2.3689 -1.1798 3.5669 21 7 3.1066 -2.2546 3.3042 22 6 3.6091 -2.9854 4.2788 23 7 3.4242 -2.6991 5.5457 24 6 2.7012 -1.6275 5.9177 25 6 2.3742 -1.1316 7.2381 26 6 1.6377 -0.0337 7.2541 27 16 1.2582 0.5076 5.6299 28 6 2.1453 -0.8245 4.9073 29 1 -0.3633 0.5194 0.8868 30 1 -0.3634 0.5083 -0.8932 31 1 -0.3634 -1.0276 0.0064 32 1 2.3597 -0.0450 -2.0192 33 1 1.3066 -1.4405 -1.6225 34 1 2.8520 -3.0927 -2.0484 35 1 6.3720 -5.8559 -2.6307 36 1 3.6655 -2.0413 1.3931 37 1 2.1805 -2.7722 0.7133 38 1 4.1965 -3.8552 4.0244 39 1 2.7105 -1.6188 8.1415 40 1 1.3112 0.4665 8.1538 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988933892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:58 Heat of formation + Delta-G solvation = 72.493737 kcal Electronic energy + Delta-G solvation = -25926.286260 eV Core-core repulsion = 22254.926008 eV Total energy + Delta-G solvation = -3671.360253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.39155 -39.86675 -37.62332 -36.43420 -34.38953 -33.68802 -31.65043 -31.40943 -30.86383 -28.96032 -25.91575 -25.41161 -25.15302 -23.62618 -22.42317 -21.45646 -20.44055 -19.46275 -18.59557 -17.76752 -17.53308 -16.89314 -16.48138 -15.83292 -15.46511 -15.06993 -14.80761 -14.47906 -14.40387 -14.13207 -13.70078 -13.49532 -13.11350 -13.07285 -12.65193 -12.53137 -12.47419 -12.34806 -11.95380 -11.65989 -11.42564 -11.18153 -11.07477 -10.95447 -10.75005 -10.68290 -10.42010 -10.22828 -10.08262 -9.65377 -9.62607 -9.42384 -8.98210 -8.55302 -8.22721 -7.38111 -5.83609 -3.21313 -0.00906 0.34724 1.09535 1.65281 1.71806 2.73060 2.78118 3.33000 3.35577 3.41714 3.54715 3.61659 3.79717 4.09796 4.41465 4.52786 4.70019 4.76523 4.94096 5.03969 5.08495 5.21426 5.32637 5.48244 5.50350 5.54197 5.61241 5.63973 5.71914 5.89389 5.98159 6.01608 6.15096 6.20041 6.34143 6.39972 6.55339 6.68708 6.75860 7.52505 7.73584 7.90595 8.02565 8.34852 9.11515 9.83615 10.01673 11.34086 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.003613 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.213473 B = 7747.012536 C = 9195.590812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 H 0.079 0.921 4 C -0.141 4.141 5 C 0.174 3.826 6 H 0.072 0.928 7 N -0.735 5.735 8 C -0.249 4.249 9 H 0.093 0.907 10 C 0.010 3.990 11 N -0.929 5.929 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C 0.074 3.926 17 N -0.579 5.579 18 C 0.575 3.425 19 O -0.531 6.531 20 C 0.194 3.806 21 N -0.467 5.467 22 C 0.299 3.701 23 N -0.479 5.479 24 C 0.166 3.834 25 C -0.121 4.121 26 C -0.184 4.184 27 S 0.206 5.794 28 C -0.229 4.229 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.364 0.636 35 H 0.260 0.740 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.212 0.788 39 H 0.158 0.842 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.450 10.987 15.634 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.097 0.903 4 C -0.179 4.179 5 C 0.063 3.937 6 H 0.090 0.910 7 N -0.377 5.377 8 C -0.379 4.379 9 H 0.110 0.890 10 C -0.187 4.187 11 N -0.576 5.576 12 Si 0.713 3.287 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.050 4.050 17 N -0.311 5.311 18 C 0.360 3.640 19 O -0.409 6.409 20 C 0.034 3.966 21 N -0.183 5.183 22 C 0.008 3.992 23 N -0.193 5.193 24 C 0.019 3.981 25 C -0.151 4.151 26 C -0.322 4.322 27 S 0.468 5.532 28 C -0.351 4.351 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.197 0.803 35 H 0.071 0.929 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.228 0.772 39 H 0.175 0.825 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -11.803 11.838 15.112 22.535 hybrid contribution -0.425 -1.441 0.006 1.503 sum -12.228 10.397 15.118 22.049 Atomic orbital electron populations 1.22138 0.94757 1.02339 1.02718 1.21629 0.94462 0.96348 0.84142 0.90310 1.23064 0.99138 0.99830 0.95897 1.21337 0.94806 0.88721 0.88876 0.90981 1.42635 1.13873 1.29193 1.51973 1.19058 0.89079 1.06601 1.23138 0.88954 1.24662 0.96385 0.97831 0.99794 1.69695 1.21175 1.22119 1.44649 0.86588 0.82082 0.78732 0.81317 1.21017 1.21687 1.20288 1.23822 0.96090 0.86230 0.98901 1.48464 1.50110 1.28721 1.03762 1.17305 0.81116 0.84135 0.81454 1.90745 1.40615 1.26625 1.82900 1.21090 0.92938 0.92266 0.90318 1.68925 1.08084 1.04450 1.36871 1.25072 0.94139 0.97584 0.82385 1.68266 1.14065 1.15772 1.21174 1.20439 0.93750 0.91090 0.92774 1.20505 1.01788 0.97478 0.95362 1.25871 1.02245 1.00194 1.03916 1.84900 1.51603 1.23632 0.93020 1.24292 1.07826 1.04437 0.98534 0.91400 0.91554 0.92496 0.89861 0.90503 0.80267 0.92944 0.87771 0.91211 0.77192 0.82464 0.80269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.11 37.15 0.34 -1.66 16 2 C 0.14 1.88 3.46 -66.95 -0.23 1.65 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.14 -1.99 6.11 -24.89 -0.15 -2.15 16 5 C 0.17 3.11 3.69 -65.78 -0.24 2.87 16 6 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 7 N -0.74 -16.13 5.08 -51.34 -0.26 -16.39 16 8 C -0.25 -6.61 10.47 -15.06 -0.16 -6.77 16 9 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 10 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 11 N -0.93 -28.12 13.97 55.49 0.78 -27.35 16 12 Si 0.88 21.16 27.74 -169.99 -4.71 16.44 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 16 C 0.07 1.27 5.67 -2.53 -0.01 1.26 16 17 N -0.58 -9.04 3.06 -163.98 -0.50 -9.54 16 18 C 0.57 9.24 7.64 -12.16 -0.09 9.15 16 19 O -0.53 -8.87 14.25 5.36 0.08 -8.79 16 20 C 0.19 3.00 6.77 -82.44 -0.56 2.44 16 21 N -0.47 -7.16 6.78 -11.12 -0.08 -7.23 16 22 C 0.30 4.08 12.22 -92.69 -1.13 2.94 16 23 N -0.48 -6.57 10.49 -11.76 -0.12 -6.70 16 24 C 0.17 2.16 7.23 -83.24 -0.60 1.56 16 25 C -0.12 -1.15 10.38 -38.92 -0.40 -1.55 16 26 C -0.18 -1.47 11.03 28.81 0.32 -1.15 16 27 S 0.21 2.27 21.59 -107.50 -2.32 -0.05 16 28 C -0.23 -3.19 6.35 -37.89 -0.24 -3.43 16 29 H 0.07 0.91 6.89 -51.93 -0.36 0.56 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.08 7.70 -51.93 -0.40 0.68 16 34 H 0.36 7.85 5.57 -40.82 -0.23 7.62 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 36 H 0.10 1.88 5.90 -51.93 -0.31 1.58 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.21 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 344.76 15.07 5.20 5.20 Total: -1.00 -31.78 344.76 -9.91 -41.69 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.69 Total: 7.39 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -3.27 Total: 5.34 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: -0.19 Total: -67.21 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.44 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.32 Total: -0.05 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.78 -9.91 -41.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988933892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.180 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds