Wall clock time and date at job start Tue Mar 31 2020 17:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.99796 * 2 1 4 4 C 1.54338 * 109.99050 * 238.96333 * 2 1 3 5 5 C 1.55159 * 103.02114 * 218.66520 * 4 2 1 6 6 H 1.09001 * 111.00940 * 277.23498 * 5 4 2 7 7 N 1.46503 * 111.00596 * 153.37834 * 5 4 2 8 8 C 1.36935 * 120.00174 * 161.34876 * 7 5 4 9 9 H 1.08009 * 119.99725 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00305 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00285 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99750 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47156 * 89.99876 * 12 10 8 14 14 H 1.48501 * 109.46964 * 209.99878 * 12 10 8 15 15 H 1.48496 * 109.47178 * 330.00018 * 12 10 8 16 16 C 1.54913 * 101.57923 * 35.30669 * 5 4 2 17 17 N 1.47020 * 109.88341 * 121.09680 * 2 1 3 18 18 C 1.34777 * 125.64920 * 298.39630 * 17 2 1 19 19 O 1.21509 * 119.99709 * 359.71604 * 18 17 2 20 20 C 1.48211 * 120.00062 * 179.71306 * 18 17 2 21 21 N 1.32983 * 120.61566 * 0.75325 * 20 18 17 22 22 C 1.31767 * 120.90868 * 179.97438 * 21 20 18 23 23 N 1.31191 * 122.64717 * 359.54257 * 22 21 20 24 24 C 1.34516 * 121.10702 * 359.97432 * 23 22 21 25 25 C 1.44790 * 130.27464 * 179.97438 * 24 23 22 26 26 C 1.32209 * 114.91313 * 179.72980 * 25 24 23 27 27 S 1.75364 * 111.45034 * 0.27591 * 26 25 24 28 28 C 1.40450 * 120.61306 * 179.97438 * 20 18 17 29 29 H 1.09000 * 109.46980 * 300.35636 * 1 2 3 30 30 H 1.09007 * 109.47114 * 60.35464 * 1 2 3 31 31 H 1.08999 * 109.47302 * 180.35643 * 1 2 3 32 32 H 1.09000 * 110.84975 * 100.20085 * 4 2 1 33 33 H 1.08997 * 110.66842 * 337.04542 * 4 2 1 34 34 H 0.97002 * 119.99626 * 341.35614 * 7 5 4 35 35 H 0.97001 * 119.99914 * 179.97438 * 11 10 8 36 36 H 1.09000 * 110.36415 * 204.14868 * 16 5 4 37 37 H 1.09004 * 110.46035 * 81.87687 * 16 5 4 38 38 H 1.07998 * 118.67657 * 179.52344 * 22 21 20 39 39 H 1.08002 * 122.54563 * 0.02562 * 25 24 23 40 40 H 1.07998 * 124.27317 * 180.27570 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2428 5 6 3.2863 -1.5184 -0.6915 6 1 4.1670 -0.8769 -0.6579 7 7 3.5475 -2.7243 -1.4814 8 6 4.7733 -3.3314 -1.4192 9 1 5.5476 -2.9213 -0.7875 10 6 5.0210 -4.4737 -2.1679 11 7 6.1991 -5.0574 -2.1078 12 14 3.6822 -5.1824 -3.2609 13 1 3.7750 -4.5764 -4.6135 14 1 3.8551 -6.6536 -3.3647 15 1 2.3522 -4.8805 -2.6735 16 6 2.8098 -1.8825 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.8073 -0.3621 2.4657 19 8 1.1462 0.6256 2.7184 20 6 2.3689 -1.1798 3.5669 21 7 3.1066 -2.2546 3.3042 22 6 3.6091 -2.9854 4.2788 23 7 3.4242 -2.6991 5.5457 24 6 2.7012 -1.6275 5.9177 25 6 2.3742 -1.1316 7.2381 26 6 1.6377 -0.0337 7.2541 27 16 1.2582 0.5076 5.6299 28 6 2.1453 -0.8245 4.9073 29 1 -0.3633 0.5194 0.8868 30 1 -0.3634 0.5083 -0.8932 31 1 -0.3634 -1.0276 0.0064 32 1 2.3597 -0.0450 -2.0192 33 1 1.3066 -1.4405 -1.6225 34 1 2.8520 -3.0927 -2.0484 35 1 6.3720 -5.8559 -2.6307 36 1 3.6655 -2.0413 1.3931 37 1 2.1805 -2.7722 0.7133 38 1 4.1965 -3.8552 4.0244 39 1 2.7105 -1.6188 8.1415 40 1 1.3112 0.4665 8.1538 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988933892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:57 Heat of formation + Delta-G solvation = 52.768856 kcal Electronic energy + Delta-G solvation = -25927.141595 eV Core-core repulsion = 22254.926008 eV Total energy + Delta-G solvation = -3672.215588 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.44972 -41.07035 -38.94454 -37.31925 -36.13041 -34.74664 -33.51773 -32.60907 -31.80605 -30.54775 -27.06533 -26.57729 -26.12896 -25.42581 -23.53104 -22.45880 -21.95848 -20.61474 -19.74647 -19.48287 -18.69741 -17.89967 -17.74341 -17.06956 -16.68025 -16.34308 -16.06024 -15.79186 -15.48287 -15.21529 -15.15736 -14.88683 -14.50102 -14.27142 -13.91075 -13.88106 -13.63270 -13.43863 -13.23027 -12.96566 -12.89045 -12.57779 -12.28587 -12.16489 -12.06827 -11.92872 -11.89177 -11.76190 -11.49855 -11.38887 -11.02167 -10.51282 -10.45279 -9.80976 -9.32137 -9.13477 -7.98501 -5.33893 -1.02412 -0.66253 0.20564 0.83930 0.87122 1.42278 1.45274 1.51878 1.58091 1.61460 2.51903 2.54513 2.59170 2.73278 3.04090 3.31220 3.39819 3.47507 3.73603 3.88009 3.90430 4.04447 4.06649 4.30002 4.42027 4.43729 4.52598 4.70372 4.75192 4.81283 4.88390 4.95756 5.03483 5.06814 5.15829 5.24873 5.32471 5.39290 5.51709 5.80559 6.22508 6.26147 6.64516 6.83376 7.09868 7.82917 8.03010 9.22476 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.003613 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.213473 B = 7747.012536 C = 9195.590812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.134 3.866 3 H 0.087 0.913 4 C -0.126 4.126 5 C 0.165 3.835 6 H 0.061 0.939 7 N -0.735 5.735 8 C -0.229 4.229 9 H 0.059 0.941 10 C -0.059 4.059 11 N -0.982 5.982 12 Si 0.951 3.049 13 H -0.278 1.278 14 H -0.300 1.300 15 H -0.250 1.250 16 C 0.091 3.909 17 N -0.581 5.581 18 C 0.572 3.428 19 O -0.539 6.539 20 C 0.171 3.829 21 N -0.489 5.489 22 C 0.290 3.710 23 N -0.486 5.486 24 C 0.156 3.844 25 C -0.134 4.134 26 C -0.148 4.148 27 S 0.197 5.803 28 C -0.249 4.249 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.370 0.630 35 H 0.257 0.743 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.228 0.772 39 H 0.185 0.815 40 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.953 12.337 16.649 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.032 3.968 3 H 0.105 0.895 4 C -0.164 4.164 5 C 0.055 3.945 6 H 0.079 0.921 7 N -0.378 5.378 8 C -0.360 4.360 9 H 0.077 0.923 10 C -0.250 4.250 11 N -0.632 5.632 12 Si 0.779 3.221 13 H -0.204 1.204 14 H -0.227 1.227 15 H -0.174 1.174 16 C -0.034 4.034 17 N -0.312 5.312 18 C 0.358 3.642 19 O -0.417 6.417 20 C 0.012 3.988 21 N -0.206 5.206 22 C -0.001 4.001 23 N -0.200 5.200 24 C 0.008 3.992 25 C -0.163 4.163 26 C -0.286 4.286 27 S 0.459 5.541 28 C -0.370 4.370 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.204 0.796 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.244 0.756 39 H 0.202 0.798 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -14.358 13.248 16.146 25.345 hybrid contribution 0.369 -1.719 -0.116 1.762 sum -13.989 11.529 16.030 24.198 Atomic orbital electron populations 1.22069 0.93314 1.02237 1.03442 1.21807 0.95565 0.96402 0.83053 0.89520 1.23001 0.97118 0.99818 0.96465 1.21466 0.96310 0.87519 0.89189 0.92059 1.42539 1.12338 1.30176 1.52741 1.18979 0.89932 1.06023 1.21084 0.92324 1.25446 0.98790 0.98692 1.02102 1.69880 1.23806 1.22958 1.46531 0.85468 0.80241 0.77009 0.79383 1.20387 1.22744 1.17414 1.23391 0.95576 0.86484 0.97991 1.48462 1.50078 1.28365 1.04342 1.17456 0.80939 0.84118 0.81663 1.90725 1.40989 1.26939 1.83095 1.21100 0.93910 0.92760 0.91013 1.68859 1.08892 1.05061 1.37780 1.25419 0.94327 0.97973 0.82422 1.68310 1.14423 1.16308 1.20982 1.21122 0.93135 0.90624 0.94272 1.20791 1.02642 0.98262 0.94596 1.26328 0.99894 0.98892 1.03481 1.84907 1.51169 1.22808 0.95198 1.24542 1.08533 1.05733 0.98214 0.92591 0.88891 0.92943 0.87753 0.89584 0.79625 0.93402 0.89265 0.92279 0.75577 0.79783 0.75672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.11 71.98 0.66 -2.78 16 2 C 0.13 3.45 3.46 45.34 0.16 3.61 16 3 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 4 C -0.13 -3.28 6.11 31.79 0.19 -3.09 16 5 C 0.17 5.84 3.69 46.38 0.17 6.01 16 6 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 7 N -0.74 -31.88 5.08 -316.36 -1.61 -33.48 16 8 C -0.23 -12.42 10.47 84.03 0.88 -11.54 16 9 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 10 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 11 N -0.98 -61.34 13.97 21.65 0.30 -61.04 16 12 Si 0.95 43.66 27.74 68.60 1.90 45.56 16 13 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 14 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 15 H -0.25 -10.20 6.52 99.48 0.65 -9.55 16 16 C 0.09 3.15 5.67 86.86 0.49 3.64 16 17 N -0.58 -18.01 3.06 -790.99 -2.42 -20.44 16 18 C 0.57 18.52 7.64 86.89 0.66 19.18 16 19 O -0.54 -17.83 14.25 -3.74 -0.05 -17.88 16 20 C 0.17 5.41 6.77 42.16 0.29 5.70 16 21 N -0.49 -15.61 6.78 -189.08 -1.28 -16.90 16 22 C 0.29 8.17 12.22 181.07 2.21 10.38 16 23 N -0.49 -13.37 10.49 -191.11 -2.00 -15.37 16 24 C 0.16 3.94 7.23 40.96 0.30 4.24 16 25 C -0.13 -2.18 10.38 22.92 0.24 -1.94 16 26 C -0.15 -1.83 11.03 66.79 0.74 -1.09 16 27 S 0.20 4.02 21.59 -56.49 -1.22 2.80 16 28 C -0.25 -6.85 6.35 23.37 0.15 -6.71 16 29 H 0.06 1.41 6.89 -2.39 -0.02 1.40 16 30 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 2.32 8.14 -2.39 -0.02 2.31 16 33 H 0.09 2.14 7.70 -2.39 -0.02 2.12 16 34 H 0.37 15.21 5.57 -92.71 -0.52 14.70 16 35 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.09 3.38 5.90 -2.39 -0.01 3.37 16 37 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.23 5.19 8.06 -2.91 -0.02 5.17 16 39 H 0.19 2.00 8.06 -2.91 -0.02 1.97 16 40 H 0.23 0.65 8.06 -2.91 -0.02 0.62 16 Total: -1.00 -71.42 344.76 1.73 -69.69 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.52 Total: 24.31 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 7.60 Total: 22.75 kcal Atomic # 7 Polarization: -140.21 SS G_CDS: -7.02 Total: -147.22 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.05 Total: -17.88 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.90 Total: 45.56 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.22 Total: 2.80 kcal Total: -71.42 1.73 -69.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988933892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.455 kcal (2) G-P(sol) polarization free energy of solvation -71.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds