Wall clock time and date at job start Tue Mar 31 2020 17:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.91452 * 2 1 4 4 C 1.54905 * 111.00859 * 123.90596 * 2 1 3 5 5 N 1.47419 * 104.92834 * 155.14142 * 4 2 1 6 6 C 1.34780 * 125.65139 * 155.80015 * 5 4 2 7 7 O 1.21524 * 119.99553 * 359.97438 * 6 5 4 8 8 C 1.48088 * 120.00170 * 179.97438 * 6 5 4 9 9 N 1.32704 * 120.59786 * 359.71645 * 8 6 5 10 10 C 1.31707 * 121.25011 * 179.72277 * 9 8 6 11 11 N 1.31539 * 122.33560 * 0.59137 * 10 9 8 12 12 C 1.33240 * 121.07284 * 359.69968 * 11 10 9 13 13 S 1.75726 * 131.39973 * 180.02562 * 12 11 10 14 14 C 1.75348 * 92.20048 * 179.97438 * 13 12 11 15 15 C 1.32140 * 111.48135 * 0.02562 * 14 13 12 16 16 C 1.40613 * 119.06963 * 359.97438 * 12 11 10 17 17 C 1.47026 * 108.70576 * 335.81449 * 5 4 2 18 18 C 1.54321 * 107.26791 * 1.06162 * 17 5 4 19 19 H 1.08997 * 110.71887 * 140.73107 * 18 17 5 20 20 N 1.46499 * 110.72306 * 263.82936 * 18 17 5 21 21 C 1.36944 * 120.00006 * 273.55092 * 20 18 17 22 22 H 1.08004 * 119.99697 * 359.97438 * 21 20 18 23 23 C 1.38808 * 120.00087 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00181 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99831 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47168 * 90.00162 * 25 23 21 27 27 H 1.48500 * 109.47185 * 209.99656 * 25 23 21 28 28 H 1.48493 * 109.47465 * 329.99895 * 25 23 21 29 29 H 1.09000 * 109.47194 * 297.54464 * 1 2 3 30 30 H 1.09001 * 109.47578 * 57.54908 * 1 2 3 31 31 H 1.09003 * 109.46933 * 177.54637 * 1 2 3 32 32 H 1.09002 * 110.36692 * 36.24515 * 4 2 1 33 33 H 1.08995 * 110.36664 * 274.03317 * 4 2 1 34 34 H 1.08002 * 118.83743 * 180.26809 * 10 9 8 35 35 H 1.08005 * 124.26077 * 179.97438 * 14 13 12 36 36 H 1.08003 * 122.56816 * 179.97438 * 15 14 13 37 37 H 1.08998 * 109.88266 * 120.47537 * 17 5 4 38 38 H 1.09000 * 109.88221 * 241.64354 * 17 5 4 39 39 H 0.97000 * 120.00326 * 93.54571 * 20 18 17 40 40 H 0.96997 * 120.00069 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 1.2002 5 7 3.4280 -1.2429 0.7758 6 6 4.4478 -1.5592 1.5984 7 8 4.2991 -1.4951 2.8028 8 6 5.7493 -1.9847 1.0346 9 7 5.9230 -2.0642 -0.2786 10 6 7.0767 -2.4359 -0.7940 11 7 8.1101 -2.7579 -0.0465 12 6 8.0367 -2.7161 1.2832 13 16 9.2256 -3.0807 2.5247 14 6 8.0976 -2.7002 3.8121 15 6 6.9231 -2.3302 3.3327 16 6 6.8311 -2.3198 1.8888 17 6 3.4707 -1.2757 -0.6935 18 6 2.0901 -0.8106 -1.2023 19 1 2.1970 -0.1761 -2.0821 20 7 1.2316 -1.9608 -1.4964 21 6 1.2886 -2.5611 -2.7259 22 1 1.9661 -2.1863 -3.4789 23 6 0.4756 -3.6512 -3.0044 24 7 -0.3496 -4.1082 -2.0865 25 14 0.5528 -4.4696 -4.6817 26 1 1.5712 -5.5501 -4.6589 27 1 -0.7746 -5.0475 -5.0121 28 1 0.9232 -3.4619 -5.7076 29 1 -0.3633 0.4752 0.9112 30 1 -0.3634 0.5514 -0.8672 31 1 -0.3633 -1.0268 -0.0440 32 1 1.4520 -1.6705 1.4023 33 1 2.1542 -0.1726 2.0841 34 1 7.1762 -2.4830 -1.8683 35 1 8.3328 -2.7614 4.8644 36 1 6.0953 -2.0558 3.9698 37 1 4.2461 -0.6013 -1.0569 38 1 3.6693 -2.2912 -1.0360 39 1 0.6229 -2.2972 -0.8202 40 1 -0.9175 -4.8702 -2.2810 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054655293.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:47 Heat of formation + Delta-G solvation = 47.780912 kcal Electronic energy + Delta-G solvation = -25991.824618 eV Core-core repulsion = 22319.392737 eV Total energy + Delta-G solvation = -3672.431881 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.47651 -40.90923 -39.08457 -37.30393 -35.73801 -35.07572 -33.74959 -32.20942 -31.39277 -29.34010 -28.10732 -26.57090 -25.78242 -25.55513 -23.62669 -22.32983 -21.60101 -20.72618 -19.60431 -19.51315 -18.90186 -17.43956 -17.25539 -17.06885 -16.76897 -16.34169 -16.14780 -15.86839 -15.72032 -15.36344 -15.10936 -14.66944 -14.45819 -14.16811 -13.93527 -13.54514 -13.49399 -13.33019 -13.04953 -12.86832 -12.75600 -12.42978 -12.30863 -12.23051 -12.19456 -12.10290 -11.93167 -11.55151 -11.42878 -11.29297 -10.97885 -10.41671 -10.27821 -9.71729 -9.28897 -8.97110 -7.90069 -5.17468 -1.09870 -0.59832 -0.05474 0.68594 1.03296 1.47198 1.50591 1.51165 1.59200 1.70238 2.53987 2.59593 2.68641 2.99328 3.19844 3.34495 3.42201 3.54397 3.82117 3.91927 3.96695 4.03725 4.10083 4.44200 4.56072 4.60587 4.69852 4.76178 4.85502 4.89542 4.92711 5.01489 5.03796 5.09229 5.18920 5.28075 5.38292 5.47132 5.57918 5.62951 6.31553 6.32218 6.62281 6.85771 7.39416 8.13689 8.36604 9.33336 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.014196 B = 0.003511 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.899993 B = 7972.198444 C = 9246.755464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.098 4.098 3 H 0.111 0.889 4 C 0.113 3.887 5 N -0.582 5.582 6 C 0.571 3.429 7 O -0.553 6.553 8 C 0.172 3.828 9 N -0.493 5.493 10 C 0.300 3.700 11 N -0.482 5.482 12 C 0.058 3.942 13 S 0.212 5.788 14 C -0.167 4.167 15 C -0.120 4.120 16 C -0.146 4.146 17 C 0.103 3.897 18 C 0.158 3.842 19 H 0.081 0.919 20 N -0.722 5.722 21 C -0.231 4.231 22 H 0.082 0.918 23 C -0.073 4.073 24 N -0.970 5.970 25 Si 0.965 3.035 26 H -0.294 1.294 27 H -0.301 1.301 28 H -0.265 1.265 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.241 0.759 35 H 0.221 0.779 36 H 0.162 0.838 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.375 0.625 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.547 7.890 10.020 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 H 0.129 0.871 4 C -0.009 4.009 5 N -0.312 5.312 6 C 0.357 3.643 7 O -0.432 6.432 8 C 0.016 3.984 9 N -0.210 5.210 10 C 0.010 3.990 11 N -0.199 5.199 12 C -0.196 4.196 13 S 0.470 5.530 14 C -0.301 4.301 15 C -0.149 4.149 16 C -0.162 4.162 17 C -0.022 4.022 18 C 0.047 3.953 19 H 0.099 0.901 20 N -0.363 5.363 21 C -0.363 4.363 22 H 0.100 0.900 23 C -0.265 4.265 24 N -0.621 5.621 25 Si 0.796 3.204 26 H -0.222 1.222 27 H -0.228 1.228 28 H -0.190 1.190 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.257 0.743 35 H 0.238 0.762 36 H 0.180 0.820 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.209 0.791 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 19.160 7.341 9.528 22.623 hybrid contribution -2.091 -0.657 -0.038 2.192 sum 17.070 6.683 9.490 20.642 Atomic orbital electron populations 1.21494 0.93174 1.01638 1.02139 1.22641 0.96938 0.99264 0.92954 0.87083 1.22404 0.81491 0.98281 0.98726 1.48395 1.11591 1.62428 1.08780 1.17527 0.82682 0.78649 0.85415 1.90691 1.82869 1.55550 1.14114 1.21513 0.93289 0.94039 0.89538 1.68539 1.26259 1.14316 1.11867 1.25685 0.81692 0.89386 1.02273 1.67998 1.32832 1.15511 1.03540 1.24626 0.97934 1.00709 0.96339 1.84130 1.10071 1.68715 0.90100 1.25970 0.95518 1.03188 1.05430 1.21013 1.00165 1.02686 0.91080 1.20860 0.94719 1.03965 0.96648 1.23095 0.99991 1.02009 0.77148 1.21629 0.88484 0.88800 0.96356 0.90105 1.42622 1.45965 1.33931 1.13736 1.19636 1.16734 1.08379 0.91556 0.90049 1.25441 0.99760 1.00319 1.00994 1.69807 1.28996 1.28191 1.35079 0.85251 0.75958 0.78557 0.80676 1.22187 1.22824 1.18995 0.90873 0.92097 0.94199 0.92858 0.89304 0.74300 0.76230 0.82044 0.89894 0.92463 0.79067 0.94345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 8.99 71.98 0.65 -3.08 16 2 C -0.10 -2.85 3.52 -9.30 -0.03 -2.88 16 3 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 4 C 0.11 3.57 6.35 86.85 0.55 4.12 16 5 N -0.58 -19.92 3.33 -814.94 -2.71 -22.63 16 6 C 0.57 20.05 7.85 86.86 0.68 20.73 16 7 O -0.55 -20.43 14.83 -3.79 -0.06 -20.49 16 8 C 0.17 5.57 6.81 42.52 0.29 5.86 16 9 N -0.49 -14.96 7.02 -188.06 -1.32 -16.28 16 10 C 0.30 7.65 12.25 180.99 2.22 9.87 16 11 N -0.48 -12.77 10.45 -195.91 -2.05 -14.82 16 12 C 0.06 1.50 7.70 85.06 0.66 2.15 16 13 S 0.21 3.61 23.23 -56.49 -1.31 2.30 16 14 C -0.17 -2.57 11.03 66.83 0.74 -1.84 16 15 C -0.12 -2.79 9.63 22.93 0.22 -2.57 16 16 C -0.15 -4.18 6.02 -20.16 -0.12 -4.30 16 17 C 0.10 3.54 5.16 86.73 0.45 3.98 16 18 C 0.16 5.61 3.38 46.28 0.16 5.77 16 19 H 0.08 2.75 8.12 -2.39 -0.02 2.73 16 20 N -0.72 -33.61 4.60 -316.85 -1.46 -35.07 16 21 C -0.23 -12.03 9.98 84.03 0.84 -11.20 16 22 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 23 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 24 N -0.97 -58.07 13.06 21.65 0.28 -57.79 16 25 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 1.46 6.18 -2.39 -0.01 1.44 16 32 H 0.05 1.92 8.04 -2.39 -0.02 1.90 16 33 H 0.09 2.53 8.03 -2.39 -0.02 2.51 16 34 H 0.24 4.20 8.06 -2.91 -0.02 4.18 16 35 H 0.22 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.16 4.01 6.48 -2.91 -0.02 3.99 16 37 H 0.08 2.55 7.45 -2.39 -0.02 2.53 16 38 H 0.06 2.34 7.46 -2.39 -0.02 2.33 16 39 H 0.38 19.12 6.03 -92.71 -0.56 18.56 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -68.40 346.01 1.70 -66.71 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.54 Total: 27.88 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 7.75 Total: 23.04 kcal Atomic # 7 Polarization: -139.33 SS G_CDS: -7.25 Total: -146.58 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.06 Total: -20.49 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.31 Total: 2.30 kcal Total: -68.40 1.70 -66.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054655293.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.487 kcal (2) G-P(sol) polarization free energy of solvation -68.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds