Wall clock time and date at job start Tue Mar 31 2020 17:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 110.91962 * 2 1 4 4 C 1.54908 * 111.00144 * 236.09522 * 2 1 3 5 5 N 1.47427 * 104.83401 * 204.91682 * 4 2 1 6 6 C 1.36933 * 125.64893 * 204.09951 * 5 4 2 7 7 H 1.07999 * 120.00314 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99567 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00413 * 359.97438 * 8 6 5 10 10 Si 1.86810 * 119.99634 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46762 * 90.00236 * 10 8 6 12 12 H 1.48498 * 109.46669 * 210.00071 * 10 8 6 13 13 H 1.48496 * 109.47134 * 330.00052 * 10 8 6 14 14 C 1.47020 * 108.69828 * 24.13310 * 5 4 2 15 15 C 1.54318 * 107.27544 * 358.93751 * 14 5 4 16 16 H 1.09002 * 110.71610 * 96.34458 * 15 14 5 17 17 N 1.46501 * 110.72309 * 219.44325 * 15 14 5 18 18 C 1.34776 * 120.00073 * 273.54738 * 17 15 14 19 19 O 1.21552 * 119.99990 * 359.97438 * 18 17 15 20 20 C 1.47816 * 120.00031 * 180.02562 * 18 17 15 21 21 N 1.28939 * 124.85212 * 180.02562 * 20 18 17 22 22 C 1.33223 * 118.15749 * 179.97438 * 21 20 18 23 23 C 1.41652 * 129.11756 * 179.97438 * 22 21 20 24 24 C 1.36496 * 118.88081 * 180.02562 * 23 22 21 25 25 C 1.38795 * 119.89555 * 359.97438 * 24 23 22 26 26 N 1.31388 * 120.95883 * 0.02562 * 25 24 23 27 27 C 1.33044 * 121.81870 * 359.97438 * 26 25 24 28 28 S 1.75847 * 124.85259 * 0.27714 * 20 18 17 29 29 H 1.09001 * 109.46996 * 296.09670 * 1 2 3 30 30 H 1.09001 * 109.46937 * 56.09695 * 1 2 3 31 31 H 1.09008 * 109.47453 * 176.09725 * 1 2 3 32 32 H 1.09006 * 110.36285 * 86.08270 * 4 2 1 33 33 H 1.08999 * 110.37422 * 323.75655 * 4 2 1 34 34 H 0.96998 * 119.99997 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.87990 * 239.52089 * 14 5 4 36 36 H 1.09001 * 110.00963 * 118.43556 * 14 5 4 37 37 H 0.96994 * 119.99701 * 93.54809 * 17 15 14 38 38 H 1.08001 * 120.56140 * 359.97438 * 23 22 21 39 39 H 1.07994 * 120.05519 * 179.97438 * 24 23 22 40 40 H 1.07999 * 119.51955 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2432 -0.7734 6 6 4.4639 -1.5668 -1.6072 7 1 4.3333 -1.5117 -2.6779 8 6 5.6830 -1.9655 -1.0763 9 7 5.8424 -2.0322 0.2284 10 14 7.0973 -2.4077 -2.2139 11 1 7.9011 -1.1922 -2.4996 12 1 7.9570 -3.4276 -1.5614 13 1 6.5579 -2.9545 -3.4848 14 6 3.4673 -1.2743 0.6960 15 6 2.0861 -0.8080 1.2022 16 1 1.4478 -1.6633 1.4238 17 7 2.2287 0.0494 2.3815 18 6 2.3022 -0.5006 3.6097 19 8 2.2498 -1.7081 3.7390 20 6 2.4454 0.3645 4.7997 21 7 2.5247 -0.0605 6.0144 22 6 2.6523 0.8396 6.9883 23 6 2.7577 0.6352 8.3860 24 6 2.8814 1.7211 9.2036 25 6 2.9025 2.9978 8.6596 26 7 2.8044 3.1815 7.3624 27 6 2.6818 2.1616 6.5168 28 16 2.5257 2.1208 4.7614 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5732 -0.8530 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1560 -0.1720 -2.0837 33 1 1.4518 -1.6704 -1.4025 34 1 6.6944 -2.3105 0.5994 35 1 4.2426 -0.5999 1.0599 36 1 3.6662 -2.2885 1.0423 37 1 2.2701 1.0130 2.2784 38 1 2.7397 -0.3631 8.7979 39 1 2.9628 1.5872 10.2721 40 1 3.0011 3.8527 9.3122 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079856667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:56 Heat of formation + Delta-G solvation = 69.641612 kcal Electronic energy + Delta-G solvation = -25223.890090 eV Core-core repulsion = 21552.406160 eV Total energy + Delta-G solvation = -3671.483930 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.19251 -39.78529 -38.04126 -37.21073 -34.10403 -32.91475 -32.74395 -30.64527 -30.40118 -28.25428 -26.21527 -25.60044 -24.58872 -23.72409 -22.59075 -20.87523 -20.12505 -19.87635 -18.96193 -17.64172 -17.47163 -16.87660 -16.42489 -15.86507 -15.71573 -15.39275 -14.98318 -14.45969 -14.26039 -13.78101 -13.71887 -13.28655 -13.15190 -12.87368 -12.85297 -12.76889 -12.40123 -12.02740 -11.74210 -11.38668 -11.06092 -10.96805 -10.84461 -10.77322 -10.60012 -10.44701 -10.08396 -9.99881 -9.95334 -9.71827 -9.50303 -9.25570 -8.91407 -8.72556 -8.60414 -6.85343 -5.69836 -3.05344 -0.37579 0.57982 0.59179 1.20815 1.68575 2.69373 3.01837 3.34449 3.41164 3.45974 3.48688 3.81610 3.99840 4.20353 4.43207 4.49411 4.60043 4.78180 4.99628 5.15474 5.26007 5.37472 5.40781 5.54251 5.55476 5.68874 5.90293 5.91784 5.94486 6.08907 6.11209 6.27219 6.41962 6.54197 6.58876 6.85353 7.04255 7.20642 7.43362 7.55101 7.66526 7.82849 8.16567 8.24976 9.20459 9.81382 10.45392 11.40981 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.002987 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.398042 B = 9371.888858 C =10280.376912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 H 0.080 0.920 4 C 0.141 3.859 5 N -0.605 5.605 6 C -0.231 4.231 7 H 0.080 0.920 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.171 3.829 15 C 0.121 3.879 16 H 0.094 0.906 17 N -0.697 5.697 18 C 0.589 3.411 19 O -0.484 6.484 20 C 0.083 3.917 21 N -0.401 5.401 22 C 0.031 3.969 23 C -0.006 4.006 24 C -0.168 4.168 25 C 0.145 3.855 26 N -0.447 5.447 27 C 0.026 3.974 28 S 0.144 5.856 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.024 0.976 34 H 0.253 0.747 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.396 0.604 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.189 11.616 15.568 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.134 4.134 3 H 0.098 0.902 4 C 0.015 3.985 5 N -0.332 5.332 6 C -0.359 4.359 7 H 0.098 0.902 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.046 3.954 15 C 0.017 3.983 16 H 0.112 0.888 17 N -0.348 5.348 18 C 0.368 3.632 19 O -0.356 6.356 20 C -0.203 4.203 21 N -0.116 5.116 22 C -0.095 4.095 23 C -0.035 4.035 24 C -0.191 4.191 25 C -0.028 4.028 26 N -0.157 5.157 27 C -0.222 4.222 28 S 0.398 5.602 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.230 0.770 38 H 0.170 0.830 39 H 0.170 0.830 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -10.061 11.580 14.409 21.046 hybrid contribution 1.048 -0.668 0.808 1.482 sum -9.013 10.912 15.216 20.781 Atomic orbital electron populations 1.21724 0.94800 1.02004 1.01163 1.22644 0.95023 0.99634 0.96070 0.90186 1.21598 0.87611 0.95074 0.94238 1.44389 1.07918 1.79291 1.01618 1.19039 0.89265 1.38725 0.88916 0.90238 1.24835 0.97907 1.01619 0.96012 1.69953 1.24227 1.53168 1.09208 0.86117 0.82301 0.77801 0.79511 1.21626 1.21675 1.20668 1.21503 0.89619 1.00715 0.83594 1.22685 1.00992 0.92601 0.82004 0.88792 1.45753 1.73416 1.10382 1.05276 1.16744 0.78690 0.86663 0.81134 1.90878 1.47270 1.12710 1.84756 1.27394 1.03513 0.93828 0.95583 1.65648 1.11303 1.36149 0.98462 1.19976 1.06389 0.87805 0.95350 1.21074 0.92579 1.01078 0.88733 1.21780 1.02438 0.92986 1.01891 1.23055 0.92393 0.97323 0.89985 1.67155 1.12499 1.32230 1.03863 1.24879 1.05127 0.93045 0.99116 1.85076 1.71466 1.05513 0.98119 0.93032 0.92550 0.92404 0.93760 0.95834 0.93662 0.92971 0.93015 0.76965 0.83033 0.83025 0.80977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.31 37.16 0.35 -1.39 16 2 C -0.11 -1.81 3.25 -88.47 -0.29 -2.09 16 3 H 0.08 1.21 8.00 -51.93 -0.42 0.79 16 4 C 0.14 2.77 6.70 -2.53 -0.02 2.75 16 5 N -0.61 -15.22 3.39 -170.07 -0.58 -15.79 16 6 C -0.23 -6.40 10.28 -15.06 -0.15 -6.55 16 7 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -27.42 10.31 55.49 0.57 -26.85 16 10 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.17 4.18 5.12 -3.07 -0.02 4.16 16 15 C 0.12 2.24 2.70 -66.10 -0.18 2.06 16 16 H 0.09 1.80 7.59 -51.93 -0.39 1.41 16 17 N -0.70 -11.21 5.13 -52.98 -0.27 -11.48 16 18 C 0.59 10.48 7.83 -12.34 -0.10 10.39 16 19 O -0.48 -10.51 16.77 5.32 0.09 -10.42 16 20 C 0.08 1.30 7.40 -14.85 -0.11 1.19 16 21 N -0.40 -6.46 10.45 -8.53 -0.09 -6.55 16 22 C 0.03 0.42 6.95 -85.15 -0.59 -0.17 16 23 C -0.01 -0.06 10.18 -38.91 -0.40 -0.45 16 24 C -0.17 -1.10 10.00 -40.00 -0.40 -1.50 16 25 C 0.14 1.10 11.18 -17.54 -0.20 0.90 16 26 N -0.45 -5.15 10.38 -11.60 -0.12 -5.27 16 27 C 0.03 0.34 7.72 -16.22 -0.13 0.21 16 28 S 0.14 1.80 22.43 -107.50 -2.41 -0.61 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.73 8.07 -51.92 -0.42 0.31 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.02 0.46 7.98 -51.93 -0.41 0.05 16 34 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.05 1.40 7.27 -51.93 -0.38 1.03 16 36 H 0.05 1.47 7.50 -51.93 -0.39 1.08 16 37 H 0.40 5.24 7.61 -40.82 -0.31 4.93 16 38 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.15 0.42 8.06 -52.49 -0.42 -0.01 16 40 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -35.22 352.64 -9.64 -44.86 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -4.80 Total: 0.39 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -2.32 Total: 9.21 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: -0.49 Total: -65.94 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.41 Total: -0.61 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.22 -9.64 -44.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079856667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.499 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds