Wall clock time and date at job start Tue Mar 31 2020 17:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 110.91962 * 2 1 4 4 C 1.54908 * 111.00144 * 236.09522 * 2 1 3 5 5 N 1.47427 * 104.83401 * 204.91682 * 4 2 1 6 6 C 1.36933 * 125.64893 * 204.09951 * 5 4 2 7 7 H 1.07999 * 120.00314 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99567 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00413 * 359.97438 * 8 6 5 10 10 Si 1.86810 * 119.99634 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46762 * 90.00236 * 10 8 6 12 12 H 1.48498 * 109.46669 * 210.00071 * 10 8 6 13 13 H 1.48496 * 109.47134 * 330.00052 * 10 8 6 14 14 C 1.47020 * 108.69828 * 24.13310 * 5 4 2 15 15 C 1.54318 * 107.27544 * 358.93751 * 14 5 4 16 16 H 1.09002 * 110.71610 * 96.34458 * 15 14 5 17 17 N 1.46501 * 110.72309 * 219.44325 * 15 14 5 18 18 C 1.34776 * 120.00073 * 273.54738 * 17 15 14 19 19 O 1.21552 * 119.99990 * 359.97438 * 18 17 15 20 20 C 1.47816 * 120.00031 * 180.02562 * 18 17 15 21 21 N 1.28939 * 124.85212 * 180.02562 * 20 18 17 22 22 C 1.33223 * 118.15749 * 179.97438 * 21 20 18 23 23 C 1.41652 * 129.11756 * 179.97438 * 22 21 20 24 24 C 1.36496 * 118.88081 * 180.02562 * 23 22 21 25 25 C 1.38795 * 119.89555 * 359.97438 * 24 23 22 26 26 N 1.31388 * 120.95883 * 0.02562 * 25 24 23 27 27 C 1.33044 * 121.81870 * 359.97438 * 26 25 24 28 28 S 1.75847 * 124.85259 * 0.27714 * 20 18 17 29 29 H 1.09001 * 109.46996 * 296.09670 * 1 2 3 30 30 H 1.09001 * 109.46937 * 56.09695 * 1 2 3 31 31 H 1.09008 * 109.47453 * 176.09725 * 1 2 3 32 32 H 1.09006 * 110.36285 * 86.08270 * 4 2 1 33 33 H 1.08999 * 110.37422 * 323.75655 * 4 2 1 34 34 H 0.96998 * 119.99997 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.87990 * 239.52089 * 14 5 4 36 36 H 1.09001 * 110.00963 * 118.43556 * 14 5 4 37 37 H 0.96994 * 119.99701 * 93.54809 * 17 15 14 38 38 H 1.08001 * 120.56140 * 359.97438 * 23 22 21 39 39 H 1.07994 * 120.05519 * 179.97438 * 24 23 22 40 40 H 1.07999 * 119.51955 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2432 -0.7734 6 6 4.4639 -1.5668 -1.6072 7 1 4.3333 -1.5117 -2.6779 8 6 5.6830 -1.9655 -1.0763 9 7 5.8424 -2.0322 0.2284 10 14 7.0973 -2.4077 -2.2139 11 1 7.9011 -1.1922 -2.4996 12 1 7.9570 -3.4276 -1.5614 13 1 6.5579 -2.9545 -3.4848 14 6 3.4673 -1.2743 0.6960 15 6 2.0861 -0.8080 1.2022 16 1 1.4478 -1.6633 1.4238 17 7 2.2287 0.0494 2.3815 18 6 2.3022 -0.5006 3.6097 19 8 2.2498 -1.7081 3.7390 20 6 2.4454 0.3645 4.7997 21 7 2.5247 -0.0605 6.0144 22 6 2.6523 0.8396 6.9883 23 6 2.7577 0.6352 8.3860 24 6 2.8814 1.7211 9.2036 25 6 2.9025 2.9978 8.6596 26 7 2.8044 3.1815 7.3624 27 6 2.6818 2.1616 6.5168 28 16 2.5257 2.1208 4.7614 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5732 -0.8530 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1560 -0.1720 -2.0837 33 1 1.4518 -1.6704 -1.4025 34 1 6.6944 -2.3105 0.5994 35 1 4.2426 -0.5999 1.0599 36 1 3.6662 -2.2885 1.0423 37 1 2.2701 1.0130 2.2784 38 1 2.7397 -0.3631 8.7979 39 1 2.9628 1.5872 10.2721 40 1 3.0011 3.8527 9.3122 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079856667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:55 Heat of formation + Delta-G solvation = 42.895976 kcal Electronic energy + Delta-G solvation = -25225.049868 eV Core-core repulsion = 21552.406160 eV Total energy + Delta-G solvation = -3672.643708 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.08726 -41.17298 -39.39574 -38.43504 -35.80402 -34.43405 -33.63776 -32.19289 -31.57305 -29.82324 -27.65576 -27.08229 -25.58789 -25.06484 -23.71703 -22.31011 -21.73833 -21.23444 -19.98081 -18.94729 -18.69260 -18.39360 -17.43499 -17.16992 -16.96113 -16.75593 -16.22921 -15.83717 -15.61492 -15.54423 -14.83907 -14.53640 -14.41687 -14.11121 -13.95319 -13.80277 -13.66532 -13.34279 -13.26841 -13.06044 -12.88327 -12.59590 -12.24205 -12.18868 -11.88315 -11.86450 -11.72954 -11.65253 -11.48467 -11.18612 -10.75319 -10.46055 -10.34562 -10.08044 -9.79626 -8.93252 -7.85096 -5.22795 -1.33218 -0.38073 -0.13767 0.20890 0.69547 1.42486 1.45211 1.47428 1.55952 1.79773 2.48622 2.51491 2.84330 3.18253 3.33883 3.36469 3.48918 3.61354 3.74684 3.83581 3.99713 4.06867 4.23949 4.41987 4.43007 4.59349 4.70148 4.72038 4.90037 4.95045 4.95584 5.07992 5.08923 5.28988 5.35534 5.44353 5.49916 5.53055 5.73057 5.99496 6.15781 6.29689 6.46987 6.81713 7.06317 7.75191 8.38552 9.24243 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.002987 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.398042 B = 9371.888858 C =10280.376912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.094 4.094 3 H 0.095 0.905 4 C 0.133 3.867 5 N -0.627 5.627 6 C -0.239 4.239 7 H 0.091 0.909 8 C -0.071 4.071 9 N -0.954 5.954 10 Si 0.980 3.020 11 H -0.283 1.283 12 H -0.300 1.300 13 H -0.265 1.265 14 C 0.186 3.814 15 C 0.136 3.864 16 H 0.086 0.914 17 N -0.683 5.683 18 C 0.590 3.410 19 O -0.537 6.537 20 C 0.044 3.956 21 N -0.424 5.424 22 C -0.002 4.002 23 C -0.017 4.017 24 C -0.143 4.143 25 C 0.159 3.841 26 N -0.474 5.474 27 C 0.011 3.989 28 S 0.186 5.814 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.030 0.970 34 H 0.243 0.757 35 H 0.018 0.982 36 H -0.005 1.005 37 H 0.412 0.588 38 H 0.167 0.833 39 H 0.203 0.797 40 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.368 14.479 16.963 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.114 4.114 3 H 0.114 0.886 4 C 0.008 3.992 5 N -0.354 5.354 6 C -0.367 4.367 7 H 0.109 0.891 8 C -0.264 4.264 9 N -0.603 5.603 10 Si 0.808 3.192 11 H -0.210 1.210 12 H -0.227 1.227 13 H -0.190 1.190 14 C 0.059 3.941 15 C 0.031 3.969 16 H 0.104 0.896 17 N -0.335 5.335 18 C 0.372 3.628 19 O -0.413 6.413 20 C -0.241 4.241 21 N -0.140 5.140 22 C -0.129 4.129 23 C -0.046 4.046 24 C -0.165 4.165 25 C -0.013 4.013 26 N -0.186 5.186 27 C -0.236 4.236 28 S 0.440 5.560 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.036 0.964 36 H 0.013 0.987 37 H 0.249 0.751 38 H 0.184 0.816 39 H 0.220 0.780 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -11.288 14.497 15.757 24.204 hybrid contribution 1.417 -1.436 0.610 2.108 sum -9.871 13.060 16.367 23.149 Atomic orbital electron populations 1.21693 0.91331 1.02626 1.03253 1.22592 0.97602 0.99050 0.92126 0.88645 1.21883 0.85079 0.95931 0.96314 1.44708 1.09647 1.79280 1.01742 1.19516 0.89994 1.37371 0.89868 0.89133 1.25737 1.00778 1.02488 0.97387 1.70230 1.24104 1.54779 1.11165 0.85048 0.78893 0.77239 0.77981 1.20997 1.22706 1.18960 1.21113 0.92263 0.96886 0.83827 1.22298 0.97253 0.93619 0.83759 0.89622 1.45519 1.72782 1.10922 1.04308 1.17101 0.77252 0.86389 0.82098 1.90831 1.49664 1.15043 1.85757 1.26698 1.07047 0.95593 0.94718 1.65594 1.10944 1.38218 0.99233 1.20391 1.08393 0.87638 0.96475 1.21517 0.92563 1.03136 0.87346 1.22343 0.98913 0.91389 1.03866 1.24023 0.88720 0.99481 0.89048 1.67257 1.14198 1.31705 1.05427 1.25010 1.05638 0.93454 0.99485 1.84650 1.70710 1.01902 0.98701 0.91303 0.90005 0.92667 0.92245 0.95233 0.94755 0.96384 0.98719 0.75081 0.81582 0.78048 0.76371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.31 71.98 0.67 -2.23 16 2 C -0.09 -2.87 3.25 -9.40 -0.03 -2.90 16 3 H 0.10 2.66 8.00 -2.39 -0.02 2.64 16 4 C 0.13 5.12 6.70 86.85 0.58 5.70 16 5 N -0.63 -32.49 3.39 -691.99 -2.35 -34.84 16 6 C -0.24 -13.49 10.28 84.04 0.86 -12.62 16 7 H 0.09 4.79 7.83 -2.91 -0.02 4.76 16 8 C -0.07 -4.18 5.49 84.86 0.47 -3.72 16 9 N -0.95 -60.39 10.31 21.65 0.22 -60.17 16 10 Si 0.98 46.98 29.55 68.60 2.03 49.01 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 C 0.19 9.67 5.12 86.73 0.44 10.12 16 15 C 0.14 5.21 2.70 46.18 0.12 5.34 16 16 H 0.09 3.46 7.59 -2.39 -0.02 3.45 16 17 N -0.68 -22.95 5.13 -439.81 -2.25 -25.21 16 18 C 0.59 22.56 7.83 86.78 0.68 23.24 16 19 O -0.54 -25.39 16.77 -3.88 -0.07 -25.46 16 20 C 0.04 1.44 7.40 87.65 0.65 2.09 16 21 N -0.42 -14.35 10.45 -180.89 -1.89 -16.24 16 22 C 0.00 -0.06 6.95 40.30 0.28 0.22 16 23 C -0.02 -0.29 10.18 22.71 0.23 -0.06 16 24 C -0.14 -1.24 10.00 22.00 0.22 -1.02 16 25 C 0.16 1.72 11.18 84.89 0.95 2.67 16 26 N -0.47 -9.78 10.38 -190.60 -1.98 -11.76 16 27 C 0.01 0.27 7.72 85.03 0.66 0.93 16 28 S 0.19 4.67 22.43 -56.49 -1.27 3.41 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.27 8.07 -2.38 -0.02 1.25 16 32 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.03 1.12 7.98 -2.39 -0.02 1.11 16 34 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.02 1.04 7.27 -2.38 -0.02 1.03 16 36 H -0.01 -0.34 7.50 -2.39 -0.02 -0.36 16 37 H 0.41 11.00 7.61 -92.71 -0.71 10.30 16 38 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.20 -0.23 8.06 -2.91 -0.02 -0.26 16 40 H 0.22 0.24 8.06 -2.91 -0.02 0.22 16 Total: -1.00 -85.22 352.64 -0.39 -85.61 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 0.38 Total: 7.90 kcal Atomic # 6 Polarization: 20.96 SS G_CDS: 6.79 Total: 27.75 kcal Atomic # 7 Polarization: -139.97 SS G_CDS: -8.25 Total: -148.22 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.07 Total: -25.46 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Atomic # 16 Polarization: 4.67 SS G_CDS: -1.27 Total: 3.41 kcal Total: -85.22 -0.39 -85.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079856667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.507 kcal (2) G-P(sol) polarization free energy of solvation -85.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds