Wall clock time and date at job start Tue Mar 31 2020 16:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34181 * 125.43430 * 2 1 4 4 C 1.47025 * 105.94661 * 180.14259 * 3 2 1 5 5 C 1.47382 * 127.18715 * 179.83157 * 4 3 2 6 6 O 1.21618 * 119.99821 * 195.60153 * 5 4 3 7 7 N 1.34775 * 120.00109 * 15.59448 * 5 4 3 8 8 C 1.48151 * 127.83854 * 178.02580 * 7 5 4 9 9 C 1.54383 * 104.72138 * 219.53332 * 8 7 5 10 10 H 1.09003 * 110.34350 * 95.06185 * 9 8 7 11 11 C 1.53000 * 110.34054 * 217.32115 * 9 8 7 12 12 F 1.39901 * 109.47279 * 58.54664 * 11 9 8 13 13 F 1.39906 * 109.47324 * 178.54724 * 11 9 8 14 14 F 1.39897 * 109.47316 * 298.54153 * 11 9 8 15 15 C 1.54468 * 104.86909 * 336.26684 * 9 8 7 16 16 H 1.09000 * 110.34299 * 240.97286 * 15 9 8 17 17 N 1.46509 * 110.41463 * 118.77509 * 15 9 8 18 18 C 1.36933 * 120.00115 * 157.94136 * 17 15 9 19 19 H 1.08008 * 119.99952 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00437 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99297 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00388 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47002 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47089 * 120.00235 * 22 20 18 25 25 H 1.48493 * 109.47379 * 240.00187 * 22 20 18 26 26 C 1.48147 * 127.84065 * 358.03448 * 7 5 4 27 27 C 1.36410 * 105.61876 * 359.56496 * 4 3 2 28 28 O 1.33649 * 108.39827 * 0.26604 * 27 4 3 29 29 H 1.09002 * 109.47143 * 180.32123 * 1 2 3 30 30 H 1.09002 * 109.47164 * 300.32130 * 1 2 3 31 31 H 1.08992 * 109.46955 * 60.31707 * 1 2 3 32 32 H 1.07996 * 127.02842 * 359.96959 * 3 2 1 33 33 H 1.09000 * 110.40522 * 338.37272 * 8 7 5 34 34 H 1.08998 * 110.40824 * 100.68390 * 8 7 5 35 35 H 0.96993 * 119.99705 * 337.94386 * 17 15 9 36 36 H 0.97001 * 119.99498 * 180.02562 * 21 20 18 37 37 H 1.09006 * 110.40189 * 259.19564 * 26 7 5 38 38 H 1.09002 * 110.40673 * 21.50455 * 26 7 5 39 39 H 1.08001 * 125.80249 * 180.25712 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6028 -0.0035 5 6 4.9025 1.4125 -0.0083 6 8 5.9670 0.8985 -0.2941 7 7 4.8489 2.7225 0.3039 8 6 5.9738 3.6824 0.3925 9 6 5.6452 4.5598 1.6195 10 1 6.1467 4.1735 2.5068 11 6 6.0589 6.0102 1.3623 12 9 5.3916 6.4920 0.2310 13 9 5.7232 6.7946 2.4711 14 9 7.4404 6.0704 1.1497 15 6 4.1125 4.4565 1.7816 16 1 3.6536 5.4400 1.6808 17 7 3.7745 3.8685 3.0803 18 6 2.5392 4.0858 3.6296 19 1 1.8138 4.6904 3.1053 20 6 2.2187 3.5284 4.8598 21 7 3.1025 2.7913 5.4985 22 14 0.5338 3.8255 5.6095 23 1 -0.2689 4.6815 4.6995 24 1 -0.1578 2.5257 5.8037 25 1 0.6882 4.5048 6.9208 26 6 3.6517 3.5293 0.6365 27 6 3.5790 -0.7582 0.0047 28 8 2.2852 -1.0935 0.0066 29 1 -0.3633 -1.0277 0.0058 30 1 -0.3633 0.5188 0.8871 31 1 -0.3633 0.5089 -0.8928 32 1 1.9596 2.1230 -0.0005 33 1 6.9142 3.1528 0.5449 34 1 6.0243 4.2931 -0.5090 35 1 4.4258 3.3253 3.5510 36 1 2.8785 2.4014 6.3579 37 1 3.3381 4.1174 -0.2260 38 1 2.8394 2.8839 0.9711 39 1 4.4103 -1.4476 0.0088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099243229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:30 Heat of formation + Delta-G solvation = -144.962619 kcal Electronic energy + Delta-G solvation = -29740.850329 eV Core-core repulsion = 25043.158099 eV Total energy + Delta-G solvation = -4697.692230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.92101 -47.43294 -47.33537 -42.43620 -39.64869 -37.49012 -34.09569 -33.25831 -32.12399 -31.57090 -30.54317 -27.71767 -26.61442 -26.07893 -24.40786 -23.09880 -21.85045 -21.20945 -20.23580 -18.79001 -18.32977 -18.02524 -17.93306 -17.07070 -16.68535 -16.46562 -16.12879 -15.38508 -15.14392 -14.80670 -14.36147 -14.24748 -13.91883 -13.81605 -13.74501 -13.59457 -13.50342 -13.37181 -13.29655 -13.15808 -13.08842 -12.99540 -12.77795 -12.18317 -11.82482 -11.79675 -11.60853 -11.09879 -10.96503 -10.91193 -10.79366 -10.18798 -9.91351 -9.86356 -9.58244 -9.21748 -8.62647 -8.36893 -7.18569 -5.93271 -3.25548 1.54503 2.16181 2.76955 2.94554 3.19129 3.32892 3.38736 3.41605 3.52518 3.96878 4.07809 4.20181 4.46116 4.56784 4.75431 4.87480 5.04334 5.04908 5.23670 5.28408 5.32963 5.45281 5.46360 5.46887 5.53995 5.67253 5.73186 5.81399 5.92468 6.01685 6.09539 6.15626 6.25461 6.46090 6.55179 7.13950 7.54055 7.71789 8.21606 8.33923 9.34620 9.84210 10.19595 11.28261 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.007845 B = 0.006149 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3568.290398 B = 4552.620951 C = 7223.253633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.014 4.014 3 C -0.184 4.184 4 C -0.226 4.226 5 C 0.616 3.384 6 O -0.555 6.555 7 N -0.603 5.603 8 C 0.119 3.881 9 C -0.166 4.166 10 H 0.129 0.871 11 C 0.465 3.535 12 F -0.183 7.183 13 F -0.173 7.173 14 F -0.187 7.187 15 C 0.179 3.821 16 H 0.076 0.924 17 N -0.709 5.709 18 C -0.252 4.252 19 H 0.075 0.925 20 C -0.003 4.003 21 N -0.924 5.924 22 Si 0.907 3.093 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.057 3.943 27 C 0.042 3.958 28 O -0.176 6.176 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.166 0.834 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.273 -0.474 -12.349 12.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.203 4.203 4 C -0.230 4.230 5 C 0.407 3.593 6 O -0.435 6.435 7 N -0.335 5.335 8 C -0.004 4.004 9 C -0.187 4.187 10 H 0.147 0.853 11 C 0.410 3.590 12 F -0.165 7.165 13 F -0.154 7.154 14 F -0.168 7.168 15 C 0.066 3.934 16 H 0.094 0.906 17 N -0.349 5.349 18 C -0.382 4.382 19 H 0.093 0.907 20 C -0.201 4.201 21 N -0.571 5.571 22 Si 0.738 3.262 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.217 1.217 26 C -0.068 4.068 27 C -0.028 4.028 28 O -0.072 6.072 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.184 0.816 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.020 -1.052 -12.441 12.486 hybrid contribution -0.407 0.477 0.785 1.004 sum -0.426 -0.575 -11.657 11.679 Atomic orbital electron populations 1.20339 0.84843 1.03922 1.03937 1.22300 0.94105 0.83749 1.06123 1.22980 0.90631 0.99960 1.06753 1.21201 0.93650 0.93861 1.14267 1.16780 0.87162 0.79501 0.75865 1.90766 1.30756 1.71234 1.50774 1.48482 1.09615 1.07415 1.67945 1.22093 0.91921 0.90639 0.95749 1.23893 1.02968 0.89130 1.02746 0.85315 1.20280 0.74380 0.90296 0.74040 1.93154 1.80561 1.90080 1.52706 1.93235 1.92057 1.77100 1.53048 1.93169 1.31750 1.97113 1.94816 1.21072 0.87606 0.96591 0.88123 0.90610 1.42410 1.16054 1.59816 1.16645 1.19211 0.90771 1.27016 1.01234 0.90726 1.24768 0.98129 0.99736 0.97427 1.69673 1.34105 1.37170 1.16118 0.86131 0.83525 0.77364 0.79189 1.20334 1.21772 1.21706 1.24046 0.89557 0.95048 0.98190 1.24205 0.83734 0.95241 0.99655 1.83733 1.16500 1.35600 1.71351 0.90681 0.89157 0.89710 0.81636 0.88790 0.90310 0.77799 0.93291 0.91601 0.87117 0.76863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.40 36.01 0.37 -0.34 16 2 C -0.01 -0.20 7.28 -35.74 -0.26 -0.46 16 3 C -0.18 -2.74 9.18 -37.45 -0.34 -3.09 16 4 C -0.23 -3.69 6.17 -103.27 -0.64 -4.33 16 5 C 0.62 11.02 7.90 -12.54 -0.10 10.92 16 6 O -0.56 -11.03 17.24 5.26 0.09 -10.93 16 7 N -0.60 -9.90 3.32 -170.59 -0.57 -10.46 16 8 C 0.12 1.74 6.32 -2.41 -0.02 1.73 16 9 C -0.17 -2.55 2.85 -89.12 -0.25 -2.80 16 10 H 0.13 2.08 7.65 -51.93 -0.40 1.68 16 11 C 0.46 6.77 2.51 37.16 0.09 6.87 16 12 F -0.18 -2.56 16.05 2.25 0.04 -2.52 16 13 F -0.17 -2.86 17.08 2.25 0.04 -2.82 16 14 F -0.19 -2.61 17.11 2.25 0.04 -2.57 16 15 C 0.18 3.15 3.00 -66.43 -0.20 2.95 16 16 H 0.08 1.34 7.37 -51.93 -0.38 0.95 16 17 N -0.71 -15.98 5.14 -51.97 -0.27 -16.24 16 18 C -0.25 -6.31 9.97 -15.06 -0.15 -6.46 16 19 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 20 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 21 N -0.92 -26.37 13.06 55.49 0.72 -25.64 16 22 Si 0.91 21.00 29.55 -169.99 -5.02 15.97 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 26 C 0.06 0.91 5.73 -2.41 -0.01 0.89 16 27 C 0.04 0.60 11.94 30.07 0.36 0.96 16 28 O -0.18 -2.49 10.52 7.66 0.08 -2.41 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.17 2.29 5.55 -52.49 -0.29 2.00 16 33 H 0.09 1.37 7.90 -51.93 -0.41 0.96 16 34 H 0.08 1.02 7.32 -51.93 -0.38 0.64 16 35 H 0.39 9.59 7.51 -40.82 -0.31 9.28 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.11 1.91 4.46 -51.93 -0.23 1.68 16 39 H 0.21 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -30.68 343.66 -4.97 -35.65 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -4.06 Total: 10.15 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -1.24 Total: 6.66 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.11 Total: -52.35 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.17 Total: -13.35 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 0.11 Total: -7.91 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.68 -4.97 -35.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099243229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.311 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds