Wall clock time and date at job start Tue Mar 31 2020 16:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34181 * 125.43430 * 2 1 4 4 C 1.47025 * 105.94661 * 180.14259 * 3 2 1 5 5 C 1.47382 * 127.18715 * 179.83157 * 4 3 2 6 6 O 1.21618 * 119.99821 * 195.60153 * 5 4 3 7 7 N 1.34775 * 120.00109 * 15.59448 * 5 4 3 8 8 C 1.48151 * 127.83854 * 178.02580 * 7 5 4 9 9 C 1.54383 * 104.72138 * 219.53332 * 8 7 5 10 10 H 1.09003 * 110.34350 * 95.06185 * 9 8 7 11 11 C 1.53000 * 110.34054 * 217.32115 * 9 8 7 12 12 F 1.39901 * 109.47279 * 58.54664 * 11 9 8 13 13 F 1.39906 * 109.47324 * 178.54724 * 11 9 8 14 14 F 1.39897 * 109.47316 * 298.54153 * 11 9 8 15 15 C 1.54468 * 104.86909 * 336.26684 * 9 8 7 16 16 H 1.09000 * 110.34299 * 240.97286 * 15 9 8 17 17 N 1.46509 * 110.41463 * 118.77509 * 15 9 8 18 18 C 1.36933 * 120.00115 * 157.94136 * 17 15 9 19 19 H 1.08008 * 119.99952 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00437 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99297 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00388 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47002 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47089 * 120.00235 * 22 20 18 25 25 H 1.48493 * 109.47379 * 240.00187 * 22 20 18 26 26 C 1.48147 * 127.84065 * 358.03448 * 7 5 4 27 27 C 1.36410 * 105.61876 * 359.56496 * 4 3 2 28 28 O 1.33649 * 108.39827 * 0.26604 * 27 4 3 29 29 H 1.09002 * 109.47143 * 180.32123 * 1 2 3 30 30 H 1.09002 * 109.47164 * 300.32130 * 1 2 3 31 31 H 1.08992 * 109.46955 * 60.31707 * 1 2 3 32 32 H 1.07996 * 127.02842 * 359.96959 * 3 2 1 33 33 H 1.09000 * 110.40522 * 338.37272 * 8 7 5 34 34 H 1.08998 * 110.40824 * 100.68390 * 8 7 5 35 35 H 0.96993 * 119.99705 * 337.94386 * 17 15 9 36 36 H 0.97001 * 119.99498 * 180.02562 * 21 20 18 37 37 H 1.09006 * 110.40189 * 259.19564 * 26 7 5 38 38 H 1.09002 * 110.40673 * 21.50455 * 26 7 5 39 39 H 1.08001 * 125.80249 * 180.25712 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6028 -0.0035 5 6 4.9025 1.4125 -0.0083 6 8 5.9670 0.8985 -0.2941 7 7 4.8489 2.7225 0.3039 8 6 5.9738 3.6824 0.3925 9 6 5.6452 4.5598 1.6195 10 1 6.1467 4.1735 2.5068 11 6 6.0589 6.0102 1.3623 12 9 5.3916 6.4920 0.2310 13 9 5.7232 6.7946 2.4711 14 9 7.4404 6.0704 1.1497 15 6 4.1125 4.4565 1.7816 16 1 3.6536 5.4400 1.6808 17 7 3.7745 3.8685 3.0803 18 6 2.5392 4.0858 3.6296 19 1 1.8138 4.6904 3.1053 20 6 2.2187 3.5284 4.8598 21 7 3.1025 2.7913 5.4985 22 14 0.5338 3.8255 5.6095 23 1 -0.2689 4.6815 4.6995 24 1 -0.1578 2.5257 5.8037 25 1 0.6882 4.5048 6.9208 26 6 3.6517 3.5293 0.6365 27 6 3.5790 -0.7582 0.0047 28 8 2.2852 -1.0935 0.0066 29 1 -0.3633 -1.0277 0.0058 30 1 -0.3633 0.5188 0.8871 31 1 -0.3633 0.5089 -0.8928 32 1 1.9596 2.1230 -0.0005 33 1 6.9142 3.1528 0.5449 34 1 6.0243 4.2931 -0.5090 35 1 4.4258 3.3253 3.5510 36 1 2.8785 2.4014 6.3579 37 1 3.3381 4.1174 -0.2260 38 1 2.8394 2.8839 0.9711 39 1 4.4103 -1.4476 0.0088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099243229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:30 Heat of formation + Delta-G solvation = -163.887409 kcal Electronic energy + Delta-G solvation = -29741.670970 eV Core-core repulsion = 25043.158099 eV Total energy + Delta-G solvation = -4698.512871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.12788 -48.60089 -48.58035 -43.54201 -40.98847 -38.90782 -35.82660 -34.43440 -33.40330 -32.83691 -32.07362 -29.22341 -27.61007 -27.29034 -26.09593 -24.49945 -23.14965 -22.40583 -21.57005 -20.02027 -19.59581 -19.40960 -19.21507 -18.49051 -18.06226 -17.73194 -17.24605 -16.75520 -16.56430 -16.28661 -15.67240 -15.48301 -15.34656 -15.19220 -15.02118 -14.98179 -14.79124 -14.70999 -14.62532 -14.34066 -14.10162 -13.89042 -13.74401 -13.57052 -13.31978 -12.98103 -12.84394 -12.75184 -12.60935 -12.35849 -12.15537 -12.01978 -11.74805 -11.29104 -11.04377 -10.76950 -9.98398 -9.48064 -9.03672 -7.93612 -5.24325 0.35805 1.05276 1.50101 1.51300 1.53256 1.60798 1.84193 1.99352 2.23784 2.54489 2.75331 2.81684 2.97139 3.38220 3.44115 3.61367 3.66543 3.82257 3.88097 3.98169 3.99782 4.19596 4.34929 4.45280 4.48742 4.52460 4.68562 4.72877 4.76559 4.80922 4.87887 4.93961 5.14296 5.21806 5.43180 5.55542 6.04070 6.24206 6.38854 6.99170 7.33091 7.99527 8.24504 9.29282 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.007845 B = 0.006149 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3568.290398 B = 4552.620951 C = 7223.253633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.014 4.014 3 C -0.202 4.202 4 C -0.258 4.258 5 C 0.610 3.390 6 O -0.584 6.584 7 N -0.604 5.604 8 C 0.121 3.879 9 C -0.157 4.157 10 H 0.118 0.882 11 C 0.475 3.525 12 F -0.175 7.175 13 F -0.184 7.184 14 F -0.180 7.180 15 C 0.174 3.826 16 H 0.083 0.917 17 N -0.721 5.721 18 C -0.236 4.236 19 H 0.087 0.913 20 C -0.067 4.067 21 N -0.966 5.966 22 Si 0.966 3.034 23 H -0.258 1.258 24 H -0.297 1.297 25 H -0.301 1.301 26 C 0.066 3.934 27 C 0.046 3.954 28 O -0.178 6.178 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.174 0.826 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.373 0.627 36 H 0.249 0.751 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 0.220 -13.953 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.221 4.221 4 C -0.262 4.262 5 C 0.402 3.598 6 O -0.466 6.466 7 N -0.336 5.336 8 C -0.002 4.002 9 C -0.179 4.179 10 H 0.136 0.864 11 C 0.420 3.580 12 F -0.157 7.157 13 F -0.166 7.166 14 F -0.162 7.162 15 C 0.063 3.937 16 H 0.100 0.900 17 N -0.360 5.360 18 C -0.367 4.367 19 H 0.105 0.895 20 C -0.260 4.260 21 N -0.616 5.616 22 Si 0.796 3.204 23 H -0.182 1.182 24 H -0.225 1.225 25 H -0.229 1.229 26 C -0.059 4.059 27 C -0.024 4.024 28 O -0.073 6.073 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.127 0.873 32 H 0.191 0.809 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.205 0.795 36 H 0.057 0.943 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.276 -0.307 -14.104 14.165 hybrid contribution 0.017 0.299 1.195 1.232 sum -1.259 -0.008 -12.909 12.970 Atomic orbital electron populations 1.20528 0.82066 1.05266 1.05092 1.23012 0.95659 0.83144 1.04450 1.23120 0.90176 1.00821 1.07994 1.21347 0.93859 0.94737 1.16270 1.17056 0.87333 0.79875 0.75529 1.90735 1.31799 1.71767 1.52345 1.48533 1.10294 1.07368 1.67360 1.22213 0.91428 0.90380 0.96191 1.23720 1.01268 0.90020 1.02880 0.86366 1.20011 0.74648 0.89444 0.73916 1.93173 1.80433 1.89926 1.52126 1.93218 1.92205 1.77338 1.53828 1.93187 1.31223 1.97032 1.94738 1.21258 0.89157 0.96726 0.86537 0.89962 1.42539 1.15097 1.59988 1.18377 1.19614 0.91543 1.24928 1.00618 0.89468 1.25489 1.01233 1.00755 0.98532 1.69828 1.35989 1.39448 1.16355 0.85183 0.80240 0.76920 0.78081 1.18194 1.22475 1.22909 1.23921 0.88960 0.94519 0.98492 1.24660 0.84375 0.95181 0.98216 1.83763 1.16481 1.35980 1.71111 0.89274 0.89102 0.87284 0.80935 0.88866 0.87928 0.79474 0.94250 0.88290 0.88272 0.74779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.40 71.24 0.74 -0.50 16 2 C -0.01 -0.37 7.28 24.76 0.18 -0.19 16 3 C -0.20 -5.81 9.18 23.65 0.22 -5.59 16 4 C -0.26 -8.32 6.17 -18.99 -0.12 -8.44 16 5 C 0.61 21.61 7.90 86.65 0.68 22.30 16 6 O -0.58 -23.18 17.24 -4.09 -0.07 -23.25 16 7 N -0.60 -19.17 3.32 -811.87 -2.69 -21.87 16 8 C 0.12 3.34 6.32 86.53 0.55 3.88 16 9 C -0.16 -4.64 2.85 -9.83 -0.03 -4.67 16 10 H 0.12 3.80 7.65 -2.39 -0.02 3.78 16 11 C 0.47 12.94 2.51 71.98 0.18 13.13 16 12 F -0.18 -4.40 16.05 44.97 0.72 -3.68 16 13 F -0.18 -5.84 17.08 44.97 0.77 -5.07 16 14 F -0.18 -4.69 17.11 44.97 0.77 -3.92 16 15 C 0.17 5.88 3.00 45.96 0.14 6.01 16 16 H 0.08 2.71 7.37 -2.39 -0.02 2.69 16 17 N -0.72 -32.28 5.14 -318.35 -1.64 -33.92 16 18 C -0.24 -11.64 9.97 84.03 0.84 -10.80 16 19 H 0.09 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 21 N -0.97 -56.32 13.06 21.65 0.28 -56.04 16 22 Si 0.97 43.11 29.55 68.60 2.03 45.14 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 24 H -0.30 -13.44 7.11 99.48 0.71 -12.74 16 25 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 26 C 0.07 1.97 5.73 86.53 0.50 2.47 16 27 C 0.05 1.30 11.94 67.39 0.80 2.10 16 28 O -0.18 -4.82 10.52 4.49 0.05 -4.78 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.17 4.53 5.55 -2.91 -0.02 4.51 16 33 H 0.09 2.63 7.90 -2.39 -0.02 2.61 16 34 H 0.10 2.37 7.32 -2.39 -0.02 2.36 16 35 H 0.37 18.78 7.51 -92.71 -0.70 18.08 16 36 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 37 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 38 H 0.10 3.29 4.46 -2.39 -0.01 3.28 16 39 H 0.24 5.23 8.06 -2.91 -0.02 5.21 16 Total: -1.00 -65.87 343.66 5.79 -60.08 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.43 Total: 30.73 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 5.15 Total: 16.58 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -4.05 Total: -111.83 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.02 Total: -28.03 kcal Atomic # 9 Polarization: -14.93 SS G_CDS: 2.26 Total: -12.68 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -65.87 5.79 -60.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099243229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.812 kcal (2) G-P(sol) polarization free energy of solvation -65.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds