Wall clock time and date at job start Tue Mar 31 2020 17:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.28681 * 2 1 4 4 C 1.54380 * 110.32429 * 237.76618 * 2 1 3 5 5 N 1.48558 * 104.59619 * 264.95701 * 4 2 1 6 6 C 1.46903 * 110.99904 * 200.95636 * 5 4 2 7 7 C 1.50692 * 109.47471 * 290.12655 * 6 5 4 8 8 C 1.31160 * 120.00053 * 124.99673 * 7 6 5 9 9 Cl 1.73604 * 120.00030 * 180.02562 * 8 7 6 10 10 C 1.48561 * 104.22269 * 320.51698 * 5 4 2 11 11 C 1.54260 * 110.32312 * 122.12869 * 2 1 3 12 12 H 1.08999 * 110.32726 * 359.90326 * 11 2 1 13 13 C 1.52996 * 110.32587 * 237.79068 * 11 2 1 14 14 N 1.46498 * 109.47059 * 175.00002 * 13 11 2 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 11 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46850 * 90.00589 * 23 21 19 25 25 H 1.48498 * 109.47329 * 210.00016 * 23 21 19 26 26 H 1.48499 * 109.47220 * 330.01003 * 23 21 19 27 27 H 1.08995 * 109.47222 * 297.86870 * 1 2 3 28 28 H 1.08998 * 109.47022 * 57.86973 * 1 2 3 29 29 H 1.09004 * 109.47330 * 177.86906 * 1 2 3 30 30 H 1.09000 * 110.40983 * 23.74041 * 4 2 1 31 31 H 1.09001 * 110.41100 * 146.17337 * 4 2 1 32 32 H 1.09003 * 109.46466 * 50.12729 * 6 5 4 33 33 H 1.09000 * 109.46759 * 170.12277 * 6 5 4 34 34 H 1.07999 * 119.99945 * 305.00687 * 7 6 5 35 35 H 1.08001 * 119.99873 * 0.02562 * 8 7 6 36 36 H 1.09003 * 110.40817 * 280.70707 * 10 5 4 37 37 H 1.08995 * 110.41019 * 158.26301 * 10 5 4 38 38 H 1.09004 * 109.47066 * 55.00269 * 13 11 2 39 39 H 1.08994 * 109.46974 * 295.00417 * 13 11 2 40 40 H 0.97001 * 120.00384 * 0.02562 * 14 13 11 41 41 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 42 42 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 43 43 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0662 -0.7722 -1.2246 5 7 2.3148 -2.1474 -0.7206 6 6 3.2649 -2.8609 -1.5844 7 6 2.6104 -3.1654 -2.9071 8 6 3.1761 -2.7746 -4.0241 9 17 2.4218 -3.1249 -5.5479 10 6 2.8807 -1.9416 0.6375 11 6 2.0658 -0.7693 1.2250 12 1 1.2388 -1.1455 1.8273 13 6 2.9675 0.1349 2.0677 14 7 3.3690 -0.5740 3.2853 15 6 4.1747 0.0293 4.1816 16 8 4.5632 1.1608 3.9827 17 6 4.5929 -0.7021 5.4311 18 16 5.6643 0.3655 6.4253 19 6 5.9922 -0.7090 7.7827 20 1 5.5616 -1.6992 7.8039 21 6 6.8049 -0.2832 8.8242 22 7 7.3303 0.9235 8.7981 23 14 7.1521 -1.4220 10.2636 24 1 8.3659 -2.2277 9.9758 25 1 7.3729 -0.6155 11.4908 26 1 5.9936 -2.3282 10.4684 27 1 -0.3633 0.4804 0.9084 28 1 -0.3633 0.5466 -0.8703 29 1 -0.3634 -1.0270 -0.0382 30 1 1.3214 -0.7876 -2.0202 31 1 2.9941 -0.3240 -1.5801 32 1 4.1444 -2.2384 -1.7489 33 1 3.5638 -3.7925 -1.1038 34 1 1.6755 -3.7053 -2.9354 35 1 4.1112 -2.2350 -3.9958 36 1 3.9360 -1.6765 0.5734 37 1 2.7490 -2.8377 1.2439 38 1 2.4240 1.0406 2.3371 39 1 3.8545 0.4009 1.4929 40 1 3.0585 -1.4791 3.4443 41 1 3.7082 -0.9684 6.0095 42 1 5.1344 -1.6079 5.1579 43 1 7.8979 1.2211 9.5261 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101737547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:30 Heat of formation + Delta-G solvation = -34.026018 kcal Electronic energy + Delta-G solvation = -22985.250560 eV Core-core repulsion = 19410.378758 eV Total energy + Delta-G solvation = -3574.871802 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.16636 -38.90792 -37.19619 -35.71806 -34.18219 -32.43994 -32.38120 -30.78221 -28.87559 -27.11563 -26.21856 -25.46458 -23.49495 -21.47918 -20.90108 -20.46990 -19.74784 -17.87264 -16.79643 -16.52538 -16.18076 -15.73022 -15.53550 -15.33778 -14.81476 -14.71214 -14.30505 -13.93115 -13.86710 -13.52660 -13.21699 -13.17009 -13.01125 -12.66325 -12.62684 -12.51962 -11.94733 -11.82148 -11.81203 -11.54737 -11.24370 -11.18117 -11.07487 -11.03737 -10.99760 -10.93014 -10.76152 -9.82746 -9.56950 -9.41731 -9.08273 -8.97827 -8.89847 -8.24972 -6.51366 -6.22836 -3.93491 1.38224 1.85484 3.01749 3.08217 3.21362 3.27054 3.31123 3.57518 3.68745 4.15527 4.19342 4.24372 4.36713 4.49141 4.64253 4.80549 4.90853 4.98046 5.02351 5.08308 5.12334 5.16933 5.21282 5.24925 5.39917 5.46059 5.51421 5.57718 5.66919 5.70268 5.75045 5.79363 5.81529 5.88278 5.90145 6.00816 6.12426 6.38461 6.52672 6.59208 7.58420 7.68381 8.34056 8.59462 9.22508 10.84595 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.001780 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.946487 B =15730.874556 C =16397.307852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.082 0.918 4 C 0.036 3.964 5 N -0.505 5.505 6 C 0.074 3.926 7 C -0.126 4.126 8 C -0.110 4.110 9 Cl -0.095 7.095 10 C 0.035 3.965 11 C -0.100 4.100 12 H 0.091 0.909 13 C 0.129 3.871 14 N -0.739 5.739 15 C 0.531 3.469 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.144 0.856 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.111 -8.399 -24.996 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.100 0.900 4 C -0.092 4.092 5 N -0.229 5.229 6 C -0.054 4.054 7 C -0.145 4.145 8 C -0.155 4.155 9 Cl -0.067 7.067 10 C -0.093 4.093 11 C -0.119 4.119 12 H 0.109 0.891 13 C 0.005 3.995 14 N -0.394 5.394 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.146 0.854 35 H 0.161 0.839 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.888 -6.715 -25.358 29.227 hybrid contribution 0.418 -2.072 1.049 2.360 sum -12.470 -8.788 -24.310 28.700 Atomic orbital electron populations 1.21809 0.93872 1.02347 1.01697 1.21871 0.96793 0.99100 0.93094 0.89998 1.23243 1.00200 0.88197 0.97548 1.65384 1.40088 1.15467 1.01911 1.21276 0.93076 0.99902 0.91140 1.23086 1.00359 0.98368 0.92734 1.24428 1.00508 1.04533 0.86031 1.98376 1.81957 1.93871 1.32447 1.23245 0.97232 0.98758 0.90031 1.22248 0.98196 0.95073 0.96372 0.89101 1.21387 0.97839 0.94967 0.85317 1.46009 1.52556 1.18890 1.21907 1.20316 0.77377 0.86648 0.83930 1.90704 1.53777 1.18257 1.76516 1.23532 1.05080 1.04373 0.97430 1.85401 1.58598 1.19782 1.19646 1.22869 1.35933 1.02587 1.07010 0.90919 1.24996 0.94924 0.95612 0.98059 1.70017 1.30755 1.17002 1.32504 0.86167 0.78742 0.79967 0.80618 1.20282 1.20737 1.19690 0.92466 0.92674 0.91896 0.89806 0.93653 0.93574 0.88844 0.85430 0.83888 0.92966 0.89641 0.91312 0.91762 0.76840 0.89209 0.89267 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.90 37.16 0.33 -0.59 16 2 C -0.09 -0.63 3.30 -89.24 -0.29 -0.93 16 3 H 0.08 0.60 7.71 -51.93 -0.40 0.20 16 4 C 0.04 0.25 5.52 -2.18 -0.01 0.24 16 5 N -0.50 -3.60 5.36 -231.41 -1.24 -4.84 16 6 C 0.07 0.46 5.26 -4.98 -0.03 0.43 16 7 C -0.13 -0.76 8.98 -36.07 -0.32 -1.08 16 8 C -0.11 -0.65 10.43 28.97 0.30 -0.35 16 9 Cl -0.09 -0.67 29.10 -51.86 -1.51 -2.18 16 10 C 0.03 0.26 5.84 -2.18 -0.01 0.25 16 11 C -0.10 -0.77 2.74 -89.24 -0.24 -1.01 16 12 H 0.09 0.69 7.71 -51.93 -0.40 0.29 16 13 C 0.13 1.39 4.79 -4.04 -0.02 1.38 16 14 N -0.74 -9.27 5.43 -60.30 -0.33 -9.59 16 15 C 0.53 9.66 7.85 -10.98 -0.09 9.58 16 16 O -0.52 -11.64 15.86 5.55 0.09 -11.55 16 17 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.07 13.22 55.49 0.73 -25.33 16 23 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.57 7.84 -51.93 -0.41 0.17 16 31 H 0.05 0.32 7.82 -51.93 -0.41 -0.09 16 32 H 0.05 0.28 7.53 -51.93 -0.39 -0.11 16 33 H 0.09 0.54 8.13 -51.93 -0.42 0.11 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.14 0.68 7.84 -52.49 -0.41 0.27 16 36 H 0.05 0.43 7.60 -51.93 -0.39 0.04 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.76 7.98 -51.93 -0.41 0.35 16 40 H 0.40 3.84 8.41 -40.82 -0.34 3.49 16 41 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 42 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 384.93 15.07 5.80 5.80 Total: -1.00 -33.52 384.93 -10.57 -44.09 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.92 Total: -0.99 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 0.03 Total: -7.80 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: -0.83 Total: -39.77 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.51 Total: -2.18 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.52 -10.57 -44.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101737547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.064 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds