Wall clock time and date at job start Tue Mar 31 2020 17:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.28681 * 2 1 4 4 C 1.54380 * 110.32429 * 237.76618 * 2 1 3 5 5 N 1.48558 * 104.59619 * 264.95701 * 4 2 1 6 6 C 1.46903 * 110.99904 * 200.95636 * 5 4 2 7 7 C 1.50692 * 109.47471 * 290.12655 * 6 5 4 8 8 C 1.31160 * 120.00053 * 124.99673 * 7 6 5 9 9 Cl 1.73604 * 120.00030 * 180.02562 * 8 7 6 10 10 C 1.48561 * 104.22269 * 320.51698 * 5 4 2 11 11 C 1.54260 * 110.32312 * 122.12869 * 2 1 3 12 12 H 1.08999 * 110.32726 * 359.90326 * 11 2 1 13 13 C 1.52996 * 110.32587 * 237.79068 * 11 2 1 14 14 N 1.46498 * 109.47059 * 175.00002 * 13 11 2 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 11 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46850 * 90.00589 * 23 21 19 25 25 H 1.48498 * 109.47329 * 210.00016 * 23 21 19 26 26 H 1.48499 * 109.47220 * 330.01003 * 23 21 19 27 27 H 1.08995 * 109.47222 * 297.86870 * 1 2 3 28 28 H 1.08998 * 109.47022 * 57.86973 * 1 2 3 29 29 H 1.09004 * 109.47330 * 177.86906 * 1 2 3 30 30 H 1.09000 * 110.40983 * 23.74041 * 4 2 1 31 31 H 1.09001 * 110.41100 * 146.17337 * 4 2 1 32 32 H 1.09003 * 109.46466 * 50.12729 * 6 5 4 33 33 H 1.09000 * 109.46759 * 170.12277 * 6 5 4 34 34 H 1.07999 * 119.99945 * 305.00687 * 7 6 5 35 35 H 1.08001 * 119.99873 * 0.02562 * 8 7 6 36 36 H 1.09003 * 110.40817 * 280.70707 * 10 5 4 37 37 H 1.08995 * 110.41019 * 158.26301 * 10 5 4 38 38 H 1.09004 * 109.47066 * 55.00269 * 13 11 2 39 39 H 1.08994 * 109.46974 * 295.00417 * 13 11 2 40 40 H 0.97001 * 120.00384 * 0.02562 * 14 13 11 41 41 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 42 42 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 43 43 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0662 -0.7722 -1.2246 5 7 2.3148 -2.1474 -0.7206 6 6 3.2649 -2.8609 -1.5844 7 6 2.6104 -3.1654 -2.9071 8 6 3.1761 -2.7746 -4.0241 9 17 2.4218 -3.1249 -5.5479 10 6 2.8807 -1.9416 0.6375 11 6 2.0658 -0.7693 1.2250 12 1 1.2388 -1.1455 1.8273 13 6 2.9675 0.1349 2.0677 14 7 3.3690 -0.5740 3.2853 15 6 4.1747 0.0293 4.1816 16 8 4.5632 1.1608 3.9827 17 6 4.5929 -0.7021 5.4311 18 16 5.6643 0.3655 6.4253 19 6 5.9922 -0.7090 7.7827 20 1 5.5616 -1.6992 7.8039 21 6 6.8049 -0.2832 8.8242 22 7 7.3303 0.9235 8.7981 23 14 7.1521 -1.4220 10.2636 24 1 8.3659 -2.2277 9.9758 25 1 7.3729 -0.6155 11.4908 26 1 5.9936 -2.3282 10.4684 27 1 -0.3633 0.4804 0.9084 28 1 -0.3633 0.5466 -0.8703 29 1 -0.3634 -1.0270 -0.0382 30 1 1.3214 -0.7876 -2.0202 31 1 2.9941 -0.3240 -1.5801 32 1 4.1444 -2.2384 -1.7489 33 1 3.5638 -3.7925 -1.1038 34 1 1.6755 -3.7053 -2.9354 35 1 4.1112 -2.2350 -3.9958 36 1 3.9360 -1.6765 0.5734 37 1 2.7490 -2.8377 1.2439 38 1 2.4240 1.0406 2.3371 39 1 3.8545 0.4009 1.4929 40 1 3.0585 -1.4791 3.4443 41 1 3.7082 -0.9684 6.0095 42 1 5.1344 -1.6079 5.1579 43 1 7.8979 1.2211 9.5261 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101737547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:29 Heat of formation + Delta-G solvation = -56.772181 kcal Electronic energy + Delta-G solvation = -22986.236907 eV Core-core repulsion = 19410.378758 eV Total energy + Delta-G solvation = -3575.858150 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.00259 -40.09619 -37.72100 -36.48902 -35.15302 -34.57737 -32.92693 -31.89742 -30.06104 -27.71405 -27.62324 -26.90511 -24.22273 -22.22547 -21.75807 -21.22878 -20.55248 -19.76574 -17.85133 -17.49359 -17.17840 -16.87450 -16.67569 -16.36082 -16.20698 -15.74521 -15.58556 -14.86331 -14.71036 -14.55403 -14.40836 -14.12554 -13.95732 -13.62952 -13.43007 -13.19613 -13.15965 -13.05344 -12.88403 -12.62933 -12.41835 -12.38895 -12.22642 -11.84061 -11.76528 -11.69426 -11.60571 -11.55268 -11.13803 -10.92506 -10.26780 -10.12507 -10.05042 -9.51784 -8.66151 -8.34213 -6.12207 0.91263 1.27827 1.36894 1.42882 1.47920 1.58227 1.62301 2.26393 2.30993 3.00003 3.01744 3.32527 3.55068 3.61817 3.77371 3.97404 4.01068 4.13617 4.20701 4.28127 4.34102 4.37750 4.45516 4.52497 4.58654 4.64589 4.67175 4.69333 4.79512 4.91112 4.98256 5.14150 5.20598 5.20792 5.25746 5.31572 5.42292 5.42781 5.48063 5.82158 5.99309 6.20401 6.51444 7.07215 7.25457 8.74968 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.001780 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.946487 B =15730.874556 C =16397.307852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 H 0.079 0.921 4 C 0.038 3.962 5 N -0.508 5.508 6 C 0.075 3.925 7 C -0.124 4.124 8 C -0.110 4.110 9 Cl -0.106 7.106 10 C 0.036 3.964 11 C -0.088 4.088 12 H 0.100 0.900 13 C 0.132 3.868 14 N -0.711 5.711 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.130 4.130 18 S -0.153 6.153 19 C -0.546 4.546 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.258 1.258 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.125 0.875 35 H 0.155 0.845 36 H 0.044 0.956 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.416 0.584 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.195 -10.659 -25.238 30.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 H 0.097 0.903 4 C -0.090 4.090 5 N -0.232 5.232 6 C -0.053 4.053 7 C -0.143 4.143 8 C -0.155 4.155 9 Cl -0.078 7.078 10 C -0.092 4.092 11 C -0.107 4.107 12 H 0.119 0.881 13 C 0.008 3.992 14 N -0.365 5.365 15 C 0.319 3.681 16 O -0.447 6.447 17 C -0.281 4.281 18 S 0.074 5.926 19 C -0.694 4.694 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.181 1.181 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.143 0.857 35 H 0.173 0.827 36 H 0.062 0.938 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.254 0.746 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.013 -9.025 -25.637 30.579 hybrid contribution 0.680 -1.384 0.994 1.835 sum -13.334 -10.409 -24.643 29.890 Atomic orbital electron populations 1.21763 0.93224 1.02312 1.01961 1.21873 0.97261 0.98895 0.92796 0.90311 1.23222 1.00173 0.88124 0.97434 1.65395 1.40375 1.15482 1.01903 1.21290 0.92910 1.00101 0.90994 1.23030 1.00242 0.98336 0.92706 1.24576 1.00863 1.04583 0.85468 1.98376 1.82216 1.93967 1.33232 1.23238 0.96617 0.98848 0.90464 1.22155 0.97711 0.94671 0.96185 0.88146 1.21481 0.97905 0.95337 0.84489 1.45741 1.50228 1.19432 1.21068 1.20068 0.77903 0.85931 0.84192 1.90695 1.56077 1.20345 1.77542 1.23377 1.04272 1.03256 0.97181 1.85588 1.61407 1.23744 1.21896 1.23211 1.36090 1.02858 1.07221 0.89837 1.26130 0.94468 0.97293 1.01289 1.70184 1.31668 1.19259 1.33677 0.84955 0.79100 0.77662 0.76275 1.19328 1.20365 1.18150 0.92581 0.92068 0.92038 0.89567 0.93835 0.93349 0.88219 0.85750 0.82718 0.93787 0.88602 0.92184 0.92735 0.74649 0.87175 0.87120 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.90 71.98 0.64 -0.88 16 2 C -0.09 -1.11 3.30 -9.90 -0.03 -1.14 16 3 H 0.08 1.06 7.71 -2.39 -0.02 1.04 16 4 C 0.04 0.46 5.52 86.45 0.48 0.94 16 5 N -0.51 -6.19 5.36 -886.04 -4.75 -10.94 16 6 C 0.08 0.78 5.26 85.55 0.45 1.23 16 7 C -0.12 -1.29 8.98 25.48 0.23 -1.06 16 8 C -0.11 -1.15 10.43 67.62 0.71 -0.45 16 9 Cl -0.11 -1.40 29.10 -2.72 -0.08 -1.48 16 10 C 0.04 0.45 5.84 86.45 0.50 0.96 16 11 C -0.09 -1.18 2.74 -9.90 -0.03 -1.21 16 12 H 0.10 1.22 7.71 -2.39 -0.02 1.20 16 13 C 0.13 2.68 4.79 86.38 0.41 3.09 16 14 N -0.71 -16.49 5.43 -463.07 -2.51 -19.01 16 15 C 0.53 19.00 7.85 87.66 0.69 19.69 16 16 O -0.57 -25.95 15.86 -3.04 -0.05 -26.00 16 17 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 18 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 19 C -0.55 -30.90 9.50 67.96 0.65 -30.25 16 20 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 21 C 0.01 0.73 5.49 84.86 0.47 1.20 16 22 N -0.91 -55.78 13.22 21.65 0.29 -55.49 16 23 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 1.02 7.84 -2.39 -0.02 1.01 16 31 H 0.04 0.55 7.82 -2.39 -0.02 0.53 16 32 H 0.05 0.49 7.53 -2.39 -0.02 0.48 16 33 H 0.10 0.93 8.13 -2.39 -0.02 0.91 16 34 H 0.12 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.16 1.23 7.84 -2.91 -0.02 1.21 16 36 H 0.04 0.64 7.60 -2.39 -0.02 0.62 16 37 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.05 1.26 7.98 -2.39 -0.02 1.24 16 40 H 0.42 6.75 8.41 -92.71 -0.78 5.97 16 41 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 42 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 43 H 0.27 15.38 8.31 -92.72 -0.77 14.61 16 Total: -1.00 -74.16 384.93 -0.42 -74.58 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.22 Total: 15.15 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 5.60 Total: -12.44 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -6.98 Total: -85.44 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.05 Total: -26.00 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -74.16 -0.42 -74.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101737547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.809 kcal (2) G-P(sol) polarization free energy of solvation -74.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds