Wall clock time and date at job start Tue Mar 31 2020 16:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29022 * 124.91672 * 2 1 4 4 C 1.31785 * 117.12748 * 180.22881 * 3 2 1 5 5 C 1.50696 * 122.74984 * 179.75113 * 4 3 2 6 6 H 1.09002 * 109.54152 * 214.60020 * 5 4 3 7 7 C 1.53101 * 109.50671 * 94.49746 * 5 4 3 8 8 O 1.43007 * 109.25961 * 183.21543 * 7 5 4 9 9 C 1.43110 * 113.76526 * 58.66712 * 8 7 5 10 10 C 1.53100 * 109.20657 * 301.35596 * 9 8 7 11 11 N 1.47014 * 109.50853 * 334.71069 * 5 4 3 12 12 C 1.38820 * 110.99632 * 302.32395 * 11 5 4 13 13 C 1.39971 * 119.96683 * 122.56465 * 12 11 5 14 14 N 1.32124 * 120.32134 * 179.97438 * 13 12 11 15 15 C 1.31931 * 120.26879 * 0.02562 * 14 13 12 16 16 C 1.40682 * 119.93825 * 359.97438 * 15 14 13 17 17 C 1.41271 * 120.16133 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99398 * 7.61516 * 17 16 15 19 19 C 1.40056 * 120.00099 * 187.61861 * 17 16 15 20 20 N 1.30723 * 120.00024 * 7.58443 * 19 17 16 21 21 Si 1.86801 * 119.99722 * 187.58273 * 19 17 16 22 22 H 1.48505 * 109.46670 * 84.99085 * 21 19 17 23 23 H 1.48502 * 109.46717 * 204.98699 * 21 19 17 24 24 H 1.48502 * 109.47300 * 324.98904 * 21 19 17 25 25 N 1.32237 * 119.97840 * 302.28621 * 12 11 5 26 26 C 1.33645 * 114.49626 * 359.48438 * 4 3 2 27 27 S 1.70981 * 124.91793 * 179.69948 * 2 1 3 28 28 H 1.09012 * 109.46966 * 180.32682 * 1 2 3 29 29 H 1.09001 * 109.47174 * 300.32624 * 1 2 3 30 30 H 1.09000 * 109.47457 * 60.33086 * 1 2 3 31 31 H 1.09004 * 109.49998 * 303.15048 * 7 5 4 32 32 H 1.08996 * 109.50809 * 63.27403 * 7 5 4 33 33 H 1.08997 * 109.57012 * 181.41550 * 9 8 7 34 34 H 1.08997 * 109.49420 * 61.25576 * 9 8 7 35 35 H 1.09000 * 109.50623 * 296.87094 * 10 9 8 36 36 H 1.09006 * 109.50534 * 176.78021 * 10 9 8 37 37 H 1.08000 * 119.83771 * 359.96001 * 13 12 11 38 38 H 1.08000 * 120.03123 * 179.97438 * 15 14 13 39 39 H 0.96999 * 120.00341 * 180.02562 * 20 19 17 40 40 H 1.07994 * 126.03552 * 180.26935 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0047 5 6 4.5306 2.0246 -0.0108 6 1 5.4079 1.7509 -0.5969 7 6 4.9544 2.3425 1.4256 8 8 5.8249 3.4771 1.4205 9 6 5.2381 4.6516 0.8512 10 6 4.8171 4.3560 -0.5908 11 7 3.8952 3.2109 -0.6027 12 6 3.4480 2.9455 -1.8898 13 6 2.0981 3.1272 -2.2123 14 7 1.6650 2.8773 -3.4353 15 6 2.5015 2.4536 -4.3634 16 6 3.8606 2.2672 -4.0514 17 6 4.7605 1.8142 -5.0417 18 1 4.4352 1.7278 -6.0680 19 6 6.0743 1.4772 -4.6927 20 7 6.4269 1.4386 -3.4345 21 14 7.3227 1.0827 -6.0251 22 1 7.9294 2.3432 -6.5236 23 1 8.3853 0.2096 -5.4649 24 1 6.6459 0.3819 -7.1458 25 7 4.2986 2.5266 -2.8116 26 6 3.9354 -0.4007 0.0021 27 16 2.4857 -1.4020 0.0074 28 1 -0.3633 -1.0278 0.0059 29 1 -0.3633 0.5189 0.8870 30 1 -0.3634 0.5087 -0.8929 31 1 4.0713 2.5639 2.0250 32 1 5.4769 1.4848 1.8492 33 1 5.9652 5.4635 0.8589 34 1 4.3633 4.9402 1.4339 35 1 5.6990 4.1196 -1.1862 36 1 4.3179 5.2294 -1.0106 37 1 1.4072 3.4731 -1.4578 38 1 2.1433 2.2501 -5.3617 39 1 7.3369 1.2056 -3.1927 40 1 4.9545 -0.7581 0.0040 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165679570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:37 Heat of formation + Delta-G solvation = 63.325990 kcal Electronic energy + Delta-G solvation = -27274.139629 eV Core-core repulsion = 23602.381833 eV Total energy + Delta-G solvation = -3671.757796 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.32114 -38.89600 -38.29964 -35.26456 -34.01335 -32.68990 -31.55038 -30.37220 -29.79887 -27.90817 -26.58753 -25.67090 -24.56971 -22.48133 -22.17193 -21.45532 -20.07201 -19.25699 -17.74386 -17.38259 -16.32238 -15.96992 -15.51557 -15.29537 -15.12393 -14.89565 -14.58436 -14.46665 -14.16403 -14.11742 -13.47277 -13.07221 -12.98645 -12.78778 -12.47321 -12.25660 -11.95850 -11.69818 -11.56418 -11.45760 -11.35141 -11.00828 -10.91515 -10.83658 -10.56128 -10.27010 -9.83137 -9.57370 -9.50563 -9.16416 -9.01272 -8.96660 -8.38612 -8.09949 -7.68980 -7.35447 -6.56945 -4.67550 1.08654 1.71250 2.04551 2.46702 2.89366 2.99230 3.01411 3.16907 3.24218 3.81497 4.02234 4.28847 4.45289 4.60143 5.15795 5.27929 5.40320 5.40931 5.50816 5.56885 5.63628 5.64818 5.68484 5.76366 5.81621 5.93767 5.94924 6.03132 6.07417 6.18946 6.28971 6.45951 6.52389 6.64506 6.85785 6.96324 7.22439 7.31168 7.43873 7.52017 7.86352 8.10579 8.24786 8.45853 8.72464 9.25114 9.79644 10.09863 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.005867 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.428839 B = 4771.462556 C = 5545.250985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.048 3.952 3 N -0.429 5.429 4 C 0.097 3.903 5 C 0.130 3.870 6 H 0.093 0.907 7 C 0.078 3.922 8 O -0.383 6.383 9 C 0.066 3.934 10 C 0.024 3.976 11 N -0.459 5.459 12 C 0.272 3.728 13 C -0.057 4.057 14 N -0.431 5.431 15 C -0.073 4.073 16 C 0.222 3.778 17 C -0.423 4.423 18 H 0.088 0.912 19 C 0.074 3.926 20 N -0.719 5.719 21 Si 0.909 3.091 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.261 1.261 25 N -0.478 5.478 26 C -0.250 4.250 27 S 0.081 5.919 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.275 0.725 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.393 -2.798 8.957 9.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.231 4.231 3 N -0.143 5.143 4 C -0.035 4.035 5 C 0.019 3.981 6 H 0.111 0.889 7 C 0.000 4.000 8 O -0.302 6.302 9 C -0.011 4.011 10 C -0.103 4.103 11 N -0.183 5.183 12 C 0.033 3.967 13 C -0.217 4.217 14 N -0.143 5.143 15 C -0.241 4.241 16 C 0.094 3.906 17 C -0.456 4.456 18 H 0.106 0.894 19 C -0.152 4.152 20 N -0.340 5.340 21 Si 0.733 3.267 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.185 1.185 25 N -0.199 5.199 26 C -0.389 4.389 27 S 0.335 5.665 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.086 0.914 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.894 -3.288 9.492 10.454 hybrid contribution 1.728 0.181 -1.392 2.227 sum -1.166 -3.107 8.100 8.753 Atomic orbital electron populations 1.20350 0.85582 1.02766 1.04406 1.27042 1.01601 0.90442 1.04062 1.66038 1.04078 1.30280 1.13888 1.19864 0.89958 0.93138 1.00573 1.20815 0.93789 0.87127 0.96384 0.88933 1.22634 0.94046 0.88886 0.94462 1.87962 1.40757 1.19673 1.81778 1.22700 0.98142 0.87536 0.92698 1.22734 0.96249 0.94200 0.97168 1.60346 1.36700 1.04201 1.17050 1.20554 0.91907 0.95260 0.88958 1.22201 0.93496 1.12286 0.93767 1.67743 1.37940 1.07568 1.01055 1.23111 0.91897 1.10498 0.98563 1.19161 0.90992 0.90332 0.90135 1.19549 0.94526 1.36358 0.95131 0.89417 1.26031 0.99370 0.93747 0.96072 1.69983 1.18573 1.27960 1.17464 0.86311 0.79786 0.79284 0.81329 1.19179 1.20141 1.18481 1.69303 1.34585 1.14842 1.01156 1.26611 1.02656 0.95680 1.13960 1.83673 0.98695 1.14204 1.69923 0.90899 0.89747 0.89319 0.92378 0.88816 0.88702 0.92495 0.92185 0.90190 0.85185 0.85227 0.91375 0.81044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.47 36.00 0.38 -0.50 16 2 C 0.05 0.78 7.39 -13.46 -0.10 0.68 16 3 N -0.43 -8.22 8.86 -8.06 -0.07 -8.29 16 4 C 0.10 1.85 5.02 -84.22 -0.42 1.43 16 5 C 0.13 2.53 2.15 -68.75 -0.15 2.38 16 6 H 0.09 2.09 7.88 -51.93 -0.41 1.68 16 7 C 0.08 1.26 6.28 37.21 0.23 1.49 16 8 O -0.38 -6.40 10.83 -35.23 -0.38 -6.78 16 9 C 0.07 1.00 7.02 37.21 0.26 1.26 16 10 C 0.02 0.45 5.52 -3.71 -0.02 0.43 16 11 N -0.46 -9.43 4.32 -166.48 -0.72 -10.15 16 12 C 0.27 6.48 4.05 -155.02 -0.63 5.85 16 13 C -0.06 -1.36 10.38 -16.78 -0.17 -1.54 16 14 N -0.43 -10.79 10.47 -12.11 -0.13 -10.91 16 15 C -0.07 -1.84 10.97 -16.59 -0.18 -2.02 16 16 C 0.22 5.93 6.51 -84.83 -0.55 5.38 16 17 C -0.42 -10.89 9.15 -37.75 -0.35 -11.24 16 18 H 0.09 2.11 7.86 -52.49 -0.41 1.69 16 19 C 0.07 1.79 5.47 -17.34 -0.09 1.69 16 20 N -0.72 -18.02 11.60 55.55 0.64 -17.37 16 21 Si 0.91 18.00 29.57 -169.99 -5.03 12.98 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 25 N -0.48 -12.48 7.44 -10.14 -0.08 -12.56 16 26 C -0.25 -4.32 11.14 29.12 0.32 -3.99 16 27 S 0.08 1.21 23.17 -107.50 -2.49 -1.28 16 28 H 0.07 0.72 8.13 -51.92 -0.42 0.30 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.28 8.03 -51.93 -0.42 0.86 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.13 3.01 8.06 -52.49 -0.42 2.58 16 38 H 0.13 3.02 8.06 -52.49 -0.42 2.60 16 39 H 0.28 6.33 8.29 -40.82 -0.34 6.00 16 40 H 0.17 2.69 8.06 -52.49 -0.42 2.26 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -30.03 350.41 -9.46 -39.49 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.02 Total: 8.29 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.47 Total: 1.30 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.35 Total: -59.29 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.38 Total: -6.78 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.98 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.49 Total: -1.28 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.03 -9.46 -39.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165679570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.818 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds