Wall clock time and date at job start Tue Mar 31 2020 16:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29022 * 124.91672 * 2 1 4 4 C 1.31785 * 117.12748 * 180.22881 * 3 2 1 5 5 C 1.50696 * 122.74984 * 179.75113 * 4 3 2 6 6 H 1.09002 * 109.54152 * 214.60020 * 5 4 3 7 7 C 1.53101 * 109.50671 * 94.49746 * 5 4 3 8 8 O 1.43007 * 109.25961 * 183.21543 * 7 5 4 9 9 C 1.43110 * 113.76526 * 58.66712 * 8 7 5 10 10 C 1.53100 * 109.20657 * 301.35596 * 9 8 7 11 11 N 1.47014 * 109.50853 * 334.71069 * 5 4 3 12 12 C 1.38820 * 110.99632 * 302.32395 * 11 5 4 13 13 C 1.39971 * 119.96683 * 122.56465 * 12 11 5 14 14 N 1.32124 * 120.32134 * 179.97438 * 13 12 11 15 15 C 1.31931 * 120.26879 * 0.02562 * 14 13 12 16 16 C 1.40682 * 119.93825 * 359.97438 * 15 14 13 17 17 C 1.41271 * 120.16133 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99398 * 7.61516 * 17 16 15 19 19 C 1.40056 * 120.00099 * 187.61861 * 17 16 15 20 20 N 1.30723 * 120.00024 * 7.58443 * 19 17 16 21 21 Si 1.86801 * 119.99722 * 187.58273 * 19 17 16 22 22 H 1.48505 * 109.46670 * 84.99085 * 21 19 17 23 23 H 1.48502 * 109.46717 * 204.98699 * 21 19 17 24 24 H 1.48502 * 109.47300 * 324.98904 * 21 19 17 25 25 N 1.32237 * 119.97840 * 302.28621 * 12 11 5 26 26 C 1.33645 * 114.49626 * 359.48438 * 4 3 2 27 27 S 1.70981 * 124.91793 * 179.69948 * 2 1 3 28 28 H 1.09012 * 109.46966 * 180.32682 * 1 2 3 29 29 H 1.09001 * 109.47174 * 300.32624 * 1 2 3 30 30 H 1.09000 * 109.47457 * 60.33086 * 1 2 3 31 31 H 1.09004 * 109.49998 * 303.15048 * 7 5 4 32 32 H 1.08996 * 109.50809 * 63.27403 * 7 5 4 33 33 H 1.08997 * 109.57012 * 181.41550 * 9 8 7 34 34 H 1.08997 * 109.49420 * 61.25576 * 9 8 7 35 35 H 1.09000 * 109.50623 * 296.87094 * 10 9 8 36 36 H 1.09006 * 109.50534 * 176.78021 * 10 9 8 37 37 H 1.08000 * 119.83771 * 359.96001 * 13 12 11 38 38 H 1.08000 * 120.03123 * 179.97438 * 15 14 13 39 39 H 0.96999 * 120.00341 * 180.02562 * 20 19 17 40 40 H 1.07994 * 126.03552 * 180.26935 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0047 5 6 4.5306 2.0246 -0.0108 6 1 5.4079 1.7509 -0.5969 7 6 4.9544 2.3425 1.4256 8 8 5.8249 3.4771 1.4205 9 6 5.2381 4.6516 0.8512 10 6 4.8171 4.3560 -0.5908 11 7 3.8952 3.2109 -0.6027 12 6 3.4480 2.9455 -1.8898 13 6 2.0981 3.1272 -2.2123 14 7 1.6650 2.8773 -3.4353 15 6 2.5015 2.4536 -4.3634 16 6 3.8606 2.2672 -4.0514 17 6 4.7605 1.8142 -5.0417 18 1 4.4352 1.7278 -6.0680 19 6 6.0743 1.4772 -4.6927 20 7 6.4269 1.4386 -3.4345 21 14 7.3227 1.0827 -6.0251 22 1 7.9294 2.3432 -6.5236 23 1 8.3853 0.2096 -5.4649 24 1 6.6459 0.3819 -7.1458 25 7 4.2986 2.5266 -2.8116 26 6 3.9354 -0.4007 0.0021 27 16 2.4857 -1.4020 0.0074 28 1 -0.3633 -1.0278 0.0059 29 1 -0.3633 0.5189 0.8870 30 1 -0.3634 0.5087 -0.8929 31 1 4.0713 2.5639 2.0250 32 1 5.4769 1.4848 1.8492 33 1 5.9652 5.4635 0.8589 34 1 4.3633 4.9402 1.4339 35 1 5.6990 4.1196 -1.1862 36 1 4.3179 5.2294 -1.0106 37 1 1.4072 3.4731 -1.4578 38 1 2.1433 2.2501 -5.3617 39 1 7.3369 1.2056 -3.1927 40 1 4.9545 -0.7581 0.0040 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165679570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:36 Heat of formation + Delta-G solvation = 43.006108 kcal Electronic energy + Delta-G solvation = -27275.020765 eV Core-core repulsion = 23602.381833 eV Total energy + Delta-G solvation = -3672.638932 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.84857 -40.53513 -39.76935 -36.82195 -35.90367 -34.02225 -33.42188 -31.74787 -31.47773 -29.23194 -28.25438 -27.42029 -25.90603 -24.32319 -23.49385 -23.25901 -21.54402 -20.60422 -19.57975 -18.90330 -17.85693 -17.35874 -17.18611 -17.04207 -16.78764 -16.52278 -16.00459 -15.82666 -15.60781 -15.45162 -14.91671 -14.69115 -14.58341 -14.22650 -13.83163 -13.48143 -13.35633 -13.33025 -13.05399 -13.01114 -12.94280 -12.70816 -12.40728 -12.26037 -12.11641 -11.69303 -11.66669 -11.47481 -10.91746 -10.86672 -10.46975 -10.28520 -9.92304 -9.61411 -9.54546 -9.21133 -8.42903 -6.63890 -0.21562 0.46836 0.58254 0.74862 1.06954 1.36233 1.48279 1.50219 1.85916 2.14611 2.62504 2.73621 2.85843 3.20943 3.69824 3.83106 3.95952 4.02969 4.10864 4.16409 4.23680 4.27214 4.28161 4.37570 4.47021 4.55510 4.58666 4.65524 4.68769 4.77955 4.82813 4.94995 5.00450 5.05107 5.09153 5.25737 5.32209 5.65571 5.84331 5.97337 6.06675 6.21941 6.55532 6.80667 6.93309 7.30619 7.86658 8.26988 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.005867 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.428839 B = 4771.462556 C = 5545.250985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.034 3.966 3 N -0.463 5.463 4 C 0.075 3.925 5 C 0.136 3.864 6 H 0.054 0.946 7 C 0.087 3.913 8 O -0.391 6.391 9 C 0.074 3.926 10 C 0.026 3.974 11 N -0.456 5.456 12 C 0.278 3.722 13 C -0.063 4.063 14 N -0.435 5.435 15 C -0.094 4.094 16 C 0.192 3.808 17 C -0.447 4.447 18 H 0.097 0.903 19 C 0.032 3.968 20 N -0.745 5.745 21 Si 0.986 3.014 22 H -0.264 1.264 23 H -0.268 1.268 24 H -0.253 1.253 25 N -0.497 5.497 26 C -0.271 4.271 27 S 0.141 5.859 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.074 0.926 35 H 0.026 0.974 36 H 0.081 0.919 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.282 0.718 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.198 -3.563 9.683 10.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.245 4.245 3 N -0.177 5.177 4 C -0.057 4.057 5 C 0.024 3.976 6 H 0.072 0.928 7 C 0.009 3.991 8 O -0.310 6.310 9 C -0.003 4.003 10 C -0.102 4.102 11 N -0.180 5.180 12 C 0.039 3.961 13 C -0.224 4.224 14 N -0.148 5.148 15 C -0.261 4.261 16 C 0.065 3.935 17 C -0.479 4.479 18 H 0.115 0.885 19 C -0.192 4.192 20 N -0.366 5.366 21 Si 0.806 3.194 22 H -0.189 1.189 23 H -0.193 1.193 24 H -0.177 1.177 25 N -0.218 5.218 26 C -0.410 4.410 27 S 0.396 5.604 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.132 0.868 33 H 0.142 0.858 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.100 0.900 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.092 0.908 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.722 -4.060 10.220 11.329 hybrid contribution 1.622 0.379 -1.562 2.283 sum -1.100 -3.681 8.659 9.473 Atomic orbital electron populations 1.20505 0.83091 1.04787 1.04528 1.27739 1.03271 0.90731 1.02729 1.66038 1.04185 1.31911 1.15604 1.19885 0.90304 0.93536 1.01985 1.20739 0.92502 0.86895 0.97445 0.92832 1.22646 0.94525 0.89563 0.92376 1.87956 1.41306 1.20148 1.81568 1.22814 0.99696 0.87710 0.90058 1.22797 0.94460 0.93493 0.99459 1.60438 1.37338 1.05229 1.15044 1.20821 0.91755 0.93732 0.89795 1.22360 0.93929 1.12414 0.93702 1.67720 1.38052 1.07601 1.01406 1.23277 0.91785 1.11712 0.99327 1.19600 0.91900 0.91117 0.90922 1.19936 0.95616 1.36890 0.95473 0.88542 1.26924 1.00767 0.93070 0.98413 1.70075 1.19344 1.27765 1.19407 0.85148 0.76928 0.79093 0.78188 1.18917 1.19261 1.17653 1.69345 1.35405 1.15595 1.01414 1.26879 1.04315 0.96080 1.13750 1.83362 0.96378 1.12199 1.68501 0.87977 0.88048 0.90572 0.91589 0.86839 0.85756 0.90744 0.95560 0.90011 0.84392 0.83961 0.90777 0.80345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.60 10.47 71.24 0.75 -0.85 16 2 C 0.03 1.07 7.39 88.52 0.65 1.73 16 3 N -0.46 -17.62 8.86 -179.40 -1.59 -19.21 16 4 C 0.08 2.90 5.02 41.52 0.21 3.11 16 5 C 0.14 5.35 2.15 44.18 0.09 5.45 16 6 H 0.05 2.53 7.88 -2.39 -0.02 2.51 16 7 C 0.09 2.74 6.28 72.02 0.45 3.19 16 8 O -0.39 -12.59 10.83 -148.98 -1.61 -14.20 16 9 C 0.07 2.13 7.02 72.02 0.51 2.63 16 10 C 0.03 0.97 5.52 86.31 0.48 1.44 16 11 N -0.46 -19.08 4.32 -680.63 -2.94 -22.02 16 12 C 0.28 13.61 4.05 133.38 0.54 14.15 16 13 C -0.06 -3.08 10.38 85.07 0.88 -2.19 16 14 N -0.44 -22.21 10.47 -192.22 -2.01 -24.22 16 15 C -0.09 -4.90 10.97 85.28 0.94 -3.96 16 16 C 0.19 10.58 6.51 40.15 0.26 10.84 16 17 C -0.45 -23.45 9.15 23.46 0.21 -23.24 16 18 H 0.10 4.69 7.86 -2.91 -0.02 4.67 16 19 C 0.03 1.55 5.47 85.30 0.47 2.02 16 20 N -0.74 -38.13 11.60 21.84 0.25 -37.88 16 21 Si 0.99 36.69 29.57 68.60 2.03 38.72 16 22 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 23 H -0.27 -9.53 7.11 99.48 0.71 -8.83 16 24 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 25 N -0.50 -26.81 7.44 -186.00 -1.38 -28.20 16 26 C -0.27 -9.32 11.14 66.78 0.74 -8.58 16 27 S 0.14 4.00 23.17 -56.49 -1.31 2.69 16 28 H 0.10 1.72 8.13 -2.38 -0.02 1.70 16 29 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.03 1.16 8.03 -2.39 -0.02 1.14 16 36 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16 37 H 0.14 6.44 8.06 -2.91 -0.02 6.42 16 38 H 0.14 6.79 8.06 -2.91 -0.02 6.77 16 39 H 0.28 13.16 8.29 -92.71 -0.77 12.39 16 40 H 0.18 5.64 8.06 -2.91 -0.02 5.62 16 Total: -1.00 -66.45 350.41 -0.32 -66.76 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 1.07 Total: 31.82 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 7.18 Total: 5.74 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -7.67 Total: -131.53 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -1.61 Total: -14.20 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.72 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.31 Total: 2.69 kcal Total: -66.45 -0.32 -66.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165679570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.771 kcal (2) G-P(sol) polarization free energy of solvation -66.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds