Wall clock time and date at job start Tue Mar 31 2020 16:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31164 * 1 3 3 Cl 1.73601 * 119.99640 * 2 1 4 4 C 1.50694 * 119.99951 * 180.02562 * 2 1 3 5 5 N 1.46903 * 109.47181 * 114.99946 * 4 2 1 6 6 C 1.46903 * 110.99954 * 179.97438 * 5 4 2 7 7 C 1.53007 * 109.46992 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.49346 * 304.99876 * 7 6 5 9 9 C 1.53036 * 109.49377 * 184.93620 * 7 6 5 10 10 C 1.53041 * 109.53427 * 178.71736 * 9 7 6 11 11 C 1.53192 * 109.34517 * 61.31442 * 10 9 7 12 12 N 1.46928 * 108.77145 * 305.38313 * 11 10 9 13 13 C 1.34779 * 120.62881 * 233.62210 * 12 11 10 14 14 O 1.21277 * 119.99908 * 179.97438 * 13 12 11 15 15 C 1.50697 * 120.00076 * 359.97438 * 13 12 11 16 16 S 1.81002 * 109.47308 * 179.97438 * 15 13 12 17 17 C 1.76203 * 99.99906 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99880 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99846 * 180.02562 * 17 16 15 20 20 N 1.31630 * 119.99912 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00033 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46766 * 90.00436 * 21 19 17 23 23 H 1.48499 * 109.47315 * 210.00282 * 21 19 17 24 24 H 1.48498 * 109.47273 * 330.00530 * 21 19 17 25 25 C 1.46921 * 118.74066 * 53.60803 * 12 11 10 26 26 H 1.07997 * 120.00213 * 179.97438 * 1 2 3 27 27 H 1.07995 * 119.99985 * 359.72815 * 1 2 3 28 28 H 1.08997 * 109.47252 * 234.99781 * 4 2 1 29 29 H 1.09001 * 109.47154 * 355.00126 * 4 2 1 30 30 H 1.00898 * 111.00134 * 303.95516 * 5 4 2 31 31 H 1.08996 * 109.46921 * 299.99734 * 6 5 4 32 32 H 1.08996 * 109.47421 * 60.00240 * 6 5 4 33 33 H 1.08995 * 109.46353 * 298.69847 * 9 7 6 34 34 H 1.08992 * 109.46214 * 58.66479 * 9 7 6 35 35 H 1.09007 * 109.47169 * 301.36149 * 10 9 7 36 36 H 1.08997 * 109.52443 * 181.30010 * 10 9 7 37 37 H 1.08993 * 109.58953 * 185.59302 * 11 10 9 38 38 H 1.08996 * 109.58253 * 65.16585 * 11 10 9 39 39 H 1.09005 * 109.46803 * 299.99472 * 15 13 12 40 40 H 1.09005 * 109.47568 * 59.99136 * 15 13 12 41 41 H 0.97004 * 119.99847 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.58565 * 186.60420 * 25 12 11 43 43 H 1.08998 * 109.58965 * 66.17631 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5035 0.0000 4 6 2.0651 -1.3051 -0.0006 5 7 2.8168 -1.4359 -1.2559 6 6 3.5659 -2.6991 -1.2917 7 6 4.3348 -2.7989 -2.6107 8 1 3.6432 -2.6802 -3.4448 9 6 5.0160 -4.1662 -2.7026 10 6 5.7591 -4.2791 -4.0358 11 6 6.8385 -3.1945 -4.1086 12 7 6.2108 -1.8865 -3.8766 13 6 6.3772 -0.8792 -4.7566 14 8 5.8535 0.1957 -4.5539 15 6 7.2140 -1.0887 -5.9922 16 16 7.2446 0.4368 -6.9660 17 6 8.2621 -0.0781 -8.3092 18 1 8.6534 -1.0844 -8.3354 19 6 8.5615 0.8099 -9.3331 20 7 9.3220 0.4255 -10.3363 21 14 7.8852 2.5506 -9.2873 22 1 8.8428 3.4350 -8.5758 23 1 7.6931 3.0437 -10.6748 24 1 6.5823 2.5569 -8.5749 25 6 5.3981 -1.6974 -2.6674 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0044 28 1 2.7573 -1.3254 0.8412 29 1 1.3602 -2.1316 0.0886 30 1 2.2048 -1.3553 -2.0540 31 1 4.2685 -2.7286 -0.4589 32 1 2.8718 -3.5356 -1.2113 33 1 5.7252 -4.2745 -1.8820 34 1 4.2635 -4.9519 -2.6381 35 1 5.0544 -4.1468 -4.8569 36 1 6.2250 -5.2616 -4.1110 37 1 7.3032 -3.2071 -5.0944 38 1 7.5933 -3.3784 -3.3441 39 1 8.2303 -1.3552 -5.7018 40 1 6.7844 -1.8925 -6.5901 41 1 9.5310 1.0460 -11.0520 42 1 4.9124 -0.7222 -2.7023 43 1 6.0354 -1.7592 -1.7853 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266775336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:48 Heat of formation + Delta-G solvation = -32.637005 kcal Electronic energy + Delta-G solvation = -23635.118155 eV Core-core repulsion = 20060.306585 eV Total energy + Delta-G solvation = -3574.811570 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.03484 -38.06511 -37.21505 -36.10626 -33.93971 -32.49145 -32.40082 -31.25771 -29.34724 -26.67911 -25.63616 -25.02062 -24.22878 -22.03141 -20.89517 -20.17116 -19.04869 -17.62947 -16.96388 -16.68784 -15.88197 -15.43712 -15.30693 -15.12189 -14.89820 -14.77868 -14.53984 -13.92542 -13.91091 -13.55177 -13.22605 -13.04949 -12.85839 -12.75586 -12.49594 -12.38155 -11.97540 -11.94240 -11.90896 -11.27242 -11.22723 -11.05442 -11.00571 -10.97549 -10.81026 -10.63119 -10.51411 -9.82357 -9.53425 -9.35460 -8.97348 -8.82351 -8.47464 -8.44077 -6.87875 -6.26265 -3.97327 1.46568 2.03062 2.78338 3.03458 3.26775 3.36346 3.54021 3.63957 3.74262 4.26544 4.36172 4.48529 4.56271 4.61635 4.77515 4.80493 4.84310 5.02212 5.08343 5.12952 5.16596 5.19695 5.24643 5.31531 5.35210 5.41383 5.51605 5.66257 5.67894 5.72850 5.77540 5.81977 5.85810 5.89660 6.03749 6.14312 6.19506 6.54372 6.68818 6.95541 7.58450 7.96863 8.43987 8.55290 9.20283 10.82952 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.002755 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.777913 B =10159.671320 C =12000.471905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.065 4.065 3 Cl -0.070 7.070 4 C 0.097 3.903 5 N -0.682 5.682 6 C 0.069 3.931 7 C -0.100 4.100 8 H 0.075 0.925 9 C -0.112 4.112 10 C -0.134 4.134 11 C 0.105 3.895 12 N -0.620 5.620 13 C 0.532 3.468 14 O -0.516 6.516 15 C -0.121 4.121 16 S -0.143 6.143 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.235 1.235 25 C 0.127 3.873 26 H 0.119 0.881 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.347 0.653 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.270 0.730 42 H 0.104 0.896 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.364 -11.071 22.898 29.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.092 4.092 3 Cl -0.042 7.042 4 C -0.032 4.032 5 N -0.313 5.313 6 C -0.061 4.061 7 C -0.120 4.120 8 H 0.093 0.907 9 C -0.150 4.150 10 C -0.173 4.173 11 C -0.018 4.018 12 N -0.355 5.355 13 C 0.320 3.680 14 O -0.391 6.391 15 C -0.271 4.271 16 S 0.083 5.917 17 C -0.667 4.667 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C 0.005 3.995 26 H 0.137 0.863 27 H 0.131 0.869 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.165 0.835 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.122 0.878 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.414 -8.932 23.244 29.286 hybrid contribution -0.146 -1.186 -0.629 1.351 sum -15.561 -10.118 22.614 29.256 Atomic orbital electron populations 1.24060 0.93922 1.03702 1.00135 1.23287 0.93554 0.88777 1.03600 1.98409 1.77969 1.31177 1.96599 1.21069 0.96169 0.91494 0.94518 1.60370 1.31209 1.36042 1.03711 1.21968 0.96540 0.89348 0.98207 1.21539 0.97499 0.95602 0.97316 0.90692 1.21523 0.99463 0.96201 0.97844 1.21906 0.98550 0.98798 0.98022 1.21735 0.94981 0.82327 1.02766 1.48103 1.51867 1.12154 1.23422 1.20264 0.80672 0.83508 0.83584 1.90697 1.48069 1.24841 1.75447 1.23310 1.02038 1.04882 0.96913 1.84810 1.68053 1.14593 1.24226 1.22317 1.34726 1.02902 1.06794 0.89446 1.24711 0.93792 0.98804 0.94021 1.69942 1.35478 1.36319 1.10070 0.86735 0.82218 0.84381 0.78539 1.19210 1.19990 1.15881 1.21478 0.91711 1.00338 0.86012 0.86272 0.86853 0.89319 0.93257 0.83460 0.90562 0.94859 0.91638 0.91875 0.91301 0.90621 0.89245 0.91501 0.88690 0.88668 0.91983 0.87810 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 14.05 28.97 0.41 -0.69 16 2 C -0.07 -0.51 6.01 -36.07 -0.22 -0.73 16 3 Cl -0.07 -0.73 28.99 -51.86 -1.50 -2.23 16 4 C 0.10 0.65 6.00 -4.98 -0.03 0.62 16 5 N -0.68 -5.56 6.06 -115.06 -0.70 -6.26 16 6 C 0.07 0.49 5.08 -3.82 -0.02 0.47 16 7 C -0.10 -0.88 2.48 -90.50 -0.22 -1.11 16 8 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 9 C -0.11 -0.82 5.17 -26.69 -0.14 -0.96 16 10 C -0.13 -1.13 6.08 -26.61 -0.16 -1.30 16 11 C 0.11 1.12 6.34 -3.71 -0.02 1.10 16 12 N -0.62 -8.67 2.97 -172.78 -0.51 -9.18 16 13 C 0.53 9.99 7.72 -10.99 -0.08 9.91 16 14 O -0.52 -11.63 15.27 5.56 0.08 -11.55 16 15 C -0.12 -2.42 4.50 36.00 0.16 -2.25 16 16 S -0.14 -3.71 18.55 -107.50 -1.99 -5.71 16 17 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.79 13.97 55.49 0.78 -26.02 16 21 Si 0.86 22.10 27.74 -169.99 -4.71 17.39 16 22 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.23 -6.07 6.74 56.52 0.38 -5.69 16 25 C 0.13 1.54 5.54 -3.71 -0.02 1.52 16 26 H 0.12 0.50 7.84 -52.49 -0.41 0.09 16 27 H 0.11 0.67 8.06 -52.49 -0.42 0.25 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.25 7.80 -51.93 -0.40 -0.15 16 30 H 0.35 2.89 8.72 -39.29 -0.34 2.55 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 1.00 5.93 -51.93 -0.31 0.69 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.78 7.94 -51.91 -0.41 1.37 16 40 H 0.10 1.77 7.69 -51.91 -0.40 1.37 16 41 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.10 1.57 6.79 -51.93 -0.35 1.22 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 377.54 15.07 5.69 5.69 Total: -1.00 -33.98 377.54 -9.87 -43.84 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.86 Total: -0.46 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -0.14 Total: -5.51 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: -0.44 Total: -41.46 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.39 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.71 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.98 -9.87 -43.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266775336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.207 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds