Wall clock time and date at job start Tue Mar 31 2020 17:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.69974 * 2 1 4 4 C 1.52759 * 109.51285 * 239.87974 * 2 1 3 5 5 C 1.53035 * 109.38480 * 185.70561 * 4 2 1 6 6 H 1.09001 * 109.45169 * 301.22777 * 5 4 2 7 7 N 1.46906 * 109.46291 * 181.26118 * 5 4 2 8 8 C 1.46895 * 111.00198 * 154.93184 * 7 5 4 9 9 C 1.50696 * 109.47275 * 180.02562 * 8 7 5 10 10 C 1.31160 * 120.00238 * 124.99920 * 9 8 7 11 11 Cl 1.73600 * 120.00115 * 180.02562 * 10 9 8 12 12 C 1.53048 * 109.53786 * 61.24309 * 5 4 2 13 13 C 1.53191 * 109.31179 * 298.63453 * 12 5 4 14 14 N 1.46926 * 108.77790 * 54.63207 * 13 12 5 15 15 C 1.34771 * 120.63351 * 126.36749 * 14 13 12 16 16 O 1.21282 * 120.00308 * 174.20302 * 15 14 13 17 17 C 1.50698 * 119.99814 * 354.20347 * 15 14 13 18 18 S 1.80997 * 109.47275 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00143 * 179.97438 * 18 17 15 20 20 H 1.07990 * 120.00102 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00051 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00066 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99955 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47612 * 89.99557 * 23 21 19 25 25 H 1.48497 * 109.46773 * 209.99984 * 23 21 19 26 26 H 1.48502 * 109.46956 * 329.99436 * 23 21 19 27 27 H 1.08999 * 109.47069 * 305.45059 * 1 2 3 28 28 H 1.09005 * 109.46733 * 65.44815 * 1 2 3 29 29 H 1.08995 * 109.47023 * 185.44213 * 1 2 3 30 30 H 1.09008 * 109.56099 * 65.67141 * 4 2 1 31 31 H 1.09002 * 109.36014 * 305.62220 * 4 2 1 32 32 H 1.00898 * 110.99462 * 30.97622 * 7 5 4 33 33 H 1.08997 * 109.47425 * 300.00439 * 8 7 5 34 34 H 1.09006 * 109.46942 * 60.00535 * 8 7 5 35 35 H 1.08005 * 120.00084 * 305.00138 * 9 8 7 36 36 H 1.07997 * 119.99905 * 0.02562 * 10 9 8 37 37 H 1.08996 * 109.49987 * 178.68542 * 12 5 4 38 38 H 1.08999 * 109.49439 * 58.58516 * 12 5 4 39 39 H 1.09007 * 109.58481 * 294.84823 * 13 12 5 40 40 H 1.08998 * 109.58919 * 174.42356 * 13 12 5 41 41 H 1.08998 * 109.47258 * 300.00068 * 17 15 14 42 42 H 1.09000 * 109.47153 * 59.99945 * 17 15 14 43 43 H 0.96998 * 120.00023 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0403 -0.7225 -1.2454 5 6 3.5639 -0.8462 -1.1725 6 1 4.0056 0.1476 -1.0994 7 7 4.0593 -1.5140 -2.3836 8 6 5.4549 -1.1445 -2.6551 9 6 5.9270 -1.8466 -3.9021 10 6 6.4264 -1.1523 -4.8965 11 17 6.9696 -1.9611 -6.3333 12 6 3.9523 -1.6687 0.0583 13 6 3.4644 -0.9519 1.3212 14 7 2.0226 -0.6995 1.1946 15 6 1.1673 -1.1069 2.1532 16 8 -0.0048 -0.8017 2.0898 17 6 1.6674 -1.9416 3.3039 18 16 0.2904 -2.3251 4.4143 19 6 1.1350 -3.2801 5.6306 20 1 2.1954 -3.4606 5.5348 21 6 0.4375 -3.7995 6.7125 22 7 1.0683 -4.5133 7.6208 23 14 -1.3966 -3.4867 6.8785 24 1 -2.1475 -4.5687 6.1925 25 1 -1.7664 -3.4625 8.3165 26 1 -1.7341 -2.1802 6.2586 27 1 -0.3633 0.5960 0.8371 28 1 -0.3633 0.4270 -0.9348 29 1 -0.3633 -1.0230 0.0975 30 1 1.7633 -0.1565 -2.1349 31 1 1.5964 -1.7169 -1.2936 32 1 3.4700 -1.3085 -3.1765 33 1 5.5241 -0.0660 -2.7974 34 1 6.0796 -1.4406 -1.8124 35 1 5.8541 -2.9216 -3.9770 36 1 6.4996 -0.0774 -4.8215 37 1 5.0363 -1.7761 0.0968 38 1 3.4905 -2.6541 -0.0022 39 1 3.9929 -0.0049 1.4311 40 1 3.6503 -1.5797 2.1926 41 1 2.0952 -2.8684 2.9216 42 1 2.4306 -1.3873 3.8501 43 1 0.5810 -4.8760 8.3770 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277721135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:34 Heat of formation + Delta-G solvation = -16.016921 kcal Electronic energy + Delta-G solvation = -23655.423333 eV Core-core repulsion = 20081.332464 eV Total energy + Delta-G solvation = -3574.090869 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.48122 -38.27283 -37.19886 -36.03390 -33.68266 -33.20967 -32.43900 -30.72210 -29.04581 -27.42249 -25.60504 -25.32431 -23.93072 -22.15805 -20.96078 -20.52142 -19.07483 -17.61371 -16.99025 -16.55675 -16.07412 -15.79401 -15.50899 -15.08284 -14.97061 -14.88752 -14.30779 -13.91112 -13.60887 -13.53576 -13.29437 -13.11354 -12.78530 -12.69416 -12.49937 -12.33545 -12.17437 -12.00481 -11.73441 -11.65917 -11.26949 -11.26423 -11.14909 -11.01992 -10.99103 -10.75257 -10.57826 -9.85054 -9.61509 -9.00449 -8.94205 -8.82760 -8.55211 -8.48705 -6.91558 -6.28974 -4.00497 1.34103 1.82971 2.70023 2.92843 3.17461 3.33082 3.50106 3.58455 3.70334 4.32261 4.34008 4.37155 4.48769 4.59691 4.65778 4.81458 4.83570 4.95145 5.04987 5.07920 5.09869 5.10186 5.27684 5.29158 5.35009 5.49222 5.55519 5.67986 5.71174 5.74914 5.77419 5.79126 5.84291 5.99620 6.02753 6.22840 6.42154 6.56084 6.74961 6.90156 7.49371 7.94045 8.41515 8.47551 9.17283 10.80238 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.002048 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.774468 B =13669.905056 C =14491.924298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.151 3.849 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.090 3.910 6 H 0.047 0.953 7 N -0.682 5.682 8 C 0.091 3.909 9 C -0.133 4.133 10 C -0.109 4.109 11 Cl -0.094 7.094 12 C -0.123 4.123 13 C 0.107 3.893 14 N -0.616 5.616 15 C 0.535 3.465 16 O -0.511 6.511 17 C -0.124 4.124 18 S -0.143 6.143 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.235 1.235 27 H 0.082 0.918 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.344 0.656 33 H 0.038 0.962 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.144 0.856 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.905 9.902 -24.717 28.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.047 3.953 3 H 0.084 0.916 4 C -0.172 4.172 5 C -0.019 4.019 6 H 0.065 0.935 7 N -0.313 5.313 8 C -0.038 4.038 9 C -0.153 4.153 10 C -0.154 4.154 11 Cl -0.066 7.066 12 C -0.162 4.162 13 C -0.017 4.017 14 N -0.352 5.352 15 C 0.323 3.677 16 O -0.386 6.386 17 C -0.274 4.274 18 S 0.084 5.916 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.163 0.837 33 H 0.056 0.944 34 H 0.109 0.891 35 H 0.147 0.853 36 H 0.161 0.839 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.369 9.609 -24.423 27.867 hybrid contribution 0.861 0.344 -0.096 0.932 sum 10.230 9.953 -24.519 28.371 Atomic orbital electron populations 1.22217 0.92236 1.04255 1.00954 1.21037 0.96161 0.94591 0.83489 0.91600 1.22148 0.94494 1.02537 0.97981 1.21526 0.94729 0.95400 0.90289 0.93531 1.60427 1.02175 1.62295 1.06436 1.20993 0.90831 0.96441 0.95498 1.23198 0.96798 1.01476 0.93805 1.24448 1.03527 0.98718 0.88686 1.98382 1.88821 1.80072 1.39279 1.21945 1.01298 1.00181 0.92805 1.21764 0.80457 1.00502 0.98982 1.48134 1.07164 1.59281 1.20659 1.20246 0.85815 0.79205 0.82458 1.90731 1.17002 1.55186 1.75646 1.23365 1.04398 1.01801 0.97854 1.84757 1.12697 1.69193 1.24988 1.22310 0.98510 1.36934 1.09071 0.89431 1.24716 0.98877 0.93464 0.94274 1.69937 1.36757 1.33251 1.11745 0.86731 0.85016 0.81620 0.78455 1.19230 1.19980 1.15937 0.89881 0.94144 0.91343 0.91000 0.90235 0.83687 0.94433 0.89120 0.85290 0.83874 0.90818 0.90318 0.91534 0.88783 0.88628 0.88717 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 7.60 37.16 0.28 -1.52 16 2 C 0.15 1.66 3.48 -67.82 -0.24 1.42 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.13 -1.14 4.62 -26.84 -0.12 -1.26 16 5 C 0.09 0.67 2.46 -67.67 -0.17 0.51 16 6 H 0.05 0.33 7.80 -51.93 -0.40 -0.08 16 7 N -0.68 -4.62 6.30 -107.95 -0.68 -5.30 16 8 C 0.09 0.50 5.92 -4.98 -0.03 0.47 16 9 C -0.13 -0.76 9.50 -36.07 -0.34 -1.10 16 10 C -0.11 -0.59 10.43 28.97 0.30 -0.29 16 11 Cl -0.09 -0.65 29.10 -51.86 -1.51 -2.16 16 12 C -0.12 -1.06 5.59 -26.61 -0.15 -1.21 16 13 C 0.11 1.07 6.35 -3.71 -0.02 1.05 16 14 N -0.62 -7.96 2.98 -165.47 -0.49 -8.46 16 15 C 0.53 9.30 7.51 -10.99 -0.08 9.21 16 16 O -0.51 -10.33 11.44 5.56 0.06 -10.27 16 17 C -0.12 -2.36 4.51 36.00 0.16 -2.20 16 18 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 19 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 20 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 21 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -26.46 13.97 55.49 0.78 -25.68 16 23 Si 0.86 21.71 27.74 -169.99 -4.72 17.00 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 27 H 0.08 1.27 6.53 -51.93 -0.34 0.93 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 1.04 6.97 -51.93 -0.36 0.68 16 30 H 0.07 0.50 8.10 -51.92 -0.42 0.08 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.34 2.11 8.32 -39.29 -0.33 1.78 16 33 H 0.04 0.18 7.71 -51.93 -0.40 -0.22 16 34 H 0.09 0.51 7.42 -51.93 -0.39 0.13 16 35 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.14 0.56 7.84 -52.49 -0.41 0.15 16 37 H 0.07 0.54 7.43 -51.93 -0.39 0.16 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.99 5.93 -51.93 -0.31 0.68 16 41 H 0.10 1.73 7.93 -51.92 -0.41 1.32 16 42 H 0.09 1.69 7.71 -51.92 -0.40 1.29 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -32.13 369.32 -9.85 -41.98 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.67 Total: -0.28 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -0.19 Total: -6.83 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: -0.40 Total: -39.44 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.06 Total: -10.27 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.72 Total: 17.00 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.51 Total: -2.16 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.13 -9.85 -41.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277721135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.960 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds