Wall clock time and date at job start Tue Mar 31 2020 17:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.69974 * 2 1 4 4 C 1.52759 * 109.51285 * 239.87974 * 2 1 3 5 5 C 1.53035 * 109.38480 * 185.70561 * 4 2 1 6 6 H 1.09001 * 109.45169 * 301.22777 * 5 4 2 7 7 N 1.46906 * 109.46291 * 181.26118 * 5 4 2 8 8 C 1.46895 * 111.00198 * 154.93184 * 7 5 4 9 9 C 1.50696 * 109.47275 * 180.02562 * 8 7 5 10 10 C 1.31160 * 120.00238 * 124.99920 * 9 8 7 11 11 Cl 1.73600 * 120.00115 * 180.02562 * 10 9 8 12 12 C 1.53048 * 109.53786 * 61.24309 * 5 4 2 13 13 C 1.53191 * 109.31179 * 298.63453 * 12 5 4 14 14 N 1.46926 * 108.77790 * 54.63207 * 13 12 5 15 15 C 1.34771 * 120.63351 * 126.36749 * 14 13 12 16 16 O 1.21282 * 120.00308 * 174.20302 * 15 14 13 17 17 C 1.50698 * 119.99814 * 354.20347 * 15 14 13 18 18 S 1.80997 * 109.47275 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00143 * 179.97438 * 18 17 15 20 20 H 1.07990 * 120.00102 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00051 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00066 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99955 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47612 * 89.99557 * 23 21 19 25 25 H 1.48497 * 109.46773 * 209.99984 * 23 21 19 26 26 H 1.48502 * 109.46956 * 329.99436 * 23 21 19 27 27 H 1.08999 * 109.47069 * 305.45059 * 1 2 3 28 28 H 1.09005 * 109.46733 * 65.44815 * 1 2 3 29 29 H 1.08995 * 109.47023 * 185.44213 * 1 2 3 30 30 H 1.09008 * 109.56099 * 65.67141 * 4 2 1 31 31 H 1.09002 * 109.36014 * 305.62220 * 4 2 1 32 32 H 1.00898 * 110.99462 * 30.97622 * 7 5 4 33 33 H 1.08997 * 109.47425 * 300.00439 * 8 7 5 34 34 H 1.09006 * 109.46942 * 60.00535 * 8 7 5 35 35 H 1.08005 * 120.00084 * 305.00138 * 9 8 7 36 36 H 1.07997 * 119.99905 * 0.02562 * 10 9 8 37 37 H 1.08996 * 109.49987 * 178.68542 * 12 5 4 38 38 H 1.08999 * 109.49439 * 58.58516 * 12 5 4 39 39 H 1.09007 * 109.58481 * 294.84823 * 13 12 5 40 40 H 1.08998 * 109.58919 * 174.42356 * 13 12 5 41 41 H 1.08998 * 109.47258 * 300.00068 * 17 15 14 42 42 H 1.09000 * 109.47153 * 59.99945 * 17 15 14 43 43 H 0.96998 * 120.00023 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0403 -0.7225 -1.2454 5 6 3.5639 -0.8462 -1.1725 6 1 4.0056 0.1476 -1.0994 7 7 4.0593 -1.5140 -2.3836 8 6 5.4549 -1.1445 -2.6551 9 6 5.9270 -1.8466 -3.9021 10 6 6.4264 -1.1523 -4.8965 11 17 6.9696 -1.9611 -6.3333 12 6 3.9523 -1.6687 0.0583 13 6 3.4644 -0.9519 1.3212 14 7 2.0226 -0.6995 1.1946 15 6 1.1673 -1.1069 2.1532 16 8 -0.0048 -0.8017 2.0898 17 6 1.6674 -1.9416 3.3039 18 16 0.2904 -2.3251 4.4143 19 6 1.1350 -3.2801 5.6306 20 1 2.1954 -3.4606 5.5348 21 6 0.4375 -3.7995 6.7125 22 7 1.0683 -4.5133 7.6208 23 14 -1.3966 -3.4867 6.8785 24 1 -2.1475 -4.5687 6.1925 25 1 -1.7664 -3.4625 8.3165 26 1 -1.7341 -2.1802 6.2586 27 1 -0.3633 0.5960 0.8371 28 1 -0.3633 0.4270 -0.9348 29 1 -0.3633 -1.0230 0.0975 30 1 1.7633 -0.1565 -2.1349 31 1 1.5964 -1.7169 -1.2936 32 1 3.4700 -1.3085 -3.1765 33 1 5.5241 -0.0660 -2.7974 34 1 6.0796 -1.4406 -1.8124 35 1 5.8541 -2.9216 -3.9770 36 1 6.4996 -0.0774 -4.8215 37 1 5.0363 -1.7761 0.0968 38 1 3.4905 -2.6541 -0.0022 39 1 3.9929 -0.0049 1.4311 40 1 3.6503 -1.5797 2.1926 41 1 2.0952 -2.8684 2.9216 42 1 2.4306 -1.3873 3.8501 43 1 0.5810 -4.8760 8.3770 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277721135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:33 Heat of formation + Delta-G solvation = -36.750337 kcal Electronic energy + Delta-G solvation = -23656.322401 eV Core-core repulsion = 20081.332464 eV Total energy + Delta-G solvation = -3574.989937 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.56327 -39.12912 -37.74211 -36.78524 -34.67495 -34.47873 -34.05234 -31.52961 -30.30362 -28.36431 -27.81912 -25.93784 -24.68925 -23.14377 -21.63701 -21.06983 -20.35582 -19.43606 -17.82897 -17.50613 -17.21321 -17.05361 -16.72412 -16.31740 -15.86159 -15.55916 -15.45249 -15.00733 -14.98517 -14.71337 -14.46664 -14.18688 -13.83553 -13.56317 -13.38781 -13.30731 -13.19321 -13.09417 -12.98676 -12.77934 -12.68634 -12.54653 -12.35064 -12.02376 -11.85928 -11.76029 -11.68515 -11.47840 -11.17123 -10.51334 -10.17912 -10.04639 -9.61834 -9.39638 -8.98931 -8.51504 -6.21966 0.92363 0.98792 1.31181 1.39772 1.46170 1.54100 1.57774 2.08721 2.24913 2.69040 2.86664 3.16249 3.52033 3.75707 3.82479 3.98947 4.04695 4.15639 4.17573 4.20560 4.27232 4.40768 4.45489 4.46778 4.53954 4.58161 4.68973 4.76810 4.81427 4.90090 5.00590 5.02960 5.22552 5.26355 5.34587 5.39530 5.40696 5.70659 5.72628 6.05795 6.11246 6.32052 6.44621 6.93670 7.17229 8.60866 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.002048 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.774468 B =13669.905056 C =14491.924298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.148 3.852 3 H 0.090 0.910 4 C -0.124 4.124 5 C 0.097 3.903 6 H 0.065 0.935 7 N -0.691 5.691 8 C 0.095 3.905 9 C -0.135 4.135 10 C -0.105 4.105 11 Cl -0.111 7.111 12 C -0.118 4.118 13 C 0.100 3.900 14 N -0.605 5.605 15 C 0.533 3.467 16 O -0.547 6.547 17 C -0.109 4.109 18 S -0.174 6.174 19 C -0.529 4.529 20 H 0.061 0.939 21 C 0.045 3.955 22 N -0.916 5.916 23 Si 0.915 3.085 24 H -0.263 1.263 25 H -0.259 1.259 26 H -0.237 1.237 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.350 0.650 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.164 0.836 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.686 11.684 -26.594 31.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.045 3.955 3 H 0.108 0.892 4 C -0.162 4.162 5 C -0.012 4.012 6 H 0.083 0.917 7 N -0.323 5.323 8 C -0.033 4.033 9 C -0.155 4.155 10 C -0.150 4.150 11 Cl -0.083 7.083 12 C -0.157 4.157 13 C -0.022 4.022 14 N -0.339 5.339 15 C 0.321 3.679 16 O -0.425 6.425 17 C -0.260 4.260 18 S 0.053 5.947 19 C -0.676 4.676 20 H 0.079 0.921 21 C -0.160 4.160 22 N -0.554 5.554 23 Si 0.737 3.263 24 H -0.188 1.188 25 H -0.183 1.183 26 H -0.160 1.160 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.169 0.831 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.135 0.865 36 H 0.181 0.819 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.196 11.396 -26.333 30.450 hybrid contribution 0.758 -0.188 0.368 0.863 sum 10.954 11.207 -25.965 30.327 Atomic orbital electron populations 1.22050 0.93857 1.01948 1.01175 1.21258 0.94915 0.95905 0.83394 0.89202 1.22053 0.95262 1.01427 0.97493 1.21411 0.93789 0.95970 0.90043 0.91740 1.60353 1.02955 1.62616 1.06406 1.20982 0.89914 0.97278 0.95151 1.23137 0.97157 1.00996 0.94187 1.24676 1.03059 0.99492 0.87794 1.98383 1.89010 1.80542 1.40316 1.21892 1.02109 0.99010 0.92715 1.22026 0.78639 1.01982 0.99574 1.48160 1.07945 1.57840 1.19989 1.19930 0.85799 0.79334 0.82879 1.90741 1.18441 1.56753 1.76544 1.23342 1.02033 1.02981 0.97603 1.84649 1.15908 1.68583 1.25581 1.22458 0.97652 1.37291 1.10215 0.92074 1.25567 1.03093 0.93301 0.94058 1.70015 1.38591 1.34317 1.12523 0.85861 0.79905 0.81398 0.79160 1.18795 1.18317 1.16042 0.92646 0.91376 0.94358 0.88481 0.92278 0.83084 0.92793 0.89104 0.86462 0.81897 0.89056 0.92549 0.88820 0.89639 0.87803 0.87360 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 7.60 71.98 0.55 -2.77 16 2 C 0.15 2.89 3.48 44.83 0.16 3.04 16 3 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.12 -1.76 4.62 30.53 0.14 -1.62 16 5 C 0.10 1.12 2.46 44.94 0.11 1.23 16 6 H 0.06 0.57 7.80 -2.39 -0.02 0.56 16 7 N -0.69 -7.25 6.30 -495.43 -3.12 -10.37 16 8 C 0.10 0.74 5.92 85.56 0.51 1.24 16 9 C -0.14 -1.24 9.50 25.49 0.24 -1.00 16 10 C -0.11 -0.91 10.43 67.62 0.71 -0.20 16 11 Cl -0.11 -1.39 29.10 -2.72 -0.08 -1.47 16 12 C -0.12 -1.73 5.59 30.67 0.17 -1.56 16 13 C 0.10 1.76 6.35 86.36 0.55 2.31 16 14 N -0.60 -14.64 2.98 -795.81 -2.37 -17.01 16 15 C 0.53 18.38 7.51 87.66 0.66 19.04 16 16 O -0.55 -22.41 11.44 -3.04 -0.03 -22.44 16 17 C -0.11 -4.16 4.51 71.24 0.32 -3.84 16 18 S -0.17 -8.81 18.55 -56.49 -1.05 -9.86 16 19 C -0.53 -30.89 10.04 67.96 0.68 -30.21 16 20 H 0.06 3.77 8.03 -2.92 -0.02 3.74 16 21 C 0.05 2.66 5.50 84.86 0.47 3.13 16 22 N -0.92 -55.91 13.97 21.65 0.30 -55.61 16 23 Si 0.91 45.17 27.74 68.60 1.90 47.08 16 24 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.24 -11.64 6.74 99.48 0.67 -10.97 16 27 H 0.05 1.69 6.53 -2.39 -0.02 1.68 16 28 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.04 1.17 6.97 -2.39 -0.02 1.16 16 30 H 0.10 0.94 8.10 -2.38 -0.02 0.93 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.35 3.17 8.32 -89.70 -0.75 2.42 16 33 H 0.05 0.27 7.71 -2.39 -0.02 0.25 16 34 H 0.09 0.72 7.42 -2.38 -0.02 0.71 16 35 H 0.12 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.16 0.74 7.84 -2.91 -0.02 0.71 16 37 H 0.09 1.05 7.43 -2.39 -0.02 1.03 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.09 1.66 5.93 -2.39 -0.01 1.65 16 41 H 0.10 3.78 7.93 -2.40 -0.02 3.76 16 42 H 0.11 3.83 7.71 -2.40 -0.02 3.81 16 43 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -71.55 369.32 1.04 -70.51 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.22 Total: 10.37 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 5.26 Total: -11.21 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -5.19 Total: -82.98 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.03 Total: -22.44 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.08 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.05 Total: -9.86 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -71.55 1.04 -70.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277721135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.763 kcal (2) G-P(sol) polarization free energy of solvation -71.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds