Wall clock time and date at job start Tue Mar 31 2020 17:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.50096 * 2 1 4 4 C 1.52763 * 109.59008 * 240.04454 * 2 1 3 5 5 N 1.46928 * 109.00872 * 185.53768 * 4 2 1 6 6 C 1.34776 * 120.63242 * 233.58330 * 5 4 2 7 7 O 1.21282 * 119.99940 * 359.72559 * 6 5 4 8 8 C 1.50698 * 120.00035 * 179.71674 * 6 5 4 9 9 S 1.81000 * 109.47349 * 180.02562 * 8 6 5 10 10 C 1.76194 * 100.00068 * 180.02562 * 9 8 6 11 11 H 1.08006 * 120.00457 * 359.97438 * 10 9 8 12 12 C 1.38801 * 120.00163 * 180.02562 * 10 9 8 13 13 N 1.31623 * 120.00373 * 179.97438 * 12 10 9 14 14 Si 1.86808 * 119.99508 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46883 * 90.00251 * 14 12 10 16 16 H 1.48506 * 109.46691 * 209.99932 * 14 12 10 17 17 H 1.48496 * 109.47312 * 329.99980 * 14 12 10 18 18 C 1.46933 * 118.73768 * 53.31156 * 5 4 2 19 19 C 1.53198 * 108.77257 * 306.64474 * 18 5 4 20 20 C 1.53038 * 109.31483 * 54.63593 * 19 18 5 21 21 H 1.09000 * 109.46247 * 58.65265 * 20 19 18 22 22 N 1.46899 * 109.45960 * 178.61371 * 20 19 18 23 23 C 1.46890 * 111.00067 * 274.99682 * 22 20 19 24 24 C 1.50700 * 109.47422 * 180.02562 * 23 22 20 25 25 C 1.31162 * 120.00207 * 124.99867 * 24 23 22 26 26 Cl 1.73595 * 119.99835 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.46697 * 299.93686 * 1 2 3 28 28 H 1.09002 * 109.46452 * 59.93394 * 1 2 3 29 29 H 1.09000 * 109.47518 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.51177 * 65.65785 * 4 2 1 31 31 H 1.08994 * 109.43457 * 305.37320 * 4 2 1 32 32 H 1.09001 * 109.47122 * 60.00223 * 8 6 5 33 33 H 1.09004 * 109.47371 * 300.00514 * 8 6 5 34 34 H 0.97001 * 120.00241 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.58809 * 66.42706 * 18 5 4 36 36 H 1.08994 * 109.58801 * 186.85790 * 18 5 4 37 37 H 1.09003 * 109.49494 * 174.58447 * 19 18 5 38 38 H 1.08998 * 109.49423 * 294.67912 * 19 18 5 39 39 H 1.00903 * 110.99744 * 151.04340 * 22 20 19 40 40 H 1.09004 * 109.47351 * 299.99949 * 23 22 20 41 41 H 1.08999 * 109.47375 * 59.99934 * 23 22 20 42 42 H 1.08001 * 119.99935 * 304.99660 * 24 23 22 43 43 H 1.07997 * 119.99806 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0422 -0.7186 -1.2469 5 7 3.5053 -0.8284 -1.1690 6 6 4.2820 -0.3847 -2.1771 7 8 3.7740 0.1064 -3.1629 8 6 5.7814 -0.4986 -2.0794 9 16 6.5370 0.1797 -3.5778 10 6 8.2399 -0.0753 -3.2042 11 1 8.5248 -0.5329 -2.2683 12 6 9.2153 0.3128 -4.1122 13 7 10.4875 0.1227 -3.8329 14 14 8.7225 1.1049 -5.7306 15 1 8.6488 2.5780 -5.5585 16 1 9.7322 0.7778 -6.7694 17 1 7.3951 0.5885 -6.1506 18 6 4.1060 -1.4257 0.0316 19 6 3.5708 -0.6941 1.2667 20 6 2.0408 -0.7228 1.2486 21 1 1.6971 -1.7571 1.2355 22 7 1.5245 -0.0510 2.4486 23 6 1.4657 -0.9778 3.5867 24 6 0.9319 -0.2548 4.7964 25 6 -0.1132 -0.7258 5.4338 26 17 -0.8811 -2.1824 4.8843 27 1 -0.3632 0.5128 0.8905 28 1 -0.3632 0.5149 -0.8894 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7653 -0.1498 -2.1345 31 1 1.6032 -1.7150 -1.2973 32 1 6.0601 -1.5471 -1.9742 33 1 6.1325 0.0595 -1.2113 34 1 11.1691 0.3936 -4.4676 35 1 3.8386 -2.4809 0.0877 36 1 5.1902 -1.3231 -0.0125 37 1 3.9333 -1.1885 2.1679 38 1 3.9155 0.3399 1.2547 39 1 0.6210 0.3618 2.2714 40 1 0.8075 -1.8117 3.3425 41 1 2.4658 -1.3548 3.8003 42 1 1.4100 0.6512 5.1385 43 1 -0.4954 -0.2078 6.3009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319675388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:44 Heat of formation + Delta-G solvation = -27.131539 kcal Electronic energy + Delta-G solvation = -23753.082859 eV Core-core repulsion = 20178.510024 eV Total energy + Delta-G solvation = -3574.572835 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.29005 -38.41778 -37.33166 -35.81869 -34.09339 -32.70933 -32.43187 -30.68371 -29.62823 -26.74698 -25.98800 -25.55047 -23.67924 -22.32410 -20.75806 -20.21065 -19.14260 -17.65594 -17.22100 -16.78829 -15.91128 -15.77155 -15.43820 -15.04718 -15.00909 -14.94204 -14.14434 -13.98483 -13.76469 -13.45814 -13.36886 -13.06351 -12.83465 -12.77958 -12.52823 -12.35555 -12.22504 -12.18615 -11.98108 -11.43322 -11.31540 -11.25077 -11.17892 -11.00135 -10.86420 -10.61674 -10.52760 -9.85007 -9.62359 -9.45548 -8.99685 -8.77717 -8.60243 -8.47849 -6.91034 -6.28190 -3.99760 1.35234 1.85743 2.71582 2.93940 3.19850 3.33985 3.51349 3.59583 3.76142 4.29015 4.33449 4.35198 4.54273 4.59195 4.69912 4.74312 4.93925 5.02932 5.08759 5.10882 5.12638 5.16944 5.19185 5.28740 5.40287 5.43763 5.52272 5.55766 5.64820 5.69214 5.70748 5.76839 5.79849 5.90617 5.95956 6.00263 6.12084 6.56107 6.65372 7.00027 7.47221 7.94812 8.42141 8.44885 9.18094 10.80984 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.027700 B = 0.002157 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.598096 B =12980.799267 C =13610.267919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 H 0.085 0.915 4 C 0.121 3.879 5 N -0.618 5.618 6 C 0.534 3.466 7 O -0.520 6.520 8 C -0.121 4.121 9 S -0.143 6.143 10 C -0.520 4.520 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.107 3.893 19 C -0.123 4.123 20 C 0.095 3.905 21 H 0.047 0.953 22 N -0.682 5.682 23 C 0.071 3.929 24 C -0.133 4.133 25 C -0.112 4.112 26 Cl -0.095 7.095 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.271 0.729 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.344 0.656 40 H 0.050 0.950 41 H 0.087 0.913 42 H 0.141 0.859 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.113 -3.558 19.125 30.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.128 4.128 3 H 0.104 0.896 4 C -0.002 4.002 5 N -0.354 5.354 6 C 0.322 3.678 7 O -0.395 6.395 8 C -0.272 4.272 9 S 0.083 5.917 10 C -0.668 4.668 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.159 1.159 18 C -0.017 4.017 19 C -0.162 4.162 20 C -0.014 4.014 21 H 0.065 0.935 22 N -0.316 5.316 23 C -0.057 4.057 24 C -0.152 4.152 25 C -0.157 4.157 26 Cl -0.067 7.067 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.165 0.835 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.159 0.841 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -23.119 -2.684 17.725 29.255 hybrid contribution -0.036 -0.825 0.475 0.952 sum -23.154 -3.509 18.200 29.659 Atomic orbital electron populations 1.21828 0.94590 1.02030 1.02315 1.21598 0.95692 1.01248 0.94278 0.89636 1.21447 0.79888 1.00394 0.98492 1.48064 1.06169 1.62442 1.18676 1.20298 0.88794 0.76662 0.82009 1.90684 1.75042 1.43237 1.30493 1.23308 0.93304 1.05472 1.05081 1.84791 1.04831 1.80821 1.21252 1.22307 0.88395 1.47324 1.08761 0.89394 1.24713 0.94046 0.94346 0.98227 1.69935 0.99452 1.45778 1.36529 0.86736 0.80784 0.80928 0.83409 1.19211 1.19964 1.15929 1.21776 0.99365 0.96752 0.83844 1.21939 0.94503 1.02395 0.97362 1.21520 0.95323 0.95968 0.88623 0.93494 1.60490 1.32540 1.33919 1.04613 1.21264 1.01636 0.93838 0.89001 1.23226 0.95321 1.00164 0.96469 1.24594 0.97607 0.91085 1.02374 1.98363 1.81293 1.37684 1.89392 0.92300 0.91645 0.92538 0.88623 0.91908 0.88538 0.88507 0.91955 0.91513 0.88833 0.90772 0.90394 0.83539 0.93176 0.89524 0.84109 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.94 37.16 0.33 -0.73 16 2 C -0.11 -0.98 2.54 -90.72 -0.23 -1.21 16 3 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.12 1.38 5.69 -3.93 -0.02 1.36 16 5 N -0.62 -8.33 2.98 -173.02 -0.52 -8.85 16 6 C 0.53 9.72 7.72 -10.99 -0.08 9.63 16 7 O -0.52 -11.32 15.28 5.56 0.08 -11.23 16 8 C -0.12 -2.37 4.50 36.00 0.16 -2.21 16 9 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 10 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 11 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 12 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 13 N -0.88 -26.56 13.97 55.49 0.78 -25.79 16 14 Si 0.86 21.86 27.74 -169.99 -4.71 17.14 16 15 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 17 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 18 C 0.11 1.12 6.34 -3.70 -0.02 1.09 16 19 C -0.12 -1.12 5.59 -26.61 -0.15 -1.27 16 20 C 0.10 0.79 1.95 -67.67 -0.13 0.65 16 21 H 0.05 0.39 7.80 -51.93 -0.40 -0.02 16 22 N -0.68 -5.08 6.30 -107.95 -0.68 -5.76 16 23 C 0.07 0.47 5.78 -4.98 -0.03 0.44 16 24 C -0.13 -0.73 9.78 -36.07 -0.35 -1.08 16 25 C -0.11 -0.58 10.82 28.97 0.31 -0.27 16 26 Cl -0.10 -0.64 26.96 -51.86 -1.40 -2.04 16 27 H 0.06 0.36 6.16 -51.93 -0.32 0.04 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 1.27 7.01 -51.93 -0.36 0.91 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 1.76 7.94 -51.92 -0.41 1.35 16 33 H 0.10 1.77 7.69 -51.91 -0.40 1.37 16 34 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 37 H 0.07 0.59 7.43 -51.93 -0.39 0.20 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.34 2.40 6.08 -39.29 -0.24 2.16 16 40 H 0.05 0.35 5.92 -51.93 -0.31 0.05 16 41 H 0.09 0.59 7.41 -51.93 -0.39 0.21 16 42 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.15 0.49 8.06 -52.49 -0.42 0.06 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -33.07 368.59 -9.37 -42.44 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.48 Total: -0.25 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 0.00 Total: -5.56 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: -0.42 Total: -40.40 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.40 Total: -2.04 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.07 -9.37 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319675388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.309 kcal (2) G-P(sol) polarization free energy of solvation -33.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds