Wall clock time and date at job start Tue Mar 31 2020 17:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.50096 * 2 1 4 4 C 1.52763 * 109.59008 * 240.04454 * 2 1 3 5 5 N 1.46928 * 109.00872 * 185.53768 * 4 2 1 6 6 C 1.34776 * 120.63242 * 233.58330 * 5 4 2 7 7 O 1.21282 * 119.99940 * 359.72559 * 6 5 4 8 8 C 1.50698 * 120.00035 * 179.71674 * 6 5 4 9 9 S 1.81000 * 109.47349 * 180.02562 * 8 6 5 10 10 C 1.76194 * 100.00068 * 180.02562 * 9 8 6 11 11 H 1.08006 * 120.00457 * 359.97438 * 10 9 8 12 12 C 1.38801 * 120.00163 * 180.02562 * 10 9 8 13 13 N 1.31623 * 120.00373 * 179.97438 * 12 10 9 14 14 Si 1.86808 * 119.99508 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46883 * 90.00251 * 14 12 10 16 16 H 1.48506 * 109.46691 * 209.99932 * 14 12 10 17 17 H 1.48496 * 109.47312 * 329.99980 * 14 12 10 18 18 C 1.46933 * 118.73768 * 53.31156 * 5 4 2 19 19 C 1.53198 * 108.77257 * 306.64474 * 18 5 4 20 20 C 1.53038 * 109.31483 * 54.63593 * 19 18 5 21 21 H 1.09000 * 109.46247 * 58.65265 * 20 19 18 22 22 N 1.46899 * 109.45960 * 178.61371 * 20 19 18 23 23 C 1.46890 * 111.00067 * 274.99682 * 22 20 19 24 24 C 1.50700 * 109.47422 * 180.02562 * 23 22 20 25 25 C 1.31162 * 120.00207 * 124.99867 * 24 23 22 26 26 Cl 1.73595 * 119.99835 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.46697 * 299.93686 * 1 2 3 28 28 H 1.09002 * 109.46452 * 59.93394 * 1 2 3 29 29 H 1.09000 * 109.47518 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.51177 * 65.65785 * 4 2 1 31 31 H 1.08994 * 109.43457 * 305.37320 * 4 2 1 32 32 H 1.09001 * 109.47122 * 60.00223 * 8 6 5 33 33 H 1.09004 * 109.47371 * 300.00514 * 8 6 5 34 34 H 0.97001 * 120.00241 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.58809 * 66.42706 * 18 5 4 36 36 H 1.08994 * 109.58801 * 186.85790 * 18 5 4 37 37 H 1.09003 * 109.49494 * 174.58447 * 19 18 5 38 38 H 1.08998 * 109.49423 * 294.67912 * 19 18 5 39 39 H 1.00903 * 110.99744 * 151.04340 * 22 20 19 40 40 H 1.09004 * 109.47351 * 299.99949 * 23 22 20 41 41 H 1.08999 * 109.47375 * 59.99934 * 23 22 20 42 42 H 1.08001 * 119.99935 * 304.99660 * 24 23 22 43 43 H 1.07997 * 119.99806 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0422 -0.7186 -1.2469 5 7 3.5053 -0.8284 -1.1690 6 6 4.2820 -0.3847 -2.1771 7 8 3.7740 0.1064 -3.1629 8 6 5.7814 -0.4986 -2.0794 9 16 6.5370 0.1797 -3.5778 10 6 8.2399 -0.0753 -3.2042 11 1 8.5248 -0.5329 -2.2683 12 6 9.2153 0.3128 -4.1122 13 7 10.4875 0.1227 -3.8329 14 14 8.7225 1.1049 -5.7306 15 1 8.6488 2.5780 -5.5585 16 1 9.7322 0.7778 -6.7694 17 1 7.3951 0.5885 -6.1506 18 6 4.1060 -1.4257 0.0316 19 6 3.5708 -0.6941 1.2667 20 6 2.0408 -0.7228 1.2486 21 1 1.6971 -1.7571 1.2355 22 7 1.5245 -0.0510 2.4486 23 6 1.4657 -0.9778 3.5867 24 6 0.9319 -0.2548 4.7964 25 6 -0.1132 -0.7258 5.4338 26 17 -0.8811 -2.1824 4.8843 27 1 -0.3632 0.5128 0.8905 28 1 -0.3632 0.5149 -0.8894 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7653 -0.1498 -2.1345 31 1 1.6032 -1.7150 -1.2973 32 1 6.0601 -1.5471 -1.9742 33 1 6.1325 0.0595 -1.2113 34 1 11.1691 0.3936 -4.4676 35 1 3.8386 -2.4809 0.0877 36 1 5.1902 -1.3231 -0.0125 37 1 3.9333 -1.1885 2.1679 38 1 3.9155 0.3399 1.2547 39 1 0.6210 0.3618 2.2714 40 1 0.8075 -1.8117 3.3425 41 1 2.4658 -1.3548 3.8003 42 1 1.4100 0.6512 5.1385 43 1 -0.4954 -0.2078 6.3009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319675388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:44 Heat of formation + Delta-G solvation = -48.597312 kcal Electronic energy + Delta-G solvation = -23754.013685 eV Core-core repulsion = 20178.510024 eV Total energy + Delta-G solvation = -3575.503661 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.37627 -39.42644 -37.88057 -36.61783 -34.89910 -34.67084 -33.38819 -31.59911 -30.91049 -27.92249 -27.47558 -26.65804 -24.54701 -23.09487 -21.51468 -20.91455 -20.31389 -19.50186 -18.26158 -17.64324 -17.17725 -16.92627 -16.72633 -16.46125 -15.82263 -15.62381 -15.58879 -15.11416 -14.90472 -14.76042 -14.43199 -14.06989 -13.96883 -13.54758 -13.39383 -13.35414 -13.12989 -13.03886 -13.00758 -12.94036 -12.80988 -12.56653 -12.14110 -11.99218 -11.90413 -11.86311 -11.48620 -11.29961 -11.17309 -10.91702 -10.52149 -10.05937 -9.72849 -9.35403 -9.00572 -8.51540 -6.22533 0.95206 0.97086 1.31157 1.44685 1.45759 1.50631 1.54125 2.05745 2.24956 2.67965 2.86561 3.15686 3.47713 3.72783 3.73449 3.89470 3.95445 4.15355 4.18286 4.25338 4.31750 4.36719 4.41652 4.49826 4.59121 4.66122 4.72368 4.74054 4.80741 4.83897 4.91064 5.01087 5.17221 5.23537 5.27322 5.32235 5.39111 5.52977 5.70846 6.05320 6.11311 6.23615 6.44693 6.93598 7.07026 8.60730 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.027700 B = 0.002157 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.598096 B =12980.799267 C =13610.267919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 H 0.066 0.934 4 C 0.118 3.882 5 N -0.605 5.605 6 C 0.534 3.466 7 O -0.564 6.564 8 C -0.106 4.106 9 S -0.177 6.177 10 C -0.527 4.527 11 H 0.063 0.937 12 C 0.046 3.954 13 N -0.916 5.916 14 Si 0.914 3.086 15 H -0.263 1.263 16 H -0.258 1.258 17 H -0.238 1.238 18 C 0.100 3.900 19 C -0.117 4.117 20 C 0.101 3.899 21 H 0.056 0.944 22 N -0.685 5.685 23 C 0.072 3.928 24 C -0.137 4.137 25 C -0.108 4.108 26 Cl -0.111 7.111 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.277 0.723 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.347 0.653 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.151 0.849 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.902 -3.956 20.470 32.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 H 0.084 0.916 4 C -0.005 4.005 5 N -0.338 5.338 6 C 0.322 3.678 7 O -0.443 6.443 8 C -0.256 4.256 9 S 0.049 5.951 10 C -0.675 4.675 11 H 0.081 0.919 12 C -0.160 4.160 13 N -0.554 5.554 14 Si 0.736 3.264 15 H -0.187 1.187 16 H -0.183 1.183 17 H -0.162 1.162 18 C -0.023 4.023 19 C -0.156 4.156 20 C -0.009 4.009 21 H 0.074 0.926 22 N -0.319 5.319 23 C -0.056 4.056 24 C -0.156 4.156 25 C -0.153 4.153 26 Cl -0.083 7.083 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.169 0.831 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.168 0.832 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -24.925 -3.103 19.125 31.569 hybrid contribution 0.452 -0.762 0.244 0.919 sum -24.473 -3.865 19.369 31.448 Atomic orbital electron populations 1.21793 0.92776 1.02832 1.02847 1.21481 0.97081 0.99802 0.93566 0.91595 1.21639 0.78350 1.01575 0.98899 1.48084 1.06959 1.60617 1.18154 1.20014 0.88266 0.76950 0.82602 1.90667 1.75435 1.45700 1.32461 1.23275 0.94323 1.06006 1.02033 1.84718 1.03010 1.81795 1.25529 1.22436 0.90452 1.46743 1.07847 0.91880 1.25554 0.94081 0.94903 1.01451 1.70009 1.00448 1.46904 1.38000 0.85877 0.80602 0.80089 0.79860 1.18720 1.18266 1.16163 1.22051 0.99154 0.98108 0.82960 1.21880 0.95230 1.01278 0.97209 1.21421 0.94612 0.96315 0.88532 0.92590 1.60458 1.32861 1.34096 1.04443 1.21259 1.01600 0.93708 0.89061 1.23249 0.95575 1.00546 0.96217 1.24877 0.97293 0.90337 1.02786 1.98364 1.81561 1.38742 1.89612 0.91045 0.91912 0.91559 0.90770 0.89784 0.87010 0.87226 0.91357 0.89028 0.89264 0.89025 0.92150 0.83109 0.93422 0.89665 0.83186 0.81380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.94 71.98 0.64 -1.09 16 2 C -0.10 -1.64 2.54 -10.86 -0.03 -1.67 16 3 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.12 2.53 5.69 86.22 0.49 3.02 16 5 N -0.60 -15.54 2.98 -819.72 -2.44 -17.98 16 6 C 0.53 19.22 7.72 87.66 0.68 19.89 16 7 O -0.56 -24.78 15.28 -3.04 -0.05 -24.83 16 8 C -0.11 -4.09 4.50 71.24 0.32 -3.77 16 9 S -0.18 -9.09 18.55 -56.49 -1.05 -10.14 16 10 C -0.53 -30.84 10.04 67.95 0.68 -30.16 16 11 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 12 C 0.05 2.69 5.50 84.86 0.47 3.15 16 13 N -0.92 -55.84 13.97 21.65 0.30 -55.54 16 14 Si 0.91 45.31 27.74 68.60 1.90 47.21 16 15 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 16 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 18 C 0.10 1.88 6.34 86.36 0.55 2.42 16 19 C -0.12 -1.88 5.59 30.67 0.17 -1.71 16 20 C 0.10 1.42 1.95 44.94 0.09 1.51 16 21 H 0.06 0.73 7.80 -2.39 -0.02 0.71 16 22 N -0.68 -8.60 6.30 -495.45 -3.12 -11.72 16 23 C 0.07 0.78 5.78 85.56 0.49 1.28 16 24 C -0.14 -1.17 9.78 25.49 0.25 -0.93 16 25 C -0.11 -0.87 10.82 67.62 0.73 -0.14 16 26 Cl -0.11 -1.29 26.96 -2.72 -0.07 -1.36 16 27 H 0.07 0.70 6.16 -2.39 -0.01 0.68 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 1.96 7.01 -2.39 -0.02 1.94 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.11 3.98 7.94 -2.39 -0.02 3.96 16 33 H 0.11 3.96 7.69 -2.39 -0.02 3.94 16 34 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.78 5.93 -2.39 -0.01 1.77 16 37 H 0.09 1.20 7.43 -2.39 -0.02 1.18 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.35 3.99 6.08 -89.69 -0.55 3.44 16 40 H 0.05 0.56 5.92 -2.39 -0.01 0.54 16 41 H 0.09 0.95 7.41 -2.39 -0.02 0.93 16 42 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 43 H 0.17 0.65 8.06 -2.91 -0.02 0.62 16 Total: -1.00 -72.17 368.59 1.44 -70.73 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.43 Total: 11.82 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 5.54 Total: -8.20 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -5.26 Total: -85.23 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.05 Total: -24.83 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.05 Total: -10.14 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.07 Total: -1.36 kcal Total: -72.17 1.44 -70.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319675388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.129 kcal (2) G-P(sol) polarization free energy of solvation -72.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds