Wall clock time and date at job start Tue Mar 31 2020 16:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30864 * 125.88926 * 2 1 4 4 C 1.33689 * 109.77101 * 180.02562 * 3 2 1 5 5 S 1.76198 * 125.61915 * 179.97438 * 4 3 2 6 6 C 1.81404 * 103.00234 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47273 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47110 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00342 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00183 * 179.97438 * 8 7 6 11 11 C 1.39933 * 120.00086 * 174.89338 * 10 8 7 12 12 C 1.39293 * 119.94461 * 145.78786 * 11 10 8 13 13 C 1.38491 * 120.42607 * 179.97438 * 12 11 10 14 14 C 1.37691 * 120.32075 * 359.97438 * 13 12 11 15 15 C 1.40736 * 119.88464 * 0.02562 * 14 13 12 16 16 C 1.41411 * 120.20717 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99736 * 205.17060 * 16 15 14 18 18 C 1.39929 * 119.99981 * 25.16771 * 16 15 14 19 19 N 1.30827 * 120.00250 * 16.81026 * 18 16 15 20 20 Si 1.86803 * 119.99895 * 196.80268 * 18 16 15 21 21 H 1.48494 * 109.47040 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46835 * 119.99995 * 20 18 16 23 23 H 1.48497 * 109.47291 * 240.00383 * 20 18 16 24 24 C 1.38243 * 119.94691 * 325.51141 * 11 10 8 25 25 N 1.31258 * 108.76605 * 0.23296 * 4 3 2 26 26 N 1.34349 * 125.88204 * 180.02562 * 2 1 3 27 27 H 0.97000 * 126.76600 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.47366 * 89.97389 * 1 2 3 29 29 H 1.09001 * 109.47234 * 209.97580 * 1 2 3 30 30 H 1.09000 * 109.47135 * 329.97712 * 1 2 3 31 31 H 1.09008 * 109.46815 * 300.00444 * 6 5 4 32 32 H 1.08996 * 109.46800 * 59.99988 * 6 5 4 33 33 H 1.09007 * 109.46750 * 300.00033 * 7 6 5 34 34 H 1.08997 * 109.47086 * 59.99816 * 7 6 5 35 35 H 0.97004 * 119.99854 * 354.89925 * 10 8 7 36 36 H 1.07998 * 119.79030 * 359.97425 * 12 11 10 37 37 H 1.07993 * 119.83913 * 179.97438 * 13 12 11 38 38 H 1.07994 * 120.05257 * 179.97438 * 14 13 12 39 39 H 0.97000 * 120.00359 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.15895 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0602 0.0000 4 6 3.5585 0.6890 -0.0006 5 16 4.9420 1.7802 -0.0014 6 6 6.3570 0.6451 -0.0027 7 6 7.6574 1.4512 -0.0029 8 6 8.8329 0.5082 -0.0033 9 8 8.6487 -0.6906 -0.0039 10 7 10.0890 0.9969 -0.0041 11 6 11.1788 0.1258 0.1034 12 6 12.3671 0.4132 -0.5641 13 6 13.4521 -0.4417 -0.4643 14 6 13.3677 -1.5859 0.2971 15 6 12.1735 -1.8892 0.9771 16 6 12.0792 -3.0628 1.7604 17 1 11.1152 -3.5146 1.9423 18 6 13.2348 -3.6386 2.2999 19 7 14.3409 -2.9434 2.3694 20 14 13.1981 -5.3999 2.9210 21 1 11.8376 -5.9637 2.7305 22 1 14.1813 -6.2132 2.1612 23 1 13.5464 -5.4232 4.3643 24 6 11.0762 -1.0157 0.8764 25 7 3.6191 -0.6221 -0.0060 26 7 2.2944 -1.0885 -0.0005 27 1 2.0052 -2.0144 -0.0006 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 6.3195 0.0167 0.8872 32 1 6.3182 0.0172 -0.8928 33 1 7.6950 2.0798 -0.8926 34 1 7.6959 2.0788 0.8873 35 1 10.2375 1.9526 -0.0791 36 1 12.4429 1.3085 -1.1633 37 1 14.3687 -0.2098 -0.9861 38 1 14.2163 -2.2497 0.3716 39 1 15.1419 -3.3424 2.7437 40 1 10.1568 -1.2369 1.3981 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362452621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:44 Heat of formation + Delta-G solvation = 61.287772 kcal Electronic energy + Delta-G solvation = -23871.820139 eV Core-core repulsion = 20199.973959 eV Total energy + Delta-G solvation = -3671.846180 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.35455 -39.75308 -37.24401 -34.49599 -33.31925 -33.16144 -32.88978 -32.62473 -29.81896 -28.65009 -28.21598 -25.34190 -24.76582 -23.39975 -21.57185 -21.18891 -20.77377 -19.55042 -18.44217 -17.71489 -17.09163 -16.55544 -16.22270 -15.76255 -15.53956 -15.07666 -14.80939 -14.59401 -14.26032 -13.86396 -13.51927 -13.47264 -13.13006 -12.98398 -12.78922 -12.52728 -12.23188 -12.10901 -11.67957 -11.60710 -11.17358 -11.11638 -10.92880 -10.91378 -10.86205 -10.45003 -10.30412 -10.17067 -10.07868 -9.66592 -9.42559 -9.07704 -8.97696 -7.93874 -7.44766 -6.92232 -6.70950 -4.33125 0.87838 1.17119 1.84737 2.40498 2.53361 2.57113 2.82854 3.10054 3.16832 3.19346 3.35173 3.65784 3.85104 3.97350 4.35326 4.54496 4.64972 4.83114 4.87207 4.94668 5.05042 5.22425 5.36977 5.53936 5.55503 5.72978 5.83132 5.85857 6.25055 6.39489 6.65773 6.75293 7.02088 7.04873 7.07450 7.25919 7.55545 7.56675 7.72780 7.97461 8.09870 8.17082 8.25586 8.61867 8.72647 8.94626 8.99057 10.22209 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.002228 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.212561 B =12562.711835 C =14189.906422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.290 3.710 3 N -0.519 5.519 4 C 0.212 3.788 5 S 0.021 5.979 6 C -0.096 4.096 7 C -0.125 4.125 8 C 0.510 3.490 9 O -0.514 6.514 10 N -0.667 5.667 11 C 0.150 3.850 12 C -0.261 4.261 13 C -0.093 4.093 14 C -0.171 4.171 15 C 0.119 3.881 16 C -0.457 4.457 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.795 5.795 20 Si 0.907 3.093 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.275 1.275 24 C -0.209 4.209 25 N -0.309 5.309 26 N -0.478 5.478 27 H 0.442 0.558 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.400 0.600 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.279 0.721 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.227 7.764 -3.895 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.009 3.991 3 N -0.250 5.250 4 C -0.178 4.178 5 S 0.248 5.752 6 C -0.246 4.246 7 C -0.167 4.167 8 C 0.294 3.706 9 O -0.389 6.389 10 N -0.311 5.311 11 C 0.059 3.941 12 C -0.282 4.282 13 C -0.112 4.112 14 C -0.191 4.191 15 C 0.116 3.884 16 C -0.487 4.487 17 H 0.096 0.904 18 C -0.142 4.142 19 N -0.421 5.421 20 Si 0.732 3.268 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.200 1.200 24 C -0.231 4.231 25 N -0.142 5.142 26 N -0.197 5.197 27 H 0.288 0.712 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.234 0.766 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.608 8.013 -3.788 22.433 hybrid contribution -0.231 -2.291 0.286 2.320 sum -20.839 5.722 -3.501 21.892 Atomic orbital electron populations 1.20425 0.83231 1.05226 1.04768 1.24499 0.96718 0.82638 0.95213 1.70557 0.99480 1.29044 1.25931 1.25978 0.97344 0.92952 1.01571 1.85347 0.90866 1.06442 1.92516 1.23384 0.92573 1.00028 1.08599 1.21330 0.91156 0.98538 1.05692 1.20258 0.83819 0.89377 0.77102 1.90782 1.85066 1.15666 1.47337 1.43422 1.05002 1.10027 1.72623 1.17429 0.86021 0.92510 0.98173 1.20047 0.94759 1.03561 1.09843 1.20468 0.96131 0.95426 0.99136 1.21348 0.99813 0.98108 0.99805 1.17502 0.90426 0.91138 0.89382 1.19607 0.94080 1.07694 1.27318 0.90360 1.25902 0.94840 0.99303 0.94157 1.69832 1.01799 1.36468 1.33985 0.86273 0.79638 0.82287 0.78613 1.18388 1.19709 1.20022 1.20965 1.00645 0.96307 1.05175 1.78526 0.96919 1.10410 1.28383 1.47891 1.04158 1.10130 1.57533 0.71232 0.88765 0.89651 0.88134 0.87907 0.87996 0.87853 0.87680 0.76649 0.89245 0.89031 0.86323 0.90999 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.51 36.01 0.38 0.10 16 2 C 0.29 2.62 8.23 -155.74 -1.28 1.34 16 3 N -0.52 -6.60 11.21 -10.96 -0.12 -6.72 16 4 C 0.21 2.91 8.28 -90.96 -0.75 2.15 16 5 S 0.02 0.24 22.16 -107.50 -2.38 -2.14 16 6 C -0.10 -1.23 4.85 37.16 0.18 -1.05 16 7 C -0.13 -1.43 5.71 -27.89 -0.16 -1.58 16 8 C 0.51 8.66 7.56 -10.99 -0.08 8.57 16 9 O -0.51 -11.21 13.74 5.56 0.08 -11.14 16 10 N -0.67 -11.48 5.34 -9.91 -0.05 -11.54 16 11 C 0.15 3.39 6.25 -83.76 -0.52 2.86 16 12 C -0.26 -5.73 9.97 -39.10 -0.39 -6.12 16 13 C -0.09 -2.17 10.02 -39.69 -0.40 -2.57 16 14 C -0.17 -4.52 8.69 -38.84 -0.34 -4.86 16 15 C 0.12 3.29 5.57 -106.85 -0.59 2.69 16 16 C -0.46 -12.67 9.05 -37.74 -0.34 -13.01 16 17 H 0.08 2.15 7.90 -52.49 -0.41 1.73 16 18 C 0.08 1.94 5.16 -17.35 -0.09 1.85 16 19 N -0.80 -20.84 10.94 55.55 0.61 -20.24 16 20 Si 0.91 19.27 29.59 -169.99 -5.03 14.24 16 21 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 C -0.21 -5.45 8.39 -38.68 -0.32 -5.77 16 25 N -0.31 -4.25 12.36 30.13 0.37 -3.88 16 26 N -0.48 -4.54 7.43 32.61 0.24 -4.30 16 27 H 0.44 2.51 8.96 -182.34 -1.63 0.87 16 28 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 1.47 8.10 -51.92 -0.42 1.05 16 32 H 0.10 1.43 8.10 -51.93 -0.42 1.01 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.40 5.16 8.82 -40.82 -0.36 4.80 16 36 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.12 3.22 6.17 -52.49 -0.32 2.89 16 39 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 40 H 0.11 2.81 6.49 -52.49 -0.34 2.47 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -35.49 361.97 -11.56 -47.05 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.01 Total: 8.58 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -4.72 Total: -15.38 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 1.05 Total: -46.67 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -2.38 Total: -2.14 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.49 -11.56 -47.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362452621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.336 kcal (2) G-P(sol) polarization free energy of solvation -35.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds