Wall clock time and date at job start Tue Mar 31 2020 16:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30864 * 125.88926 * 2 1 4 4 C 1.33689 * 109.77101 * 180.02562 * 3 2 1 5 5 S 1.76198 * 125.61915 * 179.97438 * 4 3 2 6 6 C 1.81404 * 103.00234 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47273 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47110 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00342 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00183 * 179.97438 * 8 7 6 11 11 C 1.39933 * 120.00086 * 174.89338 * 10 8 7 12 12 C 1.39293 * 119.94461 * 145.78786 * 11 10 8 13 13 C 1.38491 * 120.42607 * 179.97438 * 12 11 10 14 14 C 1.37691 * 120.32075 * 359.97438 * 13 12 11 15 15 C 1.40736 * 119.88464 * 0.02562 * 14 13 12 16 16 C 1.41411 * 120.20717 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99736 * 205.17060 * 16 15 14 18 18 C 1.39929 * 119.99981 * 25.16771 * 16 15 14 19 19 N 1.30827 * 120.00250 * 16.81026 * 18 16 15 20 20 Si 1.86803 * 119.99895 * 196.80268 * 18 16 15 21 21 H 1.48494 * 109.47040 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46835 * 119.99995 * 20 18 16 23 23 H 1.48497 * 109.47291 * 240.00383 * 20 18 16 24 24 C 1.38243 * 119.94691 * 325.51141 * 11 10 8 25 25 N 1.31258 * 108.76605 * 0.23296 * 4 3 2 26 26 N 1.34349 * 125.88204 * 180.02562 * 2 1 3 27 27 H 0.97000 * 126.76600 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.47366 * 89.97389 * 1 2 3 29 29 H 1.09001 * 109.47234 * 209.97580 * 1 2 3 30 30 H 1.09000 * 109.47135 * 329.97712 * 1 2 3 31 31 H 1.09008 * 109.46815 * 300.00444 * 6 5 4 32 32 H 1.08996 * 109.46800 * 59.99988 * 6 5 4 33 33 H 1.09007 * 109.46750 * 300.00033 * 7 6 5 34 34 H 1.08997 * 109.47086 * 59.99816 * 7 6 5 35 35 H 0.97004 * 119.99854 * 354.89925 * 10 8 7 36 36 H 1.07998 * 119.79030 * 359.97425 * 12 11 10 37 37 H 1.07993 * 119.83913 * 179.97438 * 13 12 11 38 38 H 1.07994 * 120.05257 * 179.97438 * 14 13 12 39 39 H 0.97000 * 120.00359 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.15895 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0602 0.0000 4 6 3.5585 0.6890 -0.0006 5 16 4.9420 1.7802 -0.0014 6 6 6.3570 0.6451 -0.0027 7 6 7.6574 1.4512 -0.0029 8 6 8.8329 0.5082 -0.0033 9 8 8.6487 -0.6906 -0.0039 10 7 10.0890 0.9969 -0.0041 11 6 11.1788 0.1258 0.1034 12 6 12.3671 0.4132 -0.5641 13 6 13.4521 -0.4417 -0.4643 14 6 13.3677 -1.5859 0.2971 15 6 12.1735 -1.8892 0.9771 16 6 12.0792 -3.0628 1.7604 17 1 11.1152 -3.5146 1.9423 18 6 13.2348 -3.6386 2.2999 19 7 14.3409 -2.9434 2.3694 20 14 13.1981 -5.3999 2.9210 21 1 11.8376 -5.9637 2.7305 22 1 14.1813 -6.2132 2.1612 23 1 13.5464 -5.4232 4.3643 24 6 11.0762 -1.0157 0.8764 25 7 3.6191 -0.6221 -0.0060 26 7 2.2944 -1.0885 -0.0005 27 1 2.0052 -2.0144 -0.0006 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 6.3195 0.0167 0.8872 32 1 6.3182 0.0172 -0.8928 33 1 7.6950 2.0798 -0.8926 34 1 7.6959 2.0788 0.8873 35 1 10.2375 1.9526 -0.0791 36 1 12.4429 1.3085 -1.1633 37 1 14.3687 -0.2098 -0.9861 38 1 14.2163 -2.2497 0.3716 39 1 15.1419 -3.3424 2.7437 40 1 10.1568 -1.2369 1.3981 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362452621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:44 Heat of formation + Delta-G solvation = 37.606522 kcal Electronic energy + Delta-G solvation = -23872.847035 eV Core-core repulsion = 20199.973959 eV Total energy + Delta-G solvation = -3672.873076 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.17541 -41.26849 -39.04530 -36.24454 -34.85580 -34.13397 -33.97817 -33.47042 -31.76144 -30.05583 -29.13423 -27.28948 -26.00534 -24.32283 -23.08376 -22.64346 -22.08443 -21.06962 -19.55142 -19.20244 -18.38803 -17.60611 -17.36215 -17.10310 -16.89461 -16.71786 -16.43641 -15.83492 -15.33233 -15.27050 -14.77566 -14.70212 -14.25944 -13.91570 -13.85031 -13.82343 -13.55481 -13.42464 -13.04256 -12.92330 -12.87272 -12.80392 -12.54605 -12.19540 -11.98605 -11.82204 -11.76358 -11.53327 -11.22969 -11.17746 -10.91573 -10.89564 -10.67049 -9.40562 -8.85440 -8.76376 -8.61866 -6.38513 -0.05263 0.35843 0.84909 0.91264 0.98777 1.33940 1.44846 1.49377 1.54996 1.78892 1.83119 2.19000 2.30418 2.71969 3.25523 3.48725 3.70846 3.73903 3.82555 3.93089 4.44201 4.47178 4.52911 4.61591 4.63883 4.66908 4.75884 4.81472 4.99965 5.04804 5.09175 5.09271 5.11958 5.23999 5.32302 5.75357 5.85743 6.06223 6.07369 6.10268 6.33658 6.63844 6.67697 6.74862 6.92479 7.00095 7.33134 8.31697 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.002228 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.212561 B =12562.711835 C =14189.906422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.300 3.700 3 N -0.553 5.553 4 C 0.189 3.811 5 S 0.054 5.946 6 C -0.095 4.095 7 C -0.108 4.108 8 C 0.507 3.493 9 O -0.569 6.569 10 N -0.655 5.655 11 C 0.158 3.842 12 C -0.249 4.249 13 C -0.092 4.092 14 C -0.198 4.198 15 C 0.086 3.914 16 C -0.502 4.502 17 H 0.060 0.940 18 C 0.037 3.963 19 N -0.821 5.821 20 Si 0.981 3.019 21 H -0.267 1.267 22 H -0.258 1.258 23 H -0.261 1.261 24 C -0.237 4.237 25 N -0.351 5.351 26 N -0.472 5.472 27 H 0.456 0.544 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.143 0.857 34 H 0.137 0.863 35 H 0.425 0.575 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.289 0.711 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.425 9.538 -4.657 24.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.021 3.979 3 N -0.285 5.285 4 C -0.201 4.201 5 S 0.282 5.718 6 C -0.245 4.245 7 C -0.149 4.149 8 C 0.294 3.706 9 O -0.447 6.447 10 N -0.302 5.302 11 C 0.064 3.936 12 C -0.270 4.270 13 C -0.111 4.111 14 C -0.218 4.218 15 C 0.083 3.917 16 C -0.532 4.532 17 H 0.078 0.922 18 C -0.178 4.178 19 N -0.448 5.448 20 Si 0.801 3.199 21 H -0.191 1.191 22 H -0.182 1.182 23 H -0.185 1.185 24 C -0.259 4.259 25 N -0.185 5.185 26 N -0.193 5.193 27 H 0.305 0.695 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.161 0.839 34 H 0.155 0.845 35 H 0.264 0.736 36 H 0.153 0.847 37 H 0.141 0.859 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.826 9.835 -4.559 24.370 hybrid contribution -0.022 -2.731 0.447 2.768 sum -21.848 7.103 -4.111 23.339 Atomic orbital electron populations 1.20728 0.79188 1.06926 1.06462 1.25477 0.98498 0.81538 0.92434 1.70560 0.99354 1.30801 1.27765 1.26333 0.98408 0.93342 1.02023 1.85009 0.89474 1.04946 1.92382 1.23240 0.94283 1.00348 1.06586 1.21329 0.87335 0.97229 1.09029 1.21256 0.84784 0.89471 0.75072 1.90777 1.85821 1.18608 1.49465 1.43324 1.03920 1.10730 1.72187 1.17512 0.87845 0.91893 0.96320 1.20510 0.93507 1.04291 1.08651 1.20857 0.97939 0.94267 0.98001 1.21301 0.99043 0.99716 1.01696 1.17854 0.91713 0.91876 0.90218 1.19732 0.94348 1.09352 1.29771 0.92175 1.26687 0.93937 1.03328 0.93811 1.69856 1.02429 1.38156 1.34310 0.85195 0.79360 0.76619 0.78715 1.19137 1.18231 1.18522 1.20935 0.99578 0.98256 1.07128 1.78418 0.99514 1.10836 1.29775 1.47839 1.03003 1.11243 1.57189 0.69459 0.86826 0.86713 0.87605 0.90321 0.89832 0.83927 0.84533 0.73622 0.84721 0.85863 0.87863 0.89986 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.51 71.24 0.75 0.42 16 2 C 0.30 5.05 8.23 138.24 1.14 6.19 16 3 N -0.55 -13.70 11.21 -188.58 -2.11 -15.82 16 4 C 0.19 5.20 8.28 180.47 1.49 6.69 16 5 S 0.05 1.24 22.16 -56.49 -1.25 -0.02 16 6 C -0.09 -2.41 4.85 71.98 0.35 -2.06 16 7 C -0.11 -2.23 5.71 29.85 0.17 -2.06 16 8 C 0.51 16.90 7.56 87.65 0.66 17.57 16 9 O -0.57 -25.86 13.74 -3.03 -0.04 -25.90 16 10 N -0.66 -21.37 5.34 -303.65 -1.62 -22.99 16 11 C 0.16 7.02 6.25 38.10 0.24 7.26 16 12 C -0.25 -10.32 9.97 22.58 0.23 -10.10 16 13 C -0.09 -4.20 10.02 22.20 0.22 -3.98 16 14 C -0.20 -10.75 8.69 22.75 0.20 -10.56 16 15 C 0.09 5.03 5.57 -21.31 -0.12 4.91 16 16 C -0.50 -29.68 9.05 23.46 0.21 -29.47 16 17 H 0.06 3.60 7.90 -2.91 -0.02 3.58 16 18 C 0.04 1.99 5.16 85.25 0.44 2.43 16 19 N -0.82 -44.37 10.94 21.82 0.24 -44.13 16 20 Si 0.98 40.77 29.59 68.60 2.03 42.80 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 22 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 24 C -0.24 -12.92 8.39 22.85 0.19 -12.72 16 25 N -0.35 -9.86 12.36 -58.58 -0.72 -10.58 16 26 N -0.47 -8.73 7.43 -50.73 -0.38 -9.11 16 27 H 0.46 4.84 8.96 -213.10 -1.91 2.93 16 28 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.08 2.37 8.10 -2.39 -0.02 2.35 16 32 H 0.08 2.42 8.10 -2.39 -0.02 2.40 16 33 H 0.14 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.43 9.39 8.82 -92.71 -0.82 8.57 16 36 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 37 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 38 H 0.10 5.83 6.17 -2.91 -0.02 5.81 16 39 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 40 H 0.08 4.78 6.49 -2.91 -0.02 4.76 16 Total: -1.00 -84.28 361.97 0.69 -83.59 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -1.62 Total: 27.63 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 6.17 Total: -25.49 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -4.60 Total: -102.63 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.04 Total: -25.90 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -1.25 Total: -0.02 kcal Total: -84.28 0.69 -83.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362452621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.201 kcal (2) G-P(sol) polarization free energy of solvation -84.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds