Wall clock time and date at job start Tue Mar 31 2020 17:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.45244 * 2 1 4 4 C 1.53042 * 109.45971 * 240.02939 * 2 1 3 5 5 C 1.53118 * 109.27557 * 180.80434 * 4 2 1 6 6 H 1.08996 * 109.57643 * 297.71849 * 5 4 2 7 7 N 1.46504 * 109.52330 * 177.56051 * 5 4 2 8 8 C 1.34774 * 120.00256 * 155.32135 * 7 5 4 9 9 O 1.21278 * 119.99847 * 359.97438 * 8 7 5 10 10 C 1.50703 * 119.99968 * 180.02562 * 8 7 5 11 11 S 1.80999 * 109.46918 * 179.97438 * 10 8 7 12 12 C 1.76205 * 99.99886 * 179.97438 * 11 10 8 13 13 H 1.07993 * 119.99653 * 0.02562 * 12 11 10 14 14 C 1.38796 * 119.99724 * 180.02562 * 12 11 10 15 15 N 1.31633 * 120.00134 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99786 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47147 * 179.97438 * 16 14 12 18 18 H 1.48502 * 109.47023 * 299.99757 * 16 14 12 19 19 H 1.48496 * 109.47194 * 59.99949 * 16 14 12 20 20 C 1.53119 * 109.15884 * 57.65584 * 5 4 2 21 21 C 1.53035 * 109.28143 * 302.34286 * 20 5 4 22 22 N 1.46840 * 109.46288 * 119.98085 * 2 1 3 23 23 C 1.46906 * 110.99665 * 305.85342 * 22 2 1 24 24 C 1.50695 * 109.47153 * 169.94533 * 23 22 2 25 25 C 1.31158 * 120.00560 * 124.99745 * 24 23 22 26 26 Cl 1.73608 * 119.99716 * 359.97438 * 25 24 23 27 27 H 1.08994 * 109.47186 * 306.99057 * 1 2 3 28 28 H 1.09007 * 109.47200 * 66.98847 * 1 2 3 29 29 H 1.09001 * 109.47347 * 186.98295 * 1 2 3 30 30 H 1.08994 * 109.50363 * 60.86797 * 4 2 1 31 31 H 1.08997 * 109.50557 * 300.74647 * 4 2 1 32 32 H 0.97000 * 119.99576 * 335.31418 * 7 5 4 33 33 H 1.08999 * 109.47163 * 59.99803 * 10 8 7 34 34 H 1.08997 * 109.46986 * 299.99734 * 10 8 7 35 35 H 0.96993 * 120.00095 * 0.02562 * 15 14 12 36 36 H 1.09002 * 109.50363 * 62.28968 * 20 5 4 37 37 H 1.09007 * 109.50442 * 182.40429 * 20 5 4 38 38 H 1.08992 * 109.46628 * 179.19979 * 21 20 5 39 39 H 1.09002 * 109.45760 * 299.16661 * 21 20 5 40 40 H 1.09009 * 109.47140 * 289.93885 * 23 22 2 41 41 H 1.08996 * 109.47219 * 49.93933 * 23 22 2 42 42 H 1.08006 * 119.99886 * 304.99745 * 24 23 22 43 43 H 1.07997 * 120.00590 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5709 -0.7360 -1.2357 6 1 3.9465 0.2867 -1.2678 7 7 4.0641 -1.4755 -2.4002 8 6 5.2961 -1.2244 -2.8857 9 8 5.9962 -0.3859 -2.3588 10 6 5.8032 -1.9847 -4.0840 11 16 7.4755 -1.4244 -4.4905 12 6 7.8110 -2.4487 -5.8845 13 1 7.0676 -3.1522 -6.2289 14 6 9.0308 -2.3514 -6.5396 15 7 9.9367 -1.4935 -6.1199 16 14 9.3862 -3.4368 -8.0178 17 1 10.7470 -3.1410 -8.5333 18 1 9.3086 -4.8638 -7.6141 19 1 8.3853 -3.1681 -9.0813 20 6 4.0547 -1.4188 0.0466 21 6 3.4864 -0.6778 1.2590 22 7 2.0193 -0.6918 1.1992 23 6 1.4372 -0.1107 2.4165 24 6 1.7607 -0.9897 3.5970 25 6 2.3610 -0.4828 4.6472 26 17 2.7838 1.2007 4.6770 27 1 -0.3633 0.6183 0.8208 28 1 -0.3634 0.4018 -0.9459 29 1 -0.3634 -1.0200 0.1249 30 1 1.6895 -0.1981 -2.1399 31 1 1.6658 -1.7446 -1.2578 32 1 3.5040 -2.1459 -2.8218 33 1 5.1439 -1.8059 -4.9334 34 1 5.8220 -3.0506 -3.8567 35 1 9.7520 -0.9297 -5.3526 36 1 3.7124 -2.4537 0.0592 37 1 5.1439 -1.3948 0.0831 38 1 3.8174 -1.1700 2.1734 39 1 3.8403 0.3531 1.2531 40 1 1.8532 0.8837 2.5792 41 1 0.3556 -0.0380 2.3031 42 1 1.4980 -2.0372 3.5783 43 1 2.5924 -1.1127 5.4934 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674115560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:17 Heat of formation + Delta-G solvation = -34.987086 kcal Electronic energy + Delta-G solvation = -23611.738041 eV Core-core repulsion = 20036.824564 eV Total energy + Delta-G solvation = -3574.913477 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.20922 -38.85312 -37.19217 -35.52081 -33.85155 -32.56501 -32.52365 -31.33899 -29.05670 -27.38710 -26.07647 -24.82323 -23.23396 -21.87974 -20.40001 -20.25858 -19.89870 -18.32216 -16.85295 -16.60237 -16.35383 -15.97045 -15.30098 -15.12106 -14.96741 -14.46678 -14.20899 -13.85430 -13.83107 -13.69997 -13.28170 -12.93103 -12.59773 -12.41038 -12.38619 -12.31854 -12.15914 -12.06699 -11.91588 -11.86369 -11.38840 -11.26565 -11.00917 -10.92949 -10.90529 -10.68180 -10.17324 -9.57770 -9.51999 -9.44325 -9.02201 -8.91531 -8.63008 -8.21963 -6.66697 -6.61932 -3.99687 1.42878 1.94734 2.92303 3.00911 3.34925 3.38015 3.51392 3.56183 3.61122 4.25370 4.31702 4.45602 4.57293 4.61438 4.82041 4.92424 4.98236 5.01315 5.10332 5.19141 5.22671 5.26116 5.28392 5.32186 5.43403 5.48399 5.55034 5.57065 5.69739 5.73091 5.76794 5.78842 5.81627 5.88147 6.00990 6.02450 6.17490 6.61211 6.73078 6.77793 7.66238 7.92048 8.50316 8.54146 9.27389 10.82022 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.024745 B = 0.002047 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.280841 B =13672.184605 C =14355.503624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.085 3.915 3 H 0.045 0.955 4 C -0.117 4.117 5 C 0.146 3.854 6 H 0.083 0.917 7 N -0.733 5.733 8 C 0.531 3.469 9 O -0.518 6.518 10 C -0.131 4.131 11 S -0.117 6.117 12 C -0.607 4.607 13 H 0.065 0.935 14 C 0.035 3.965 15 N -0.884 5.884 16 Si 1.084 2.916 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.127 4.127 21 C 0.060 3.940 22 N -0.528 5.528 23 C 0.062 3.938 24 C -0.127 4.127 25 C -0.114 4.114 26 Cl -0.095 7.095 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.398 0.602 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.278 0.722 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.037 0.963 40 H 0.054 0.946 41 H 0.094 0.906 42 H 0.140 0.860 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.120 0.492 19.343 30.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 H 0.063 0.937 4 C -0.155 4.155 5 C 0.041 3.959 6 H 0.102 0.898 7 N -0.386 5.386 8 C 0.317 3.683 9 O -0.393 6.393 10 C -0.282 4.282 11 S 0.110 5.890 12 C -0.755 4.755 13 H 0.084 0.916 14 C -0.176 4.176 15 N -0.518 5.518 16 Si 0.910 3.090 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.166 4.166 21 C -0.068 4.068 22 N -0.254 5.254 23 C -0.065 4.065 24 C -0.146 4.146 25 C -0.159 4.159 26 Cl -0.067 7.067 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.232 0.768 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.158 0.842 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.893 1.223 19.049 28.300 hybrid contribution -2.024 -0.284 0.361 2.075 sum -22.917 0.940 19.409 30.047 Atomic orbital electron populations 1.21928 0.93977 1.02724 1.01936 1.21528 0.95462 0.95675 0.89654 0.93728 1.21900 0.94267 1.02177 0.97158 1.20922 0.93134 0.96786 0.85052 0.89847 1.46031 1.17268 1.42879 1.32404 1.20287 0.80819 0.82774 0.84391 1.90696 1.55745 1.33063 1.59751 1.23320 1.04166 1.02846 0.97879 1.84819 1.09923 1.54280 1.40004 1.23702 1.07336 1.27370 1.17123 0.91631 1.26060 0.91337 0.98274 1.01903 1.70799 1.35250 1.20382 1.25389 0.83330 0.76567 0.74885 0.74228 1.20278 1.21126 1.21140 1.21992 1.01206 1.00164 0.93197 1.22046 0.86445 0.99378 0.98902 1.61997 1.07530 1.54764 1.01083 1.21459 1.01096 0.95867 0.88083 1.23149 0.96826 1.00908 0.93743 1.24570 1.03493 0.86078 1.01732 1.98366 1.92207 1.17825 1.98273 0.92480 0.91823 0.91435 0.90721 0.90364 0.76806 0.89021 0.88992 0.90990 0.90917 0.90619 0.90422 0.94480 0.92754 0.88843 0.84238 0.83402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.54 37.16 0.32 -0.60 16 2 C 0.09 0.69 2.44 -67.72 -0.17 0.52 16 3 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 4 C -0.12 -1.01 4.84 -26.65 -0.13 -1.14 16 5 C 0.15 1.72 2.52 -67.81 -0.17 1.55 16 6 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16 7 N -0.73 -9.66 5.08 -53.69 -0.27 -9.93 16 8 C 0.53 9.83 7.81 -10.99 -0.09 9.74 16 9 O -0.52 -11.65 15.53 5.56 0.09 -11.57 16 10 C -0.13 -2.65 6.16 36.01 0.22 -2.43 16 11 S -0.12 -3.16 19.60 -107.50 -2.11 -5.27 16 12 C -0.61 -17.59 9.50 30.94 0.29 -17.30 16 13 H 0.07 1.81 7.80 -52.49 -0.41 1.41 16 14 C 0.03 1.02 5.49 -17.43 -0.10 0.92 16 15 N -0.88 -27.67 13.67 55.49 0.76 -26.92 16 16 Si 1.08 25.01 29.92 -169.99 -5.09 19.93 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 19 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 20 C -0.13 -1.45 5.67 -26.65 -0.15 -1.60 16 21 C 0.06 0.60 5.31 -3.84 -0.02 0.58 16 22 N -0.53 -4.38 4.48 -228.13 -1.02 -5.40 16 23 C 0.06 0.44 4.98 -4.98 -0.02 0.42 16 24 C -0.13 -0.79 8.53 -36.07 -0.31 -1.10 16 25 C -0.11 -0.71 10.82 28.97 0.31 -0.39 16 26 Cl -0.09 -0.76 26.97 -51.86 -1.40 -2.16 16 27 H 0.06 0.32 6.53 -51.93 -0.34 -0.02 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.40 4.10 8.60 -40.82 -0.35 3.75 16 33 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 34 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 35 H 0.28 8.88 7.12 -40.82 -0.29 8.59 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.06 8.14 -51.92 -0.42 0.63 16 38 H 0.08 0.74 7.10 -51.93 -0.37 0.37 16 39 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.05 0.44 5.99 -51.92 -0.31 0.13 16 41 H 0.09 0.58 5.81 -51.93 -0.30 0.28 16 42 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 43 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -34.34 373.26 -10.06 -44.39 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.63 Total: 2.12 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 0.00 Total: -10.82 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -0.54 Total: -42.25 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.09 Total: 19.93 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.11 Total: -5.27 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.40 Total: -2.16 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.34 -10.06 -44.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674115560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.407 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds