Wall clock time and date at job start Tue Mar 31 2020 17:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.45244 * 2 1 4 4 C 1.53042 * 109.45971 * 240.02939 * 2 1 3 5 5 C 1.53118 * 109.27557 * 180.80434 * 4 2 1 6 6 H 1.08996 * 109.57643 * 297.71849 * 5 4 2 7 7 N 1.46504 * 109.52330 * 177.56051 * 5 4 2 8 8 C 1.34774 * 120.00256 * 155.32135 * 7 5 4 9 9 O 1.21278 * 119.99847 * 359.97438 * 8 7 5 10 10 C 1.50703 * 119.99968 * 180.02562 * 8 7 5 11 11 S 1.80999 * 109.46918 * 179.97438 * 10 8 7 12 12 C 1.76205 * 99.99886 * 179.97438 * 11 10 8 13 13 H 1.07993 * 119.99653 * 0.02562 * 12 11 10 14 14 C 1.38796 * 119.99724 * 180.02562 * 12 11 10 15 15 N 1.31633 * 120.00134 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99786 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47147 * 179.97438 * 16 14 12 18 18 H 1.48502 * 109.47023 * 299.99757 * 16 14 12 19 19 H 1.48496 * 109.47194 * 59.99949 * 16 14 12 20 20 C 1.53119 * 109.15884 * 57.65584 * 5 4 2 21 21 C 1.53035 * 109.28143 * 302.34286 * 20 5 4 22 22 N 1.46840 * 109.46288 * 119.98085 * 2 1 3 23 23 C 1.46906 * 110.99665 * 305.85342 * 22 2 1 24 24 C 1.50695 * 109.47153 * 169.94533 * 23 22 2 25 25 C 1.31158 * 120.00560 * 124.99745 * 24 23 22 26 26 Cl 1.73608 * 119.99716 * 359.97438 * 25 24 23 27 27 H 1.08994 * 109.47186 * 306.99057 * 1 2 3 28 28 H 1.09007 * 109.47200 * 66.98847 * 1 2 3 29 29 H 1.09001 * 109.47347 * 186.98295 * 1 2 3 30 30 H 1.08994 * 109.50363 * 60.86797 * 4 2 1 31 31 H 1.08997 * 109.50557 * 300.74647 * 4 2 1 32 32 H 0.97000 * 119.99576 * 335.31418 * 7 5 4 33 33 H 1.08999 * 109.47163 * 59.99803 * 10 8 7 34 34 H 1.08997 * 109.46986 * 299.99734 * 10 8 7 35 35 H 0.96993 * 120.00095 * 0.02562 * 15 14 12 36 36 H 1.09002 * 109.50363 * 62.28968 * 20 5 4 37 37 H 1.09007 * 109.50442 * 182.40429 * 20 5 4 38 38 H 1.08992 * 109.46628 * 179.19979 * 21 20 5 39 39 H 1.09002 * 109.45760 * 299.16661 * 21 20 5 40 40 H 1.09009 * 109.47140 * 289.93885 * 23 22 2 41 41 H 1.08996 * 109.47219 * 49.93933 * 23 22 2 42 42 H 1.08006 * 119.99886 * 304.99745 * 24 23 22 43 43 H 1.07997 * 120.00590 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5709 -0.7360 -1.2357 6 1 3.9465 0.2867 -1.2678 7 7 4.0641 -1.4755 -2.4002 8 6 5.2961 -1.2244 -2.8857 9 8 5.9962 -0.3859 -2.3588 10 6 5.8032 -1.9847 -4.0840 11 16 7.4755 -1.4244 -4.4905 12 6 7.8110 -2.4487 -5.8845 13 1 7.0676 -3.1522 -6.2289 14 6 9.0308 -2.3514 -6.5396 15 7 9.9367 -1.4935 -6.1199 16 14 9.3862 -3.4368 -8.0178 17 1 10.7470 -3.1410 -8.5333 18 1 9.3086 -4.8638 -7.6141 19 1 8.3853 -3.1681 -9.0813 20 6 4.0547 -1.4188 0.0466 21 6 3.4864 -0.6778 1.2590 22 7 2.0193 -0.6918 1.1992 23 6 1.4372 -0.1107 2.4165 24 6 1.7607 -0.9897 3.5970 25 6 2.3610 -0.4828 4.6472 26 17 2.7838 1.2007 4.6770 27 1 -0.3633 0.6183 0.8208 28 1 -0.3634 0.4018 -0.9459 29 1 -0.3634 -1.0200 0.1249 30 1 1.6895 -0.1981 -2.1399 31 1 1.6658 -1.7446 -1.2578 32 1 3.5040 -2.1459 -2.8218 33 1 5.1439 -1.8059 -4.9334 34 1 5.8220 -3.0506 -3.8567 35 1 9.7520 -0.9297 -5.3526 36 1 3.7124 -2.4537 0.0592 37 1 5.1439 -1.3948 0.0831 38 1 3.8174 -1.1700 2.1734 39 1 3.8403 0.3531 1.2531 40 1 1.8532 0.8837 2.5792 41 1 0.3556 -0.0380 2.3031 42 1 1.4980 -2.0372 3.5783 43 1 2.5924 -1.1127 5.4934 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674115560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:16 Heat of formation + Delta-G solvation = -58.477376 kcal Electronic energy + Delta-G solvation = -23612.756657 eV Core-core repulsion = 20036.824564 eV Total energy + Delta-G solvation = -3575.932092 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.24847 -39.99899 -37.79627 -36.50339 -34.75487 -34.62009 -33.42047 -32.32243 -30.43019 -28.10501 -27.13915 -26.71179 -24.03215 -22.84682 -21.61021 -20.87471 -20.78155 -20.33665 -18.05858 -17.66377 -17.32941 -16.83833 -16.52508 -16.31782 -15.88770 -15.75870 -15.67839 -15.07319 -14.95100 -14.62726 -14.53539 -14.43586 -13.84845 -13.77153 -13.50936 -13.21038 -12.96615 -12.90936 -12.76705 -12.73392 -12.61236 -12.22843 -11.95526 -11.92465 -11.81006 -11.66399 -11.56310 -11.49837 -11.09764 -10.98101 -10.32960 -10.17187 -10.00423 -9.34438 -8.92864 -8.87677 -6.28110 0.94381 1.19562 1.44384 1.51201 1.52137 1.60840 1.80986 2.16298 2.35024 2.85175 3.02039 3.13389 3.60726 3.74368 3.81748 3.87412 3.94684 4.08953 4.16811 4.25859 4.32071 4.36310 4.38925 4.45165 4.47626 4.57798 4.71983 4.79773 4.83727 4.90739 5.00744 5.03118 5.11305 5.17045 5.23353 5.32439 5.38985 5.45308 5.63951 6.03551 6.07538 6.14314 6.44933 7.06052 7.17031 8.50565 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.024745 B = 0.002047 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.280841 B =13672.184605 C =14355.503624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.083 3.917 3 H 0.030 0.970 4 C -0.106 4.106 5 C 0.145 3.855 6 H 0.054 0.946 7 N -0.705 5.705 8 C 0.534 3.466 9 O -0.566 6.566 10 C -0.109 4.109 11 S -0.198 6.198 12 C -0.613 4.613 13 H 0.076 0.924 14 C -0.021 4.021 15 N -0.914 5.914 16 Si 1.137 2.863 17 H -0.281 1.281 18 H -0.262 1.262 19 H -0.263 1.263 20 C -0.120 4.120 21 C 0.069 3.931 22 N -0.522 5.522 23 C 0.060 3.940 24 C -0.127 4.127 25 C -0.116 4.116 26 Cl -0.116 7.116 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.417 0.583 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.260 0.740 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.018 0.982 40 H 0.042 0.958 41 H 0.108 0.892 42 H 0.157 0.843 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.133 -1.652 19.137 32.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 H 0.048 0.952 4 C -0.144 4.144 5 C 0.041 3.959 6 H 0.072 0.928 7 N -0.358 5.358 8 C 0.319 3.681 9 O -0.444 6.444 10 C -0.260 4.260 11 S 0.028 5.972 12 C -0.760 4.760 13 H 0.094 0.906 14 C -0.224 4.224 15 N -0.549 5.549 16 Si 0.954 3.046 17 H -0.206 1.206 18 H -0.187 1.187 19 H -0.187 1.187 20 C -0.159 4.159 21 C -0.060 4.060 22 N -0.247 5.247 23 C -0.066 4.066 24 C -0.146 4.146 25 C -0.161 4.161 26 Cl -0.088 7.088 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.255 0.745 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.037 0.963 40 H 0.060 0.940 41 H 0.126 0.874 42 H 0.174 0.826 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -23.988 -0.939 18.868 30.534 hybrid contribution -1.213 0.392 0.526 1.379 sum -25.201 -0.547 19.394 31.804 Atomic orbital electron populations 1.21878 0.91902 1.03340 1.02746 1.21595 0.97003 0.94763 0.89244 0.95155 1.21861 0.91109 1.03469 0.97983 1.21048 0.95476 0.95015 0.84410 0.92750 1.45788 1.15411 1.42511 1.32121 1.20039 0.82028 0.82128 0.83885 1.90691 1.57475 1.35205 1.61071 1.23226 0.99510 1.03816 0.99460 1.85086 1.16119 1.55551 1.40398 1.24032 1.07693 1.27185 1.17113 0.90585 1.27866 0.91258 0.98689 1.04547 1.70918 1.36412 1.21898 1.25667 0.82716 0.76734 0.74026 0.71085 1.20604 1.18715 1.18727 1.21890 0.99294 1.01018 0.93705 1.21901 0.87755 0.98074 0.98280 1.62038 1.06113 1.54784 1.01775 1.21518 1.01752 0.95470 0.87897 1.23253 0.96730 1.01470 0.93175 1.24883 1.03437 0.85084 1.02663 1.98366 1.92406 1.19725 1.98335 0.91820 0.91007 0.90797 0.89779 0.88649 0.74523 0.86970 0.87002 0.92906 0.89656 0.93802 0.89876 0.96322 0.93964 0.87409 0.82599 0.81393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.54 71.98 0.61 -0.71 16 2 C 0.08 1.18 2.44 44.94 0.11 1.29 16 3 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 4 C -0.11 -1.58 4.84 30.65 0.15 -1.43 16 5 C 0.15 3.32 2.52 45.07 0.11 3.43 16 6 H 0.05 1.60 7.58 -2.39 -0.02 1.58 16 7 N -0.71 -17.52 5.08 -442.16 -2.25 -19.77 16 8 C 0.53 19.61 7.81 87.66 0.68 20.30 16 9 O -0.57 -26.36 15.53 -3.02 -0.05 -26.41 16 10 C -0.11 -4.29 6.16 71.24 0.44 -3.86 16 11 S -0.20 -11.01 19.60 -56.49 -1.11 -12.11 16 12 C -0.61 -35.47 9.50 67.95 0.65 -34.82 16 13 H 0.08 4.10 7.80 -2.91 -0.02 4.08 16 14 C -0.02 -1.21 5.49 84.86 0.47 -0.74 16 15 N -0.91 -58.55 13.67 21.65 0.30 -58.26 16 16 Si 1.14 49.35 29.92 68.60 2.05 51.40 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 20 C -0.12 -2.70 5.67 30.65 0.17 -2.53 16 21 C 0.07 1.32 5.31 86.33 0.46 1.78 16 22 N -0.52 -7.73 4.48 -875.66 -3.93 -11.65 16 23 C 0.06 0.76 4.98 85.55 0.43 1.18 16 24 C -0.13 -1.31 8.53 25.49 0.22 -1.09 16 25 C -0.12 -1.26 10.82 67.62 0.73 -0.53 16 26 Cl -0.12 -1.82 26.97 -2.72 -0.07 -1.90 16 27 H 0.06 0.53 6.53 -2.39 -0.02 0.52 16 28 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.42 7.29 8.60 -92.71 -0.80 6.50 16 33 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 34 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 35 H 0.26 17.35 7.12 -92.71 -0.66 16.69 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.08 1.52 7.10 -2.39 -0.02 1.50 16 39 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.04 0.66 5.99 -2.38 -0.01 0.64 16 41 H 0.11 1.06 5.81 -2.39 -0.01 1.05 16 42 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 43 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -77.77 373.26 0.50 -77.27 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.32 Total: 19.15 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 5.23 Total: -17.73 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -5.88 Total: -89.68 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.41 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 2.05 Total: 51.40 kcal Atomic # 16 Polarization: -11.01 SS G_CDS: -1.11 Total: -12.11 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.07 Total: -1.90 kcal Total: -77.77 0.50 -77.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674115560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.796 kcal (2) G-P(sol) polarization free energy of solvation -77.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds