Wall clock time and date at job start Tue Mar 31 2020 16:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31244 * 124.05957 * 2 1 4 4 N 1.27337 * 120.03394 * 180.36865 * 3 2 1 5 5 S 1.56632 * 109.74522 * 359.68723 * 4 3 2 6 6 C 1.38252 * 124.05328 * 179.81376 * 2 1 3 7 7 C 1.47176 * 128.47417 * 359.97115 * 6 2 1 8 8 O 1.21623 * 119.99888 * 359.70944 * 7 6 2 9 9 N 1.34775 * 119.99988 * 179.70280 * 7 6 2 10 10 C 1.46496 * 119.99828 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47070 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47002 * 64.99868 * 11 10 9 13 13 N 1.46504 * 109.46883 * 305.00371 * 11 10 9 14 14 C 1.36937 * 119.99777 * 154.99950 * 13 11 10 15 15 H 1.08003 * 119.99797 * 359.97438 * 14 13 11 16 16 C 1.38806 * 120.00162 * 179.97438 * 14 13 11 17 17 N 1.31617 * 120.00325 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99825 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47263 * 89.99889 * 18 16 14 20 20 H 1.48502 * 109.47263 * 209.99728 * 18 16 14 21 21 H 1.48499 * 109.47274 * 329.99944 * 18 16 14 22 22 C 1.50697 * 109.47239 * 184.99799 * 11 10 9 23 23 C 1.38244 * 119.99609 * 79.73078 * 22 11 10 24 24 C 1.38228 * 119.99616 * 179.78772 * 23 22 11 25 25 C 1.38237 * 120.00222 * 0.43996 * 24 23 22 26 26 C 1.38236 * 120.00064 * 359.81332 * 25 24 23 27 27 C 1.38232 * 120.00191 * 260.00377 * 22 11 10 28 28 H 1.09000 * 109.47237 * 270.19312 * 1 2 3 29 29 H 1.09004 * 109.46468 * 30.18396 * 1 2 3 30 30 H 1.08994 * 109.47287 * 150.18881 * 1 2 3 31 31 H 0.97001 * 119.99767 * 0.02562 * 9 7 6 32 32 H 1.09004 * 109.47055 * 60.00770 * 10 9 7 33 33 H 1.08992 * 109.47401 * 300.00078 * 10 9 7 34 34 H 0.96990 * 120.00057 * 334.99453 * 13 11 10 35 35 H 0.97001 * 120.00067 * 180.02562 * 17 16 14 36 36 H 1.07997 * 119.99876 * 359.97438 * 23 22 11 37 37 H 1.08000 * 119.99964 * 180.26975 * 24 23 22 38 38 H 1.08001 * 120.00404 * 179.83613 * 25 24 23 39 39 H 1.07995 * 119.99990 * 180.02562 * 26 25 24 40 40 H 1.08000 * 120.00044 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9979 -0.0071 5 16 3.9366 -0.5098 -0.0067 6 6 2.2812 -1.1454 0.0037 7 6 1.8393 -2.5493 0.0089 8 8 0.6520 -2.8130 0.0156 9 7 2.7502 -3.5425 0.0059 10 6 2.3104 -4.9399 0.0105 11 6 3.5332 -5.8595 0.0065 12 1 4.0889 -5.7291 0.9351 13 7 4.3944 -5.5218 -1.1295 14 6 5.7327 -5.8082 -1.0829 15 1 6.1533 -6.2826 -0.2086 16 6 6.5487 -5.4887 -2.1594 17 7 7.8351 -5.7634 -2.1145 18 14 5.8213 -4.6675 -3.6714 19 1 5.8785 -3.1924 -3.5094 20 1 6.5992 -5.0641 -4.8726 21 1 4.4079 -5.0931 -3.8342 22 6 3.0834 -7.2929 -0.1126 23 6 2.7299 -7.8060 -1.3466 24 6 2.3216 -9.1220 -1.4566 25 6 2.2579 -9.9223 -0.3312 26 6 2.6063 -9.4077 0.9035 27 6 3.0188 -8.0928 1.0129 28 1 -0.3634 0.0035 1.0276 29 1 -0.3632 0.8884 -0.5167 30 1 -0.3633 -0.8916 -0.5109 31 1 3.6971 -3.3321 0.0008 32 1 1.7068 -5.1336 -0.8762 33 1 1.7156 -5.1307 0.9037 34 1 4.0167 -5.0955 -1.9145 35 1 8.4054 -5.5399 -2.8667 36 1 2.7758 -7.1796 -2.2252 37 1 2.0496 -9.5242 -2.4213 38 1 1.9363 -10.9498 -0.4167 39 1 2.5570 -10.0330 1.7826 40 1 3.2912 -7.6908 1.9775 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691771526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:49 Heat of formation + Delta-G solvation = 77.161951 kcal Electronic energy + Delta-G solvation = -25380.431012 eV Core-core repulsion = 21709.273189 eV Total energy + Delta-G solvation = -3671.157824 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.07944 -39.68907 -38.88919 -36.23409 -33.93305 -33.40622 -32.17718 -30.57855 -30.10383 -29.24198 -27.42782 -27.00222 -24.04858 -22.94301 -22.23578 -21.90337 -20.50652 -20.01625 -18.61813 -18.13921 -17.38057 -16.47570 -16.25433 -15.89522 -15.50128 -14.87030 -14.70705 -14.55699 -14.28394 -14.14080 -13.49931 -13.24762 -13.18174 -13.14177 -12.96673 -12.93559 -12.60201 -12.54639 -12.27704 -11.65932 -11.53388 -11.14529 -11.00665 -10.87293 -10.63989 -10.45637 -10.30603 -10.12453 -9.96833 -9.86224 -9.75301 -9.21589 -9.08787 -8.53010 -8.33926 -7.53625 -5.93544 -3.33191 -0.39000 0.70769 1.35578 1.73097 1.79675 1.80103 2.88324 2.98176 3.22084 3.24566 3.33574 3.74751 4.16475 4.41703 4.41926 4.64073 4.91728 5.13336 5.18379 5.24076 5.28755 5.33476 5.40935 5.45430 5.53330 5.55957 5.58643 5.85012 5.91591 5.94177 5.98109 6.18793 6.29648 6.42032 6.46126 6.81841 6.86995 7.09915 7.34298 7.39700 7.52714 7.78561 7.99562 8.23546 8.98881 9.70549 9.87050 11.23897 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.010482 B = 0.004237 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.597441 B = 6607.402348 C = 8482.089998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.098 3.902 3 N -0.255 5.255 4 N -0.259 5.259 5 S 0.439 5.561 6 C -0.296 4.296 7 C 0.600 3.400 8 O -0.523 6.523 9 N -0.707 5.707 10 C 0.118 3.882 11 C 0.203 3.797 12 H 0.077 0.923 13 N -0.740 5.740 14 C -0.250 4.250 15 H 0.093 0.907 16 C 0.016 3.984 17 N -0.925 5.925 18 Si 0.873 3.127 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.277 1.277 22 C -0.081 4.081 23 C -0.088 4.088 24 C -0.126 4.126 25 C -0.131 4.131 26 C -0.127 4.127 27 C -0.115 4.115 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.410 0.590 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.363 0.637 35 H 0.261 0.739 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.959 3.357 5.745 14.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.050 4.050 3 N -0.121 5.121 4 N -0.240 5.240 5 S 0.575 5.425 6 C -0.437 4.437 7 C 0.383 3.617 8 O -0.400 6.400 9 N -0.360 5.360 10 C -0.006 4.006 11 C 0.093 3.907 12 H 0.095 0.905 13 N -0.382 5.382 14 C -0.380 4.380 15 H 0.111 0.889 16 C -0.181 4.181 17 N -0.571 5.571 18 Si 0.703 3.297 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.203 1.203 22 C -0.085 4.085 23 C -0.106 4.106 24 C -0.144 4.144 25 C -0.149 4.149 26 C -0.145 4.145 27 C -0.134 4.134 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.247 0.753 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.197 0.803 35 H 0.072 0.928 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.877 4.234 5.795 13.877 hybrid contribution -0.946 -0.123 -1.336 1.641 sum -12.822 4.112 4.458 14.184 Atomic orbital electron populations 1.20506 0.83855 1.04901 1.04248 1.22948 1.00169 0.85081 0.96766 1.70635 0.97004 1.28010 1.16471 1.78805 1.09402 1.16291 1.19467 1.83007 1.09164 1.00702 1.49605 1.27821 0.98377 1.00133 1.17347 1.16416 0.85957 0.81952 0.77333 1.90791 1.15756 1.83146 1.50341 1.45908 1.10177 1.06286 1.73582 1.21772 0.97279 0.78730 1.02843 1.19457 0.89535 0.88142 0.93587 0.90518 1.42857 1.06221 1.72941 1.16197 1.19001 0.81484 1.34505 1.02974 0.88887 1.24625 0.95256 1.00684 0.97535 1.69678 1.03501 1.52053 1.31892 0.86750 0.78490 0.79872 0.84575 1.20833 1.21517 1.20320 1.20782 0.96672 0.97922 0.93103 1.20925 0.97021 0.95123 0.97522 1.21087 1.00798 0.94404 0.98143 1.21008 1.01563 0.99286 0.93067 1.21013 1.00607 0.95616 0.97266 1.21006 1.00256 0.94019 0.98142 0.89419 0.90023 0.88062 0.75341 0.90946 0.90355 0.80341 0.92827 0.86438 0.86805 0.86932 0.86787 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 9.89 36.01 0.36 -0.40 16 2 C 0.10 1.25 7.00 -82.84 -0.58 0.67 16 3 N -0.26 -3.57 11.54 33.42 0.39 -3.18 16 4 N -0.26 -3.62 12.51 60.35 0.75 -2.86 16 5 S 0.44 5.40 23.05 -107.50 -2.48 2.92 16 6 C -0.30 -3.88 6.81 -35.95 -0.24 -4.12 16 7 C 0.60 8.47 7.80 -12.63 -0.10 8.38 16 8 O -0.52 -8.24 14.90 5.26 0.08 -8.16 16 9 N -0.71 -9.77 5.38 -61.47 -0.33 -10.10 16 10 C 0.12 1.64 5.21 -4.04 -0.02 1.62 16 11 C 0.20 3.27 2.64 -69.08 -0.18 3.09 16 12 H 0.08 1.23 7.94 -51.93 -0.41 0.82 16 13 N -0.74 -14.68 3.62 -54.55 -0.20 -14.87 16 14 C -0.25 -6.18 10.40 -15.06 -0.16 -6.34 16 15 H 0.09 2.53 8.06 -52.48 -0.42 2.10 16 16 C 0.02 0.42 5.50 -17.43 -0.10 0.33 16 17 N -0.92 -26.99 13.97 55.49 0.78 -26.21 16 18 Si 0.87 20.22 27.74 -169.99 -4.71 15.50 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.04 6.52 56.52 0.37 -5.67 16 22 C -0.08 -1.31 4.92 -104.62 -0.51 -1.83 16 23 C -0.09 -1.45 9.32 -39.58 -0.37 -1.81 16 24 C -0.13 -1.86 10.05 -39.59 -0.40 -2.26 16 25 C -0.13 -1.78 10.05 -39.58 -0.40 -2.17 16 26 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 27 C -0.12 -1.68 9.67 -39.58 -0.38 -2.06 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.10 6.48 -51.93 -0.34 0.77 16 31 H 0.41 5.64 7.57 -40.82 -0.31 5.34 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.36 7.25 5.66 -40.82 -0.23 7.02 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.12 2.01 7.73 -52.49 -0.41 1.61 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.47 8.04 -52.49 -0.42 1.05 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -30.15 359.25 -8.46 -38.62 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -4.67 Total: 11.96 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -3.48 Total: -9.02 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 1.39 Total: -57.23 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.08 Total: -8.16 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.71 Total: 15.50 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -2.48 Total: 2.92 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.15 -8.46 -38.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691771526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.778 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds