Wall clock time and date at job start Tue Mar 31 2020 16:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31244 * 124.05957 * 2 1 4 4 N 1.27337 * 120.03394 * 180.36865 * 3 2 1 5 5 S 1.56632 * 109.74522 * 359.68723 * 4 3 2 6 6 C 1.38252 * 124.05328 * 179.81376 * 2 1 3 7 7 C 1.47176 * 128.47417 * 359.97115 * 6 2 1 8 8 O 1.21623 * 119.99888 * 359.70944 * 7 6 2 9 9 N 1.34775 * 119.99988 * 179.70280 * 7 6 2 10 10 C 1.46496 * 119.99828 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47070 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47002 * 64.99868 * 11 10 9 13 13 N 1.46504 * 109.46883 * 305.00371 * 11 10 9 14 14 C 1.36937 * 119.99777 * 154.99950 * 13 11 10 15 15 H 1.08003 * 119.99797 * 359.97438 * 14 13 11 16 16 C 1.38806 * 120.00162 * 179.97438 * 14 13 11 17 17 N 1.31617 * 120.00325 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99825 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47263 * 89.99889 * 18 16 14 20 20 H 1.48502 * 109.47263 * 209.99728 * 18 16 14 21 21 H 1.48499 * 109.47274 * 329.99944 * 18 16 14 22 22 C 1.50697 * 109.47239 * 184.99799 * 11 10 9 23 23 C 1.38244 * 119.99609 * 79.73078 * 22 11 10 24 24 C 1.38228 * 119.99616 * 179.78772 * 23 22 11 25 25 C 1.38237 * 120.00222 * 0.43996 * 24 23 22 26 26 C 1.38236 * 120.00064 * 359.81332 * 25 24 23 27 27 C 1.38232 * 120.00191 * 260.00377 * 22 11 10 28 28 H 1.09000 * 109.47237 * 270.19312 * 1 2 3 29 29 H 1.09004 * 109.46468 * 30.18396 * 1 2 3 30 30 H 1.08994 * 109.47287 * 150.18881 * 1 2 3 31 31 H 0.97001 * 119.99767 * 0.02562 * 9 7 6 32 32 H 1.09004 * 109.47055 * 60.00770 * 10 9 7 33 33 H 1.08992 * 109.47401 * 300.00078 * 10 9 7 34 34 H 0.96990 * 120.00057 * 334.99453 * 13 11 10 35 35 H 0.97001 * 120.00067 * 180.02562 * 17 16 14 36 36 H 1.07997 * 119.99876 * 359.97438 * 23 22 11 37 37 H 1.08000 * 119.99964 * 180.26975 * 24 23 22 38 38 H 1.08001 * 120.00404 * 179.83613 * 25 24 23 39 39 H 1.07995 * 119.99990 * 180.02562 * 26 25 24 40 40 H 1.08000 * 120.00044 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9979 -0.0071 5 16 3.9366 -0.5098 -0.0067 6 6 2.2812 -1.1454 0.0037 7 6 1.8393 -2.5493 0.0089 8 8 0.6520 -2.8130 0.0156 9 7 2.7502 -3.5425 0.0059 10 6 2.3104 -4.9399 0.0105 11 6 3.5332 -5.8595 0.0065 12 1 4.0889 -5.7291 0.9351 13 7 4.3944 -5.5218 -1.1295 14 6 5.7327 -5.8082 -1.0829 15 1 6.1533 -6.2826 -0.2086 16 6 6.5487 -5.4887 -2.1594 17 7 7.8351 -5.7634 -2.1145 18 14 5.8213 -4.6675 -3.6714 19 1 5.8785 -3.1924 -3.5094 20 1 6.5992 -5.0641 -4.8726 21 1 4.4079 -5.0931 -3.8342 22 6 3.0834 -7.2929 -0.1126 23 6 2.7299 -7.8060 -1.3466 24 6 2.3216 -9.1220 -1.4566 25 6 2.2579 -9.9223 -0.3312 26 6 2.6063 -9.4077 0.9035 27 6 3.0188 -8.0928 1.0129 28 1 -0.3634 0.0035 1.0276 29 1 -0.3632 0.8884 -0.5167 30 1 -0.3633 -0.8916 -0.5109 31 1 3.6971 -3.3321 0.0008 32 1 1.7068 -5.1336 -0.8762 33 1 1.7156 -5.1307 0.9037 34 1 4.0167 -5.0955 -1.9145 35 1 8.4054 -5.5399 -2.8667 36 1 2.7758 -7.1796 -2.2252 37 1 2.0496 -9.5242 -2.4213 38 1 1.9363 -10.9498 -0.4167 39 1 2.5570 -10.0330 1.7826 40 1 3.2912 -7.6908 1.9775 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691771526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:48 Heat of formation + Delta-G solvation = 57.973111 kcal Electronic energy + Delta-G solvation = -25381.263103 eV Core-core repulsion = 21709.273189 eV Total energy + Delta-G solvation = -3671.989914 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.10620 -40.85000 -40.04144 -37.56266 -35.37936 -34.39329 -33.80776 -31.86809 -31.51218 -30.30375 -28.55177 -28.02501 -25.55060 -24.38726 -23.35693 -23.03459 -21.67287 -21.23653 -19.87303 -19.60173 -18.59055 -17.69604 -17.31400 -17.01006 -16.89735 -16.13072 -16.04794 -15.82558 -15.57597 -15.19975 -14.85347 -14.71187 -14.32667 -14.19879 -14.08434 -14.01299 -13.93009 -13.55761 -13.47245 -13.06593 -12.88600 -12.57665 -12.46223 -12.22788 -11.98351 -11.79560 -11.68564 -11.53241 -11.22644 -11.01710 -11.00155 -10.84181 -10.23255 -9.66550 -9.58905 -9.29279 -7.98475 -5.33509 -1.42365 -0.28932 0.33884 0.59056 0.66009 0.77931 1.37261 1.39249 1.46480 1.78730 1.87480 2.48483 2.77414 3.01338 3.33173 3.43952 3.47280 3.62278 3.93882 4.13883 4.19377 4.22845 4.34074 4.34576 4.41473 4.67615 4.68425 4.76300 4.78956 4.81949 4.99417 5.11279 5.21087 5.29865 5.31022 5.71055 5.74172 5.79991 5.90609 6.22389 6.24457 6.28182 6.50299 6.87392 7.08589 7.80576 7.99525 9.22531 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.010482 B = 0.004237 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.597441 B = 6607.402348 C = 8482.089998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.100 3.900 3 N -0.270 5.270 4 N -0.278 5.278 5 S 0.471 5.529 6 C -0.309 4.309 7 C 0.605 3.395 8 O -0.539 6.539 9 N -0.707 5.707 10 C 0.129 3.871 11 C 0.206 3.794 12 H 0.078 0.922 13 N -0.738 5.738 14 C -0.215 4.215 15 H 0.063 0.937 16 C -0.048 4.048 17 N -0.978 5.978 18 Si 0.930 3.070 19 H -0.272 1.272 20 H -0.306 1.306 21 H -0.257 1.257 22 C -0.100 4.100 23 C -0.112 4.112 24 C -0.136 4.136 25 C -0.131 4.131 26 C -0.127 4.127 27 C -0.125 4.125 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.410 0.590 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.365 0.635 35 H 0.255 0.745 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.013 2.982 6.342 16.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.048 4.048 3 N -0.136 5.136 4 N -0.259 5.259 5 S 0.608 5.392 6 C -0.450 4.450 7 C 0.389 3.611 8 O -0.418 6.418 9 N -0.359 5.359 10 C 0.005 3.995 11 C 0.097 3.903 12 H 0.096 0.904 13 N -0.381 5.381 14 C -0.346 4.346 15 H 0.081 0.919 16 C -0.240 4.240 17 N -0.629 5.629 18 Si 0.758 3.242 19 H -0.197 1.197 20 H -0.233 1.233 21 H -0.182 1.182 22 C -0.103 4.103 23 C -0.130 4.130 24 C -0.154 4.154 25 C -0.149 4.149 26 C -0.145 4.145 27 C -0.143 4.143 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.247 0.753 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.199 0.801 35 H 0.065 0.935 36 H 0.122 0.878 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.998 3.868 6.421 15.878 hybrid contribution -0.357 -0.118 -1.394 1.443 sum -14.355 3.750 5.027 15.665 Atomic orbital electron populations 1.20605 0.82135 1.05320 1.05283 1.23352 1.01235 0.84608 0.95610 1.70675 0.97041 1.28610 1.17225 1.78696 1.09726 1.17452 1.19998 1.82870 1.08367 0.99595 1.48404 1.27765 0.99024 0.99780 1.18450 1.16429 0.85633 0.82200 0.76801 1.90783 1.16358 1.83472 1.51171 1.45889 1.10172 1.06253 1.73554 1.21656 0.96127 0.78260 1.03476 1.19558 0.89728 0.89027 0.91958 0.90440 1.42754 1.04874 1.72992 1.17457 1.18882 0.83335 1.31263 1.01099 0.91856 1.25236 0.95481 1.02685 1.00599 1.69844 1.05185 1.55104 1.32733 0.85801 0.78456 0.79399 0.80499 1.19748 1.23300 1.18168 1.20717 0.98071 0.97696 0.93814 1.20977 0.98683 0.96120 0.97252 1.21355 1.00546 0.93923 0.99596 1.21398 1.00451 1.00488 0.92603 1.21408 0.99261 0.95421 0.98439 1.21277 1.00098 0.94582 0.98357 0.87978 0.88378 0.88754 0.75318 0.91293 0.88708 0.80137 0.93546 0.87798 0.85243 0.84080 0.83880 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 9.89 71.24 0.70 -0.65 16 2 C 0.10 2.41 7.00 42.65 0.30 2.71 16 3 N -0.27 -7.22 11.54 -48.18 -0.56 -7.78 16 4 N -0.28 -7.48 12.51 37.02 0.46 -7.02 16 5 S 0.47 11.05 23.05 -56.49 -1.30 9.75 16 6 C -0.31 -7.69 6.81 24.62 0.17 -7.52 16 7 C 0.61 16.20 7.80 86.59 0.68 16.87 16 8 O -0.54 -16.15 14.90 -4.10 -0.06 -16.21 16 9 N -0.71 -18.51 5.38 -466.63 -2.51 -21.02 16 10 C 0.13 3.40 5.21 86.38 0.45 3.85 16 11 C 0.21 6.42 2.64 44.25 0.12 6.54 16 12 H 0.08 2.41 7.94 -2.39 -0.02 2.39 16 13 N -0.74 -28.80 3.62 -326.49 -1.18 -29.98 16 14 C -0.21 -10.70 10.40 84.03 0.87 -9.82 16 15 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 16 C -0.05 -2.58 5.50 84.86 0.47 -2.11 16 17 N -0.98 -58.71 13.97 21.65 0.30 -58.41 16 18 Si 0.93 41.85 27.74 68.60 1.90 43.75 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.31 -14.55 7.11 99.48 0.71 -13.85 16 21 H -0.26 -10.52 6.52 99.48 0.65 -9.87 16 22 C -0.10 -3.11 4.92 -19.87 -0.10 -3.20 16 23 C -0.11 -3.60 9.32 22.27 0.21 -3.39 16 24 C -0.14 -3.78 10.05 22.27 0.22 -3.56 16 25 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 26 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 27 C -0.12 -3.37 9.67 22.27 0.22 -3.15 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.09 1.91 6.48 -2.39 -0.02 1.89 16 31 H 0.41 10.77 7.57 -92.71 -0.70 10.07 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.36 14.12 5.66 -92.72 -0.52 13.59 16 35 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 36 H 0.10 3.53 7.73 -2.91 -0.02 3.51 16 37 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 38 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 39 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 40 H 0.13 3.06 8.04 -2.91 -0.02 3.04 16 Total: -1.00 -65.14 359.25 1.62 -63.52 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: -0.19 Total: 32.62 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 4.75 Total: -9.22 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -3.48 Total: -124.20 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.06 Total: -16.21 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.90 Total: 43.75 kcal Atomic # 16 Polarization: 11.05 SS G_CDS: -1.30 Total: 9.75 kcal Total: -65.14 1.62 -63.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691771526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.489 kcal (2) G-P(sol) polarization free energy of solvation -65.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds