Wall clock time and date at job start Tue Mar 31 2020 16:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31156 * 1 3 3 Cl 1.73601 * 120.00335 * 2 1 4 4 C 1.50700 * 119.99823 * 180.02562 * 2 1 3 5 5 N 1.46897 * 109.47322 * 114.99784 * 4 2 1 6 6 C 1.48557 * 111.00331 * 290.12512 * 5 4 2 7 7 C 1.54377 * 104.59844 * 200.95987 * 6 5 4 8 8 H 1.09002 * 110.32107 * 264.85320 * 7 6 5 9 9 N 1.46496 * 110.32293 * 142.75115 * 7 6 5 10 10 C 1.34777 * 120.00258 * 86.45613 * 9 7 6 11 11 O 1.21279 * 120.00166 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99762 * 179.97438 * 10 9 7 13 13 S 1.81003 * 109.46853 * 179.97438 * 12 10 9 14 14 C 1.76196 * 99.99846 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00030 * 359.97438 * 14 13 12 16 16 C 1.38802 * 119.99637 * 180.02562 * 14 13 12 17 17 N 1.31628 * 120.00513 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99570 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46946 * 90.00549 * 18 16 14 20 20 H 1.48504 * 109.46826 * 210.00017 * 18 16 14 21 21 H 1.48496 * 109.47486 * 329.99998 * 18 16 14 22 22 C 1.54259 * 105.05826 * 23.85087 * 7 6 5 23 23 C 1.53004 * 110.32213 * 118.89885 * 22 7 6 24 24 C 1.53001 * 110.32099 * 241.10040 * 22 7 6 25 25 C 1.48560 * 111.00106 * 174.70788 * 5 4 2 26 26 H 1.08001 * 120.00219 * 179.97438 * 1 2 3 27 27 H 1.08005 * 120.00110 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47385 * 354.99793 * 4 2 1 29 29 H 1.08996 * 109.47200 * 234.99709 * 4 2 1 30 30 H 1.09003 * 110.41356 * 82.17812 * 6 5 4 31 31 H 1.09005 * 110.41046 * 319.74153 * 6 5 4 32 32 H 0.96999 * 119.99694 * 266.45003 * 9 7 6 33 33 H 1.09000 * 109.47318 * 299.99141 * 12 10 9 34 34 H 1.09000 * 109.47161 * 59.99772 * 12 10 9 35 35 H 0.96995 * 120.00407 * 180.02562 * 17 16 14 36 36 H 1.08996 * 109.46993 * 59.99635 * 23 22 7 37 37 H 1.08994 * 109.46894 * 180.02562 * 23 22 7 38 38 H 1.09002 * 109.46820 * 300.00368 * 23 22 7 39 39 H 1.09001 * 109.46695 * 60.01041 * 24 22 7 40 40 H 1.09003 * 109.46541 * 180.02562 * 24 22 7 41 41 H 1.08996 * 109.47675 * 300.00151 * 24 22 7 42 42 H 1.09003 * 110.40786 * 277.81641 * 25 5 4 43 43 H 1.08992 * 110.41359 * 40.14354 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1797 1.5034 0.0000 4 6 2.0650 -1.3051 -0.0006 5 7 2.8167 -1.4361 -1.2558 6 6 1.9004 -1.6500 -2.4054 7 6 2.7864 -2.2905 -3.4953 8 1 3.1623 -1.5259 -4.1752 9 7 2.0295 -3.3020 -4.2369 10 6 1.2786 -2.9398 -5.2959 11 8 1.2292 -1.7763 -5.6347 12 6 0.5004 -3.9805 -6.0591 13 16 -0.4008 -3.1871 -7.4135 14 6 -1.1974 -4.5929 -8.1159 15 1 -1.0429 -5.5718 -7.6865 16 6 -2.0227 -4.4425 -9.2218 17 7 -2.2098 -3.2497 -9.7461 18 14 -2.8667 -5.9331 -9.9669 19 1 -4.1881 -6.1295 -9.3183 20 1 -3.0576 -5.7171 -11.4237 21 1 -2.0255 -7.1377 -9.7512 22 6 3.9520 -2.9487 -2.7286 23 6 3.9646 -4.4588 -2.9750 24 6 5.2847 -2.3288 -3.1534 25 6 3.6720 -2.6506 -1.2400 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.3601 -2.1317 0.0887 29 1 2.7572 -1.3255 0.8412 30 1 1.4980 -0.6985 -2.7531 31 1 1.0922 -2.3263 -2.1265 32 1 2.0688 -4.2325 -3.9658 33 1 1.1876 -4.7227 -6.4653 34 1 -0.2073 -4.4688 -5.3891 35 1 -2.7867 -3.1446 -10.5187 36 1 4.0858 -4.6520 -4.0408 37 1 4.7922 -4.9093 -2.4272 38 1 3.0243 -4.8906 -2.6321 39 1 5.2742 -1.2607 -2.9360 40 1 6.0977 -2.8037 -2.6043 41 1 5.4317 -2.4806 -4.2227 42 1 4.6039 -2.4524 -0.7103 43 1 3.1420 -3.4828 -0.7770 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717578979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:33 Heat of formation + Delta-G solvation = -18.263570 kcal Electronic energy + Delta-G solvation = -24116.308258 eV Core-core repulsion = 20542.119967 eV Total energy + Delta-G solvation = -3574.188291 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.56017 -38.54170 -37.06536 -35.52902 -33.48866 -32.63611 -32.43644 -30.06834 -28.35534 -27.44668 -26.83206 -25.49676 -24.29851 -21.80261 -20.36183 -20.17794 -19.30613 -17.85338 -16.60852 -16.49293 -16.05734 -15.63528 -15.34440 -14.81564 -14.68562 -14.64054 -14.13507 -14.01374 -13.67442 -13.45919 -13.40040 -12.80901 -12.60748 -12.52466 -12.39529 -12.29002 -12.08309 -11.96965 -11.67700 -11.48780 -11.14150 -11.09578 -11.06432 -11.03086 -10.87120 -10.77877 -10.69192 -9.82258 -9.44004 -9.38590 -9.08003 -8.94121 -8.77282 -8.24189 -6.50692 -6.22460 -3.93012 1.60328 2.09686 2.99894 3.07743 3.21301 3.26504 3.30183 3.58779 3.88312 4.12701 4.19548 4.28805 4.46515 4.59217 4.86807 4.97166 5.01894 5.10070 5.12699 5.14423 5.19957 5.28729 5.33167 5.33325 5.41933 5.58144 5.63762 5.67807 5.74212 5.80619 5.85660 5.90677 5.92535 5.94538 5.99660 6.11506 6.11977 6.38652 6.63038 6.73093 7.58491 7.69592 8.34181 8.61423 9.22790 10.84911 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.002644 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.907728 B =10587.457848 C =11617.942418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.061 4.061 3 Cl -0.077 7.077 4 C 0.082 3.918 5 N -0.500 5.500 6 C 0.024 3.976 7 C 0.153 3.847 8 H 0.101 0.899 9 N -0.735 5.735 10 C 0.531 3.469 11 O -0.514 6.514 12 C -0.154 4.154 13 S -0.058 6.058 14 C -0.536 4.536 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.918 3.082 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.074 4.074 23 C -0.147 4.147 24 C -0.134 4.134 25 C 0.042 3.958 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.399 0.601 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.268 0.732 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.400 0.071 22.638 25.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.088 4.088 3 Cl -0.049 7.049 4 C -0.047 4.047 5 N -0.223 5.223 6 C -0.105 4.105 7 C 0.047 3.953 8 H 0.119 0.881 9 N -0.392 5.392 10 C 0.317 3.683 11 O -0.387 6.387 12 C -0.304 4.304 13 S 0.168 5.832 14 C -0.684 4.684 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.075 4.075 23 C -0.205 4.205 24 C -0.191 4.191 25 C -0.086 4.086 26 H 0.138 0.862 27 H 0.132 0.868 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.236 0.764 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.626 2.737 21.868 25.399 hybrid contribution -1.076 -3.347 0.197 3.521 sum 11.550 -0.610 22.065 24.913 Atomic orbital electron populations 1.24078 0.93910 1.03864 0.99429 1.23108 0.93400 0.88109 1.04147 1.98376 1.78139 1.31641 1.96748 1.21391 0.96850 0.92355 0.94072 1.65401 1.18384 1.36546 1.02008 1.23616 0.94544 1.01494 0.90886 1.21624 0.90076 0.90857 0.92790 0.88114 1.46367 1.49724 1.11157 1.31963 1.20352 0.78606 0.89900 0.79470 1.90709 1.62125 1.19373 1.66516 1.23536 1.02296 1.01186 1.03425 1.85414 1.56354 1.12583 1.28826 1.22864 1.33351 0.94609 1.17608 0.90979 1.24990 0.95921 0.96833 0.95826 1.70013 1.36082 1.21776 1.22363 0.86177 0.79538 0.81559 0.78273 1.20282 1.20735 1.19712 1.21518 0.95958 0.95795 0.94192 1.21894 1.01760 0.93996 1.02807 1.21818 0.94545 1.01377 1.01384 1.23251 0.98160 0.91169 0.96026 0.86190 0.86751 0.92452 0.89068 0.89172 0.93250 0.76404 0.89294 0.89398 0.92169 0.91304 0.91838 0.92450 0.91484 0.92458 0.92292 0.89572 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 14.04 28.97 0.41 -1.05 16 2 C -0.06 -0.56 5.49 -36.07 -0.20 -0.76 16 3 Cl -0.08 -0.80 28.99 -51.86 -1.50 -2.31 16 4 C 0.08 0.67 5.13 -4.98 -0.03 0.64 16 5 N -0.50 -4.77 5.36 -231.42 -1.24 -6.01 16 6 C 0.02 0.27 5.69 -2.18 -0.01 0.26 16 7 C 0.15 1.82 2.99 -66.55 -0.20 1.62 16 8 H 0.10 1.46 7.22 -51.93 -0.37 1.09 16 9 N -0.74 -9.57 4.59 -52.47 -0.24 -9.81 16 10 C 0.53 9.69 7.84 -10.98 -0.09 9.61 16 11 O -0.51 -11.49 15.56 5.56 0.09 -11.40 16 12 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 13 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 14 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 15 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 16 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 18 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 C -0.07 -0.63 1.03 -153.13 -0.16 -0.79 16 23 C -0.15 -1.07 7.10 37.16 0.26 -0.81 16 24 C -0.13 -1.13 8.24 37.16 0.31 -0.82 16 25 C 0.04 0.33 5.58 -2.18 -0.01 0.31 16 26 H 0.12 0.86 7.84 -52.49 -0.41 0.44 16 27 H 0.11 0.92 8.06 -52.48 -0.42 0.49 16 28 H 0.06 0.42 7.53 -51.93 -0.39 0.03 16 29 H 0.09 0.65 8.13 -51.93 -0.42 0.23 16 30 H 0.09 1.27 8.12 -51.93 -0.42 0.85 16 31 H 0.05 0.57 7.74 -51.93 -0.40 0.17 16 32 H 0.40 4.14 5.79 -40.82 -0.24 3.91 16 33 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 34 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.07 0.56 7.72 -51.93 -0.40 0.16 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.39 6.96 -51.93 -0.36 0.02 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.60 7.86 -51.93 -0.41 0.20 16 43 H 0.05 0.33 7.69 -51.93 -0.40 -0.07 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -33.29 379.08 -9.71 -43.01 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.73 Total: 1.18 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 0.71 Total: -7.51 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: -0.75 Total: -41.17 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.29 -9.71 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717578979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.744 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds