Wall clock time and date at job start Tue Mar 31 2020 16:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31156 * 1 3 3 Cl 1.73601 * 120.00335 * 2 1 4 4 C 1.50700 * 119.99823 * 180.02562 * 2 1 3 5 5 N 1.46897 * 109.47322 * 114.99784 * 4 2 1 6 6 C 1.48557 * 111.00331 * 290.12512 * 5 4 2 7 7 C 1.54377 * 104.59844 * 200.95987 * 6 5 4 8 8 H 1.09002 * 110.32107 * 264.85320 * 7 6 5 9 9 N 1.46496 * 110.32293 * 142.75115 * 7 6 5 10 10 C 1.34777 * 120.00258 * 86.45613 * 9 7 6 11 11 O 1.21279 * 120.00166 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99762 * 179.97438 * 10 9 7 13 13 S 1.81003 * 109.46853 * 179.97438 * 12 10 9 14 14 C 1.76196 * 99.99846 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00030 * 359.97438 * 14 13 12 16 16 C 1.38802 * 119.99637 * 180.02562 * 14 13 12 17 17 N 1.31628 * 120.00513 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99570 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46946 * 90.00549 * 18 16 14 20 20 H 1.48504 * 109.46826 * 210.00017 * 18 16 14 21 21 H 1.48496 * 109.47486 * 329.99998 * 18 16 14 22 22 C 1.54259 * 105.05826 * 23.85087 * 7 6 5 23 23 C 1.53004 * 110.32213 * 118.89885 * 22 7 6 24 24 C 1.53001 * 110.32099 * 241.10040 * 22 7 6 25 25 C 1.48560 * 111.00106 * 174.70788 * 5 4 2 26 26 H 1.08001 * 120.00219 * 179.97438 * 1 2 3 27 27 H 1.08005 * 120.00110 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47385 * 354.99793 * 4 2 1 29 29 H 1.08996 * 109.47200 * 234.99709 * 4 2 1 30 30 H 1.09003 * 110.41356 * 82.17812 * 6 5 4 31 31 H 1.09005 * 110.41046 * 319.74153 * 6 5 4 32 32 H 0.96999 * 119.99694 * 266.45003 * 9 7 6 33 33 H 1.09000 * 109.47318 * 299.99141 * 12 10 9 34 34 H 1.09000 * 109.47161 * 59.99772 * 12 10 9 35 35 H 0.96995 * 120.00407 * 180.02562 * 17 16 14 36 36 H 1.08996 * 109.46993 * 59.99635 * 23 22 7 37 37 H 1.08994 * 109.46894 * 180.02562 * 23 22 7 38 38 H 1.09002 * 109.46820 * 300.00368 * 23 22 7 39 39 H 1.09001 * 109.46695 * 60.01041 * 24 22 7 40 40 H 1.09003 * 109.46541 * 180.02562 * 24 22 7 41 41 H 1.08996 * 109.47675 * 300.00151 * 24 22 7 42 42 H 1.09003 * 110.40786 * 277.81641 * 25 5 4 43 43 H 1.08992 * 110.41359 * 40.14354 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1797 1.5034 0.0000 4 6 2.0650 -1.3051 -0.0006 5 7 2.8167 -1.4361 -1.2558 6 6 1.9004 -1.6500 -2.4054 7 6 2.7864 -2.2905 -3.4953 8 1 3.1623 -1.5259 -4.1752 9 7 2.0295 -3.3020 -4.2369 10 6 1.2786 -2.9398 -5.2959 11 8 1.2292 -1.7763 -5.6347 12 6 0.5004 -3.9805 -6.0591 13 16 -0.4008 -3.1871 -7.4135 14 6 -1.1974 -4.5929 -8.1159 15 1 -1.0429 -5.5718 -7.6865 16 6 -2.0227 -4.4425 -9.2218 17 7 -2.2098 -3.2497 -9.7461 18 14 -2.8667 -5.9331 -9.9669 19 1 -4.1881 -6.1295 -9.3183 20 1 -3.0576 -5.7171 -11.4237 21 1 -2.0255 -7.1377 -9.7512 22 6 3.9520 -2.9487 -2.7286 23 6 3.9646 -4.4588 -2.9750 24 6 5.2847 -2.3288 -3.1534 25 6 3.6720 -2.6506 -1.2400 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.3601 -2.1317 0.0887 29 1 2.7572 -1.3255 0.8412 30 1 1.4980 -0.6985 -2.7531 31 1 1.0922 -2.3263 -2.1265 32 1 2.0688 -4.2325 -3.9658 33 1 1.1876 -4.7227 -6.4653 34 1 -0.2073 -4.4688 -5.3891 35 1 -2.7867 -3.1446 -10.5187 36 1 4.0858 -4.6520 -4.0408 37 1 4.7922 -4.9093 -2.4272 38 1 3.0243 -4.8906 -2.6321 39 1 5.2742 -1.2607 -2.9360 40 1 6.0977 -2.8037 -2.6043 41 1 5.4317 -2.4806 -4.2227 42 1 4.6039 -2.4524 -0.7103 43 1 3.1420 -3.4828 -0.7770 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717578979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:31 Heat of formation + Delta-G solvation = -40.959554 kcal Electronic energy + Delta-G solvation = -24117.292430 eV Core-core repulsion = 20542.119967 eV Total energy + Delta-G solvation = -3575.172463 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.54215 -39.80459 -37.83472 -36.35797 -34.64274 -34.56050 -33.36026 -31.40353 -29.40923 -28.17229 -27.69075 -27.47697 -25.14003 -22.73619 -21.52607 -21.00437 -20.23819 -19.68581 -17.95165 -17.54895 -16.88466 -16.85705 -16.60120 -16.42070 -16.07532 -15.63752 -15.31501 -14.95976 -14.77838 -14.56074 -14.34468 -14.12303 -13.78942 -13.51784 -13.27828 -13.16315 -13.11749 -12.97807 -12.89101 -12.63722 -12.60122 -12.49417 -12.28238 -11.89143 -11.82822 -11.72316 -11.65303 -11.45438 -11.14144 -10.94774 -10.26816 -10.16070 -10.09901 -9.51986 -8.66421 -8.34356 -6.12413 0.91875 1.26800 1.38674 1.42508 1.47126 1.57306 1.60665 2.21971 2.28111 2.99794 3.05129 3.31652 3.37762 3.53602 3.73830 3.87953 3.99050 4.16833 4.22693 4.29633 4.31246 4.33570 4.49639 4.52525 4.66238 4.69990 4.73094 4.78047 4.83793 4.94147 5.02497 5.04628 5.13175 5.18548 5.26408 5.31759 5.40572 5.42018 5.43805 5.79922 5.93963 6.19985 6.48899 7.06914 7.24758 8.74792 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.002644 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.907728 B =10587.457848 C =11617.942418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.075 4.075 3 Cl -0.095 7.095 4 C 0.083 3.917 5 N -0.509 5.509 6 C 0.033 3.967 7 C 0.148 3.852 8 H 0.068 0.932 9 N -0.706 5.706 10 C 0.533 3.467 11 O -0.563 6.563 12 C -0.129 4.129 13 S -0.151 6.151 14 C -0.546 4.546 15 H 0.083 0.917 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 0.998 3.002 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.257 1.257 22 C -0.065 4.065 23 C -0.147 4.147 24 C -0.132 4.132 25 C 0.046 3.954 26 H 0.136 0.864 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.416 0.584 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.271 0.729 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.101 0.899 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.063 -3.099 24.645 28.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.102 4.102 3 Cl -0.067 7.067 4 C -0.045 4.045 5 N -0.233 5.233 6 C -0.096 4.096 7 C 0.042 3.958 8 H 0.087 0.913 9 N -0.363 5.363 10 C 0.319 3.681 11 O -0.441 6.441 12 C -0.280 4.280 13 S 0.076 5.924 14 C -0.693 4.693 15 H 0.101 0.899 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.820 3.180 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.181 1.181 22 C -0.066 4.066 23 C -0.205 4.205 24 C -0.189 4.189 25 C -0.081 4.081 26 H 0.153 0.847 27 H 0.131 0.869 28 H 0.091 0.909 29 H 0.125 0.875 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.257 0.743 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.119 0.881 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.323 -0.469 23.929 27.392 hybrid contribution -1.208 -2.321 -0.316 2.636 sum 12.115 -2.791 23.613 26.686 Atomic orbital electron populations 1.24267 0.93837 1.04596 0.98328 1.23355 0.93766 0.87987 1.05081 1.98370 1.78522 1.32963 1.96884 1.21467 0.97379 0.92004 0.93630 1.65360 1.18159 1.37885 1.01905 1.23357 0.94872 0.99718 0.91695 1.21702 0.91373 0.90287 0.92390 0.91337 1.46093 1.47776 1.12425 1.30041 1.20131 0.78908 0.88698 0.80361 1.90703 1.64031 1.21135 1.68182 1.23372 1.02376 1.01196 1.01097 1.85622 1.58275 1.15556 1.32919 1.23201 1.33410 0.94776 1.17946 0.89865 1.26132 0.96572 1.00236 0.96251 1.70183 1.37095 1.24491 1.23038 0.84957 0.78464 0.77431 0.77145 1.19294 1.20403 1.18116 1.21509 0.94179 0.96673 0.94280 1.21911 1.03316 0.92579 1.02659 1.21803 0.95295 1.00850 1.00982 1.23318 0.98635 0.90937 0.95244 0.84660 0.86871 0.90920 0.87537 0.92498 0.92856 0.74335 0.87233 0.87226 0.92020 0.92220 0.89655 0.91355 0.92785 0.90138 0.93506 0.88055 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 14.04 67.63 0.95 -1.77 16 2 C -0.08 -1.32 5.49 25.49 0.14 -1.18 16 3 Cl -0.10 -1.99 28.99 -2.72 -0.08 -2.06 16 4 C 0.08 1.17 5.13 85.56 0.44 1.61 16 5 N -0.51 -8.87 5.36 -886.07 -4.75 -13.62 16 6 C 0.03 0.75 5.69 86.45 0.49 1.24 16 7 C 0.15 3.47 2.99 45.89 0.14 3.60 16 8 H 0.07 2.09 7.22 -2.39 -0.02 2.07 16 9 N -0.71 -17.51 4.59 -438.30 -2.01 -19.53 16 10 C 0.53 19.48 7.84 87.66 0.69 20.17 16 11 O -0.56 -26.24 15.56 -3.03 -0.05 -26.28 16 12 C -0.13 -5.03 6.16 71.24 0.44 -4.60 16 13 S -0.15 -8.35 20.57 -56.49 -1.16 -9.52 16 14 C -0.55 -30.94 9.50 67.96 0.65 -30.29 16 15 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 16 C 0.01 0.73 5.49 84.86 0.47 1.19 16 17 N -0.91 -56.03 13.22 21.65 0.29 -55.75 16 18 Si 1.00 43.31 29.55 68.60 2.03 45.34 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 C -0.07 -0.98 1.03 -51.29 -0.05 -1.03 16 23 C -0.15 -1.62 7.10 71.98 0.51 -1.11 16 24 C -0.13 -2.02 8.24 71.98 0.59 -1.43 16 25 C 0.05 0.56 5.58 86.45 0.48 1.04 16 26 H 0.14 1.70 7.84 -2.91 -0.02 1.67 16 27 H 0.11 1.79 8.06 -2.91 -0.02 1.76 16 28 H 0.07 0.83 7.53 -2.38 -0.02 0.81 16 29 H 0.11 1.20 8.13 -2.39 -0.02 1.18 16 30 H 0.06 1.68 8.12 -2.39 -0.02 1.66 16 31 H 0.05 1.15 7.74 -2.38 -0.02 1.13 16 32 H 0.42 7.48 5.79 -92.71 -0.54 6.94 16 33 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 34 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 35 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.06 0.79 7.72 -2.39 -0.02 0.78 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.62 6.96 -2.39 -0.02 0.60 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 42 H 0.10 1.01 7.86 -2.39 -0.02 1.00 16 43 H 0.07 0.61 7.69 -2.39 -0.02 0.59 16 Total: -1.00 -75.86 379.08 0.65 -75.21 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.46 Total: 18.75 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 5.93 Total: -12.55 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -6.48 Total: -88.89 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.05 Total: -26.28 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.08 Total: -2.06 kcal Total: -75.86 0.65 -75.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717578979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.249 kcal (2) G-P(sol) polarization free energy of solvation -75.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds