Wall clock time and date at job start Tue Mar 31 2020 16:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36573 * 127.17231 * 2 1 4 4 S 1.76191 * 126.38289 * 359.97438 * 3 2 1 5 5 C 1.81005 * 100.00127 * 180.29053 * 4 3 2 6 6 C 1.50693 * 109.47279 * 179.97438 * 5 4 3 7 7 O 1.21288 * 120.00222 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99878 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00014 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47431 * 180.02562 * 9 8 6 11 11 H 1.08006 * 119.99594 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00204 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99994 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99899 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47221 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47086 * 120.00072 * 14 12 10 17 17 H 1.48502 * 109.47351 * 239.99873 * 14 12 10 18 18 N 1.31443 * 107.22973 * 180.25902 * 3 2 1 19 19 N 1.28505 * 110.08436 * 359.72913 * 18 3 2 20 20 C 1.31263 * 109.96049 * 0.02562 * 19 18 3 21 21 C 1.47841 * 126.46586 * 179.97438 * 20 19 18 22 22 C 1.39580 * 120.14512 * 160.83842 * 21 20 19 23 23 C 1.37950 * 119.85444 * 179.97438 * 22 21 20 24 24 C 1.38366 * 120.14647 * 359.97246 * 23 22 21 25 25 C 1.38361 * 120.28999 * 0.04949 * 24 23 22 26 26 C 1.37957 * 120.14358 * 359.95262 * 25 24 23 27 27 H 1.08992 * 109.47622 * 263.82059 * 1 2 3 28 28 H 1.09003 * 109.46815 * 23.82113 * 1 2 3 29 29 H 1.08998 * 109.46856 * 143.81529 * 1 2 3 30 30 H 1.09001 * 109.46726 * 299.99905 * 5 4 3 31 31 H 1.09000 * 109.46948 * 59.99771 * 5 4 3 32 32 H 0.96996 * 120.00289 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.47178 * 300.01233 * 9 8 6 34 34 H 1.09005 * 109.46900 * 60.00105 * 9 8 6 35 35 H 0.96998 * 119.99991 * 180.02562 * 13 12 10 36 36 H 1.07997 * 120.07026 * 359.70038 * 22 21 20 37 37 H 1.07997 * 119.92930 * 179.97438 * 23 22 21 38 38 H 1.07999 * 119.85411 * 180.02562 * 24 23 22 39 39 H 1.07999 * 119.92412 * 179.97438 * 25 24 23 40 40 H 1.08001 * 120.07092 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2902 1.0882 0.0000 4 16 1.7914 2.7781 -0.0006 5 6 3.4120 3.5842 -0.0093 6 6 3.2291 5.0800 -0.0117 7 8 2.1129 5.5544 -0.0074 8 7 4.3058 5.8906 -0.0175 9 6 4.1280 7.3447 -0.0204 10 6 5.4772 8.0159 -0.0275 11 1 6.3773 7.4188 -0.0300 12 6 5.5627 9.3919 -0.0307 13 7 4.4668 10.1189 -0.0280 14 14 7.2353 10.2238 -0.0387 15 1 8.3020 9.1906 -0.0413 16 1 7.3622 11.0685 -1.2535 17 1 7.3714 11.0736 1.1715 18 7 3.5258 0.6399 -0.0057 19 7 3.5290 -0.6451 -0.0035 20 6 2.2963 -1.0963 0.0032 21 6 1.8798 -2.5148 0.0070 22 6 0.5904 -2.8656 0.4100 23 6 0.2079 -4.1911 0.4108 24 6 1.0992 -5.1717 0.0128 25 6 2.3790 -4.8308 -0.3874 26 6 2.7741 -3.5090 -0.3928 27 1 -0.3634 -0.1106 1.0216 28 1 -0.3633 0.9402 -0.4151 29 1 -0.3633 -0.8294 -0.6067 30 1 3.9701 3.2874 0.8787 31 1 3.9621 3.2844 -0.9013 32 1 5.1985 5.5112 -0.0205 33 1 3.5705 7.6408 -0.9089 34 1 3.5771 7.6451 0.8709 35 1 4.5269 11.0870 -0.0307 36 1 -0.1049 -2.1015 0.7247 37 1 -0.7894 -4.4639 0.7228 38 1 0.7946 -6.2079 0.0148 39 1 3.0700 -5.6010 -0.6966 40 1 3.7733 -3.2441 -0.7058 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006139925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:04 Heat of formation + Delta-G solvation = 67.843880 kcal Electronic energy + Delta-G solvation = -23784.739941 eV Core-core repulsion = 20113.178055 eV Total energy + Delta-G solvation = -3671.561886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.02795 -39.43604 -38.90228 -35.42408 -34.33098 -32.85095 -32.44850 -31.43643 -30.33131 -29.36337 -28.10128 -26.85931 -23.99374 -23.55913 -22.68252 -22.23199 -21.20823 -19.97434 -18.37851 -17.49239 -16.92384 -16.73624 -16.55015 -16.01168 -15.87802 -15.27145 -15.22504 -15.05353 -14.41177 -14.15085 -14.11122 -13.88547 -13.71460 -13.41579 -13.18979 -12.96176 -12.78376 -12.02906 -11.96042 -11.81242 -11.71622 -11.58640 -11.08884 -10.96932 -10.93519 -10.68386 -10.53277 -10.42985 -10.34629 -9.46258 -9.44501 -9.37092 -9.11327 -8.80267 -8.03704 -7.66637 -6.20567 -4.27763 0.37244 0.84812 0.89664 1.60636 1.90983 2.25241 2.57324 3.10422 3.22499 3.29886 3.33060 3.37132 3.77816 3.90881 4.14116 4.32718 4.35590 4.44741 4.58822 4.61508 4.77785 4.90343 4.93113 5.04206 5.12498 5.16443 5.23470 5.28870 5.39379 5.46415 5.55608 5.63292 5.89168 6.00562 6.02033 6.34013 6.43975 7.19514 7.26039 7.43574 7.59086 7.90551 8.35470 8.45288 8.66637 8.91413 9.38747 10.89588 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.036222 B = 0.001850 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.822932 B =15130.613123 C =15851.624653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.461 5.461 3 C 0.151 3.849 4 S 0.083 5.917 5 C -0.143 4.143 6 C 0.517 3.483 7 O -0.544 6.544 8 N -0.700 5.700 9 C 0.249 3.751 10 C -0.545 4.545 11 H 0.065 0.935 12 C 0.064 3.936 13 N -0.885 5.885 14 Si 0.905 3.095 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 N -0.292 5.292 19 N -0.266 5.266 20 C 0.212 3.788 21 C -0.011 4.011 22 C -0.115 4.115 23 C -0.117 4.117 24 C -0.109 4.109 25 C -0.117 4.117 26 C -0.076 4.076 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.395 0.605 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.266 0.734 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.791 -30.376 -0.068 31.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.154 5.154 3 C -0.222 4.222 4 S 0.310 5.690 5 C -0.295 4.295 6 C 0.299 3.701 7 O -0.424 6.424 8 N -0.348 5.348 9 C 0.129 3.871 10 C -0.583 4.583 11 H 0.083 0.917 12 C -0.140 4.140 13 N -0.522 5.522 14 Si 0.732 3.268 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 N -0.137 5.137 19 N -0.107 5.107 20 C -0.054 4.054 21 C -0.013 4.013 22 C -0.135 4.135 23 C -0.135 4.135 24 C -0.128 4.128 25 C -0.135 4.135 26 C -0.096 4.096 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.228 0.772 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.216 -29.228 -0.072 30.962 hybrid contribution 1.173 -0.190 0.037 1.189 sum -9.043 -29.418 -0.035 30.776 Atomic orbital electron populations 1.22393 0.74953 1.05944 1.04443 1.46264 1.08602 1.04681 1.55858 1.27485 0.90193 0.97396 1.07167 1.86178 1.08011 0.82858 1.91921 1.23841 0.99044 0.97409 1.09235 1.19457 0.86044 0.86271 0.78355 1.90709 1.23994 1.76439 1.51240 1.46388 1.07434 1.09638 1.71354 1.19212 0.97687 0.72158 0.98071 1.21253 0.91839 0.91864 1.53370 0.91663 1.24949 0.97291 0.97148 0.94585 1.69980 1.27370 1.06050 1.48810 0.86339 0.83234 0.79447 0.77772 1.19570 1.20768 1.20762 1.74729 1.15472 1.02970 1.20534 1.74241 1.16425 1.03040 1.16956 1.22910 0.86710 0.89026 1.06721 1.17468 0.94675 0.86569 1.02616 1.21416 0.94997 0.97286 0.99777 1.21055 1.00061 0.92272 1.00085 1.21349 0.93747 0.99704 0.97978 1.21163 0.96543 0.95928 0.99816 1.21251 0.99570 0.91815 0.96986 0.89289 0.88162 0.88435 0.85920 0.85942 0.77161 0.95180 0.95170 0.92435 0.85455 0.85343 0.85559 0.85151 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 9.31 59.85 0.56 0.99 16 2 N -0.46 -5.24 3.24 -121.46 -0.39 -5.64 16 3 C 0.15 2.09 8.07 -88.17 -0.71 1.38 16 4 S 0.08 1.15 20.81 -107.50 -2.24 -1.08 16 5 C -0.14 -2.11 5.71 36.00 0.21 -1.90 16 6 C 0.52 9.96 7.85 -10.99 -0.09 9.87 16 7 O -0.54 -12.47 15.86 5.55 0.09 -12.38 16 8 N -0.70 -14.32 5.55 -61.47 -0.34 -14.66 16 9 C 0.25 6.45 5.43 -5.20 -0.03 6.42 16 10 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16 11 H 0.07 1.64 7.60 -52.48 -0.40 1.24 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.88 -25.74 13.29 55.43 0.74 -25.00 16 14 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 18 N -0.29 -4.63 11.59 30.71 0.36 -4.27 16 19 N -0.27 -4.05 12.02 32.59 0.39 -3.66 16 20 C 0.21 2.63 7.69 -153.75 -1.18 1.45 16 21 C -0.01 -0.10 5.87 -104.97 -0.62 -0.72 16 22 C -0.11 -0.80 8.72 -39.19 -0.34 -1.15 16 23 C -0.12 -0.65 10.03 -39.64 -0.40 -1.04 16 24 C -0.11 -0.59 10.04 -39.49 -0.40 -0.99 16 25 C -0.12 -0.74 10.03 -39.64 -0.40 -1.14 16 26 C -0.08 -0.66 9.70 -39.19 -0.38 -1.04 16 27 H 0.09 0.42 7.72 -51.93 -0.40 0.02 16 28 H 0.10 0.62 7.68 -51.93 -0.40 0.22 16 29 H 0.10 0.45 6.64 -51.93 -0.34 0.10 16 30 H 0.12 1.65 8.14 -51.92 -0.42 1.22 16 31 H 0.12 1.64 8.14 -51.92 -0.42 1.22 16 32 H 0.40 6.93 8.32 -40.82 -0.34 6.59 16 33 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.13 0.66 5.04 -52.49 -0.26 0.40 16 37 H 0.13 0.41 8.06 -52.49 -0.42 -0.02 16 38 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 39 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.14 1.21 7.98 -52.49 -0.42 0.79 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -34.81 362.42 -9.81 -44.62 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -4.66 Total: 1.99 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -4.19 Total: -1.09 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.75 Total: -53.23 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.24 Total: -1.08 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.81 -9.81 -44.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006139925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.464 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds