Wall clock time and date at job start Tue Mar 31 2020 16:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36573 * 127.17231 * 2 1 4 4 S 1.76191 * 126.38289 * 359.97438 * 3 2 1 5 5 C 1.81005 * 100.00127 * 180.29053 * 4 3 2 6 6 C 1.50693 * 109.47279 * 179.97438 * 5 4 3 7 7 O 1.21288 * 120.00222 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99878 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00014 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47431 * 180.02562 * 9 8 6 11 11 H 1.08006 * 119.99594 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00204 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99994 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99899 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47221 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47086 * 120.00072 * 14 12 10 17 17 H 1.48502 * 109.47351 * 239.99873 * 14 12 10 18 18 N 1.31443 * 107.22973 * 180.25902 * 3 2 1 19 19 N 1.28505 * 110.08436 * 359.72913 * 18 3 2 20 20 C 1.31263 * 109.96049 * 0.02562 * 19 18 3 21 21 C 1.47841 * 126.46586 * 179.97438 * 20 19 18 22 22 C 1.39580 * 120.14512 * 160.83842 * 21 20 19 23 23 C 1.37950 * 119.85444 * 179.97438 * 22 21 20 24 24 C 1.38366 * 120.14647 * 359.97246 * 23 22 21 25 25 C 1.38361 * 120.28999 * 0.04949 * 24 23 22 26 26 C 1.37957 * 120.14358 * 359.95262 * 25 24 23 27 27 H 1.08992 * 109.47622 * 263.82059 * 1 2 3 28 28 H 1.09003 * 109.46815 * 23.82113 * 1 2 3 29 29 H 1.08998 * 109.46856 * 143.81529 * 1 2 3 30 30 H 1.09001 * 109.46726 * 299.99905 * 5 4 3 31 31 H 1.09000 * 109.46948 * 59.99771 * 5 4 3 32 32 H 0.96996 * 120.00289 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.47178 * 300.01233 * 9 8 6 34 34 H 1.09005 * 109.46900 * 60.00105 * 9 8 6 35 35 H 0.96998 * 119.99991 * 180.02562 * 13 12 10 36 36 H 1.07997 * 120.07026 * 359.70038 * 22 21 20 37 37 H 1.07997 * 119.92930 * 179.97438 * 23 22 21 38 38 H 1.07999 * 119.85411 * 180.02562 * 24 23 22 39 39 H 1.07999 * 119.92412 * 179.97438 * 25 24 23 40 40 H 1.08001 * 120.07092 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2902 1.0882 0.0000 4 16 1.7914 2.7781 -0.0006 5 6 3.4120 3.5842 -0.0093 6 6 3.2291 5.0800 -0.0117 7 8 2.1129 5.5544 -0.0074 8 7 4.3058 5.8906 -0.0175 9 6 4.1280 7.3447 -0.0204 10 6 5.4772 8.0159 -0.0275 11 1 6.3773 7.4188 -0.0300 12 6 5.5627 9.3919 -0.0307 13 7 4.4668 10.1189 -0.0280 14 14 7.2353 10.2238 -0.0387 15 1 8.3020 9.1906 -0.0413 16 1 7.3622 11.0685 -1.2535 17 1 7.3714 11.0736 1.1715 18 7 3.5258 0.6399 -0.0057 19 7 3.5290 -0.6451 -0.0035 20 6 2.2963 -1.0963 0.0032 21 6 1.8798 -2.5148 0.0070 22 6 0.5904 -2.8656 0.4100 23 6 0.2079 -4.1911 0.4108 24 6 1.0992 -5.1717 0.0128 25 6 2.3790 -4.8308 -0.3874 26 6 2.7741 -3.5090 -0.3928 27 1 -0.3634 -0.1106 1.0216 28 1 -0.3633 0.9402 -0.4151 29 1 -0.3633 -0.8294 -0.6067 30 1 3.9701 3.2874 0.8787 31 1 3.9621 3.2844 -0.9013 32 1 5.1985 5.5112 -0.0205 33 1 3.5705 7.6408 -0.9089 34 1 3.5771 7.6451 0.8709 35 1 4.5269 11.0870 -0.0307 36 1 -0.1049 -2.1015 0.7247 37 1 -0.7894 -4.4639 0.7228 38 1 0.7946 -6.2079 0.0148 39 1 3.0700 -5.6010 -0.6966 40 1 3.7733 -3.2441 -0.7058 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006139925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:03 Heat of formation + Delta-G solvation = 45.837261 kcal Electronic energy + Delta-G solvation = -23785.694219 eV Core-core repulsion = 20113.178055 eV Total energy + Delta-G solvation = -3672.516164 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.97533 -40.59495 -39.95271 -36.27671 -36.21856 -34.43733 -33.55648 -31.93445 -31.71109 -30.30818 -28.80897 -28.73857 -24.86443 -24.53410 -24.27081 -22.97378 -21.98497 -21.62332 -19.49883 -18.73763 -17.96924 -17.63868 -17.62622 -17.38793 -17.02980 -16.73579 -16.64675 -16.02188 -15.66289 -15.16409 -14.77373 -14.69512 -14.60813 -14.47855 -14.35636 -14.02724 -13.94580 -13.69287 -13.53267 -12.98325 -12.86189 -12.75780 -12.35710 -12.24716 -12.21608 -11.92207 -11.59825 -11.47997 -11.44606 -11.33266 -11.09094 -10.83511 -9.96194 -9.94655 -9.78009 -8.72474 -8.30316 -6.46308 -0.30404 -0.22511 0.41329 0.74985 0.77335 1.43809 1.44087 1.45004 1.51418 1.57895 1.64374 2.26818 2.46742 2.82911 3.05128 3.07517 3.51096 3.68436 3.75817 3.93912 3.98018 4.08381 4.15754 4.23013 4.25082 4.33975 4.46776 4.49451 4.68478 4.75804 4.86447 5.07315 5.07883 5.22429 5.38095 5.41054 5.44632 5.54094 5.60608 5.61088 5.82051 5.96009 6.62313 6.71429 7.17936 7.32214 7.36160 8.81836 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.036222 B = 0.001850 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.822932 B =15130.613123 C =15851.624653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.457 5.457 3 C 0.141 3.859 4 S 0.088 5.912 5 C -0.132 4.132 6 C 0.519 3.481 7 O -0.582 6.582 8 N -0.696 5.696 9 C 0.266 3.734 10 C -0.558 4.558 11 H 0.084 0.916 12 C 0.006 3.994 13 N -0.928 5.928 14 Si 0.983 3.017 15 H -0.255 1.255 16 H -0.279 1.279 17 H -0.279 1.279 18 N -0.321 5.321 19 N -0.309 5.309 20 C 0.225 3.775 21 C -0.042 4.042 22 C -0.113 4.113 23 C -0.116 4.116 24 C -0.101 4.101 25 C -0.120 4.120 26 C -0.092 4.092 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.121 0.879 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.412 0.588 33 H -0.005 1.005 34 H -0.005 1.005 35 H 0.269 0.731 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 -33.168 0.164 34.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.149 5.149 3 C -0.234 4.234 4 S 0.315 5.685 5 C -0.284 4.284 6 C 0.304 3.696 7 O -0.464 6.464 8 N -0.346 5.346 9 C 0.143 3.857 10 C -0.595 4.595 11 H 0.102 0.898 12 C -0.194 4.194 13 N -0.567 5.567 14 Si 0.806 3.194 15 H -0.179 1.179 16 H -0.204 1.204 17 H -0.204 1.204 18 N -0.166 5.166 19 N -0.150 5.150 20 C -0.042 4.042 21 C -0.044 4.044 22 C -0.133 4.133 23 C -0.133 4.133 24 C -0.120 4.120 25 C -0.138 4.138 26 C -0.113 4.113 27 H 0.130 0.870 28 H 0.122 0.878 29 H 0.139 0.861 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.248 0.752 33 H 0.013 0.987 34 H 0.013 0.987 35 H 0.078 0.922 36 H 0.162 0.838 37 H 0.177 0.823 38 H 0.174 0.826 39 H 0.168 0.832 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.450 -32.075 0.159 33.735 hybrid contribution 1.094 0.467 -0.035 1.190 sum -9.356 -31.608 0.125 32.964 Atomic orbital electron populations 1.22819 0.72290 1.07187 1.06489 1.46512 1.10096 1.03573 1.54764 1.27338 0.90406 0.97640 1.08050 1.86123 1.06877 0.83060 1.92430 1.23640 1.00377 0.93495 1.10875 1.20073 0.84891 0.88078 0.76545 1.90691 1.25481 1.77720 1.52499 1.46090 1.08893 1.07758 1.71831 1.18659 0.96955 0.75310 0.94787 1.21646 0.92452 0.92489 1.52951 0.89842 1.26009 1.01514 0.97996 0.93856 1.70126 1.30138 1.06519 1.49900 0.85133 0.78187 0.78344 0.77690 1.17875 1.20447 1.20435 1.74602 1.16791 1.03634 1.21546 1.74154 1.18389 1.02936 1.19521 1.23442 0.86177 0.90340 1.04216 1.17632 0.96322 0.85089 1.05402 1.21655 0.93997 0.98673 0.98934 1.21460 1.01404 0.91469 0.98998 1.21777 0.92979 1.01290 0.95955 1.21424 0.97649 0.95227 0.99511 1.21299 0.99115 0.92968 0.97890 0.87023 0.87838 0.86112 0.84237 0.84268 0.75209 0.98692 0.98680 0.92202 0.83769 0.82335 0.82632 0.83248 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.59 9.31 127.77 1.19 1.78 16 2 N -0.46 -10.05 3.24 -538.19 -1.74 -11.79 16 3 C 0.14 3.88 8.07 179.49 1.45 5.33 16 4 S 0.09 2.44 20.81 -56.49 -1.18 1.26 16 5 C -0.13 -3.85 5.71 71.23 0.41 -3.45 16 6 C 0.52 20.35 7.85 87.65 0.69 21.03 16 7 O -0.58 -27.51 15.86 -3.05 -0.05 -27.56 16 8 N -0.70 -28.94 5.55 -466.79 -2.59 -31.53 16 9 C 0.27 14.29 5.43 85.63 0.46 14.75 16 10 C -0.56 -30.06 9.28 25.60 0.24 -29.82 16 11 H 0.08 4.10 7.60 -2.91 -0.02 4.07 16 12 C 0.01 0.34 5.46 84.65 0.46 0.80 16 13 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 14 Si 0.98 42.31 29.54 68.60 2.03 44.34 16 15 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 18 N -0.32 -10.32 11.59 -56.75 -0.66 -10.98 16 19 N -0.31 -9.69 12.02 -50.79 -0.61 -10.30 16 20 C 0.23 5.56 7.69 136.21 1.05 6.61 16 21 C -0.04 -0.76 5.87 -20.09 -0.12 -0.88 16 22 C -0.11 -1.29 8.72 22.53 0.20 -1.09 16 23 C -0.12 -0.84 10.03 22.23 0.22 -0.62 16 24 C -0.10 -0.74 10.04 22.33 0.22 -0.51 16 25 C -0.12 -1.28 10.03 22.23 0.22 -1.06 16 26 C -0.09 -1.56 9.70 22.53 0.22 -1.34 16 27 H 0.11 0.77 7.72 -2.39 -0.02 0.75 16 28 H 0.10 1.13 7.68 -2.39 -0.02 1.11 16 29 H 0.12 0.79 6.64 -2.39 -0.02 0.77 16 30 H 0.14 3.64 8.14 -2.39 -0.02 3.62 16 31 H 0.14 3.64 8.14 -2.40 -0.02 3.62 16 32 H 0.41 14.26 8.32 -92.71 -0.77 13.49 16 33 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.00 -0.29 8.14 -2.38 -0.02 -0.31 16 35 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.14 1.03 5.04 -2.91 -0.01 1.02 16 37 H 0.16 0.22 8.06 -2.91 -0.02 0.19 16 38 H 0.16 0.23 8.06 -2.91 -0.02 0.21 16 39 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 40 H 0.12 2.30 7.98 -2.91 -0.02 2.28 16 Total: -1.00 -78.93 362.42 2.72 -76.22 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.32 Total: 13.87 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.91 Total: 11.53 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -5.31 Total: -119.67 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.05 Total: -27.56 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.18 Total: 1.26 kcal Total: -78.93 2.72 -76.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006139925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.052 kcal (2) G-P(sol) polarization free energy of solvation -78.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds