Wall clock time and date at job start Tue Mar 31 2020 16:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46907 * 110.99704 * 2 1 4 4 C 1.50706 * 109.47048 * 293.95057 * 3 2 1 5 5 H 1.07997 * 119.99838 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99369 * 180.02562 * 4 3 2 7 7 N 1.31524 * 119.99467 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00667 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47092 * 89.99726 * 8 6 4 10 10 H 1.48499 * 109.47208 * 209.99966 * 8 6 4 11 11 H 1.48505 * 109.46702 * 330.00288 * 8 6 4 12 12 C 1.46894 * 111.00197 * 123.95125 * 2 1 3 13 13 C 1.50709 * 109.46726 * 66.05041 * 12 2 1 14 14 O 1.21288 * 120.00182 * 359.97438 * 13 12 2 15 15 N 1.34774 * 119.99640 * 180.02562 * 13 12 2 16 16 C 1.40117 * 119.99668 * 185.27253 * 15 13 12 17 17 C 1.38846 * 120.01270 * 213.58974 * 16 15 13 18 18 C 1.38093 * 119.98398 * 180.24990 * 17 16 15 19 19 C 1.38716 * 120.01234 * 359.45679 * 18 17 16 20 20 O 1.35972 * 119.98340 * 180.29120 * 19 18 17 21 21 C 1.42903 * 116.99613 * 179.97438 * 20 19 18 22 22 F 1.39894 * 109.47433 * 60.00439 * 21 20 19 23 23 F 1.39904 * 109.46640 * 180.02562 * 21 20 19 24 24 F 1.39905 * 109.47089 * 299.99743 * 21 20 19 25 25 C 1.38721 * 120.03325 * 0.27006 * 19 18 17 26 26 C 1.38095 * 120.01101 * 0.02562 * 25 19 18 27 27 H 1.08996 * 109.47096 * 296.04829 * 1 2 3 28 28 H 1.09001 * 109.46849 * 56.04926 * 1 2 3 29 29 H 1.08997 * 109.46823 * 176.04023 * 1 2 3 30 30 H 1.08991 * 109.47036 * 53.95470 * 3 2 1 31 31 H 1.09006 * 109.46618 * 173.95714 * 3 2 1 32 32 H 0.96999 * 119.99952 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47443 * 306.05067 * 12 2 1 34 34 H 1.09001 * 109.47342 * 186.04222 * 12 2 1 35 35 H 0.96999 * 120.00170 * 5.26797 * 15 13 12 36 36 H 1.08000 * 120.01014 * 0.02562 * 17 16 15 37 37 H 1.08004 * 119.99346 * 179.72640 * 18 17 16 38 38 H 1.07998 * 119.99552 * 180.02562 * 25 19 18 39 39 H 1.08000 * 120.00636 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0277 3.3492 -1.5289 7 7 1.7144 3.9390 -2.6619 8 14 3.0020 4.2755 -0.2319 9 1 4.4541 4.0619 -0.4573 10 1 2.6948 5.7254 -0.3238 11 1 2.6315 3.7753 1.1164 12 6 1.9955 -0.7659 1.1376 13 6 1.6370 -2.2204 0.9728 14 8 1.0048 -2.5831 0.0033 15 7 2.0182 -3.1179 1.9032 16 6 1.7823 -4.4836 1.6971 17 6 1.4977 -5.3098 2.7761 18 6 1.2704 -6.6567 2.5730 19 6 1.3153 -7.1821 1.2899 20 8 1.0856 -8.5073 1.0899 21 6 1.1471 -8.9802 -0.2572 22 9 2.4220 -8.7368 -0.7792 23 9 0.8876 -10.3547 -0.2811 24 9 0.1912 -8.3121 -1.0301 25 6 1.5940 -6.3562 0.2108 26 6 1.8274 -5.0103 0.4133 27 1 -0.3633 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0252 -0.0710 30 1 1.5611 1.9274 0.8309 31 1 3.0798 1.3445 0.1082 32 1 1.9896 4.8549 -2.8242 33 1 1.5611 -0.3872 2.0628 34 1 3.0798 -0.6611 1.1756 35 1 2.4558 -2.8184 2.7154 36 1 1.4577 -4.8999 3.7745 37 1 1.0534 -7.3003 3.4127 38 1 1.6283 -6.7658 -0.7879 39 1 2.0440 -4.3673 -0.4270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008238136.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:48 Heat of formation + Delta-G solvation = -179.891842 kcal Electronic energy + Delta-G solvation = -27787.146131 eV Core-core repulsion = 23087.939256 eV Total energy + Delta-G solvation = -4699.206875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.75256 -48.48714 -48.33583 -40.90721 -39.87691 -37.92048 -36.17717 -34.55200 -32.49820 -31.45542 -30.05282 -28.43796 -27.29079 -26.13333 -24.27320 -23.55151 -22.67320 -20.77933 -20.17640 -20.02220 -19.45846 -19.37386 -17.92377 -17.16281 -16.95119 -16.62865 -15.74209 -15.51573 -15.32980 -15.11584 -14.99636 -14.80907 -14.74395 -14.50802 -14.46315 -14.42532 -14.35713 -13.96639 -13.84964 -13.63163 -13.47378 -12.91222 -12.67996 -12.59898 -12.18588 -11.84202 -11.54110 -11.22721 -11.01301 -10.66010 -10.58876 -10.35314 -10.02741 -9.60968 -9.39161 -9.25642 -8.60586 -8.19724 -7.47862 -6.07688 -4.05740 0.81310 0.96937 1.16612 2.52834 2.59579 2.86033 3.24394 3.31443 3.32377 3.35380 3.45414 3.69072 4.37315 4.37681 4.39447 4.69260 4.71449 4.81560 4.91575 5.14392 5.23482 5.35749 5.45933 5.52950 5.59719 5.88288 5.98284 6.03027 6.13563 6.21454 6.26889 6.66608 6.71465 6.80379 6.95030 7.20746 7.50187 7.79322 7.90330 8.18242 8.60665 9.02516 9.52526 11.05404 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.025997 B = 0.002149 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.790488 B =13027.105373 C =13613.722662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.514 5.514 3 C 0.163 3.837 4 C -0.510 4.510 5 H 0.083 0.917 6 C 0.068 3.932 7 N -0.898 5.898 8 Si 0.876 3.124 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.036 3.964 13 C 0.514 3.486 14 O -0.492 6.492 15 N -0.682 5.682 16 C 0.145 3.855 17 C -0.116 4.116 18 C -0.102 4.102 19 C 0.078 3.922 20 O -0.312 6.312 21 C 0.603 3.397 22 F -0.165 7.165 23 F -0.134 7.134 24 F -0.164 7.164 25 C -0.166 4.166 26 C -0.081 4.081 27 H 0.007 0.993 28 H 0.082 0.918 29 H 0.066 0.934 30 H -0.009 1.009 31 H 0.025 0.975 32 H 0.264 0.736 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.411 0.589 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.131 -25.204 13.621 28.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.238 5.238 3 C 0.037 3.963 4 C -0.548 4.548 5 H 0.101 0.899 6 C -0.134 4.134 7 N -0.537 5.537 8 Si 0.703 3.297 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.096 4.096 13 C 0.302 3.698 14 O -0.363 6.363 15 N -0.330 5.330 16 C 0.050 3.950 17 C -0.137 4.137 18 C -0.122 4.122 19 C 0.035 3.965 20 O -0.232 6.232 21 C 0.512 3.488 22 F -0.147 7.147 23 F -0.116 7.116 24 F -0.146 7.146 25 C -0.185 4.185 26 C -0.101 4.101 27 H 0.025 0.975 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.009 0.991 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.247 0.753 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.811 -25.553 12.423 28.425 hybrid contribution 0.537 1.040 1.421 1.841 sum 1.348 -24.513 13.843 28.184 Atomic orbital electron populations 1.22423 0.87203 1.01625 1.00513 1.61709 1.08440 1.16144 1.37537 1.20248 0.94882 0.83449 0.97735 1.21001 1.35784 0.97224 1.00784 0.89925 1.24906 0.95833 0.97306 0.95324 1.69896 1.46704 1.13301 1.23818 0.86862 0.80879 0.79404 0.82571 1.20113 1.21154 1.19335 1.21995 1.02297 0.89770 0.95569 1.21216 0.78240 0.88407 0.81979 1.90697 1.36229 1.80178 1.29224 1.43759 1.61295 1.03994 1.23908 1.17800 0.99455 0.83825 0.93960 1.20735 1.01705 0.92420 0.98792 1.20126 1.03240 0.94868 0.93918 1.18635 1.03162 0.79255 0.95404 1.86391 1.86947 1.25885 1.23981 1.19356 0.74801 0.76090 0.78508 1.93306 1.40464 1.94008 1.86932 1.93302 1.93967 1.28500 1.95782 1.93325 1.64813 1.80490 1.75925 1.21429 1.04302 0.94728 0.98023 1.21073 0.97899 0.93925 0.97229 0.97456 0.89954 0.91492 0.99148 0.95707 0.92598 0.92568 0.87930 0.75301 0.84224 0.84145 0.84662 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.03 60.07 0.54 1.15 16 2 N -0.51 -10.65 4.49 -245.81 -1.10 -11.75 16 3 C 0.16 3.81 3.79 -4.97 -0.02 3.79 16 4 C -0.51 -14.37 9.01 -34.44 -0.31 -14.68 16 5 H 0.08 2.58 7.37 -52.49 -0.39 2.19 16 6 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 7 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 8 Si 0.88 20.88 27.47 -169.99 -4.67 16.22 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 12 C 0.04 0.54 5.45 -4.97 -0.03 0.51 16 13 C 0.51 7.38 7.29 -10.98 -0.08 7.30 16 14 O -0.49 -8.95 12.00 5.55 0.07 -8.88 16 15 N -0.68 -6.96 5.35 -9.83 -0.05 -7.01 16 16 C 0.14 1.56 6.28 -83.62 -0.53 1.03 16 17 C -0.12 -0.95 9.96 -39.41 -0.39 -1.35 16 18 C -0.10 -0.87 9.98 -39.46 -0.39 -1.26 16 19 C 0.08 0.80 6.48 -39.23 -0.25 0.55 16 20 O -0.31 -3.07 10.38 -19.65 -0.20 -3.28 16 21 C 0.60 5.56 3.42 101.05 0.35 5.91 16 22 F -0.17 -1.54 15.56 2.25 0.04 -1.51 16 23 F -0.13 -1.15 17.53 2.25 0.04 -1.11 16 24 F -0.16 -1.62 15.56 2.25 0.04 -1.59 16 25 C -0.17 -1.87 8.25 -39.46 -0.33 -2.19 16 26 C -0.08 -1.01 8.65 -39.41 -0.34 -1.35 16 27 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.08 1.84 6.76 -51.93 -0.35 1.49 16 29 H 0.07 1.30 5.88 -51.93 -0.31 0.99 16 30 H -0.01 -0.21 7.18 -51.93 -0.37 -0.59 16 31 H 0.02 0.57 7.36 -51.93 -0.38 0.18 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.10 1.36 7.93 -51.93 -0.41 0.94 16 35 H 0.41 2.66 8.82 -40.82 -0.36 2.30 16 36 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 38 H 0.14 1.45 5.09 -52.49 -0.27 1.18 16 39 H 0.15 2.12 6.41 -52.49 -0.34 1.78 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -32.98 339.60 -5.87 -38.85 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -4.03 Total: 0.28 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.88 Total: 1.26 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.38 Total: -45.36 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.14 Total: -12.16 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.11 Total: -4.21 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.98 -5.87 -38.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008238136.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.038 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds