Wall clock time and date at job start Tue Mar 31 2020 16:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46907 * 110.99704 * 2 1 4 4 C 1.50706 * 109.47048 * 293.95057 * 3 2 1 5 5 H 1.07997 * 119.99838 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99369 * 180.02562 * 4 3 2 7 7 N 1.31524 * 119.99467 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00667 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47092 * 89.99726 * 8 6 4 10 10 H 1.48499 * 109.47208 * 209.99966 * 8 6 4 11 11 H 1.48505 * 109.46702 * 330.00288 * 8 6 4 12 12 C 1.46894 * 111.00197 * 123.95125 * 2 1 3 13 13 C 1.50709 * 109.46726 * 66.05041 * 12 2 1 14 14 O 1.21288 * 120.00182 * 359.97438 * 13 12 2 15 15 N 1.34774 * 119.99640 * 180.02562 * 13 12 2 16 16 C 1.40117 * 119.99668 * 185.27253 * 15 13 12 17 17 C 1.38846 * 120.01270 * 213.58974 * 16 15 13 18 18 C 1.38093 * 119.98398 * 180.24990 * 17 16 15 19 19 C 1.38716 * 120.01234 * 359.45679 * 18 17 16 20 20 O 1.35972 * 119.98340 * 180.29120 * 19 18 17 21 21 C 1.42903 * 116.99613 * 179.97438 * 20 19 18 22 22 F 1.39894 * 109.47433 * 60.00439 * 21 20 19 23 23 F 1.39904 * 109.46640 * 180.02562 * 21 20 19 24 24 F 1.39905 * 109.47089 * 299.99743 * 21 20 19 25 25 C 1.38721 * 120.03325 * 0.27006 * 19 18 17 26 26 C 1.38095 * 120.01101 * 0.02562 * 25 19 18 27 27 H 1.08996 * 109.47096 * 296.04829 * 1 2 3 28 28 H 1.09001 * 109.46849 * 56.04926 * 1 2 3 29 29 H 1.08997 * 109.46823 * 176.04023 * 1 2 3 30 30 H 1.08991 * 109.47036 * 53.95470 * 3 2 1 31 31 H 1.09006 * 109.46618 * 173.95714 * 3 2 1 32 32 H 0.96999 * 119.99952 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47443 * 306.05067 * 12 2 1 34 34 H 1.09001 * 109.47342 * 186.04222 * 12 2 1 35 35 H 0.96999 * 120.00170 * 5.26797 * 15 13 12 36 36 H 1.08000 * 120.01014 * 0.02562 * 17 16 15 37 37 H 1.08004 * 119.99346 * 179.72640 * 18 17 16 38 38 H 1.07998 * 119.99552 * 180.02562 * 25 19 18 39 39 H 1.08000 * 120.00636 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0277 3.3492 -1.5289 7 7 1.7144 3.9390 -2.6619 8 14 3.0020 4.2755 -0.2319 9 1 4.4541 4.0619 -0.4573 10 1 2.6948 5.7254 -0.3238 11 1 2.6315 3.7753 1.1164 12 6 1.9955 -0.7659 1.1376 13 6 1.6370 -2.2204 0.9728 14 8 1.0048 -2.5831 0.0033 15 7 2.0182 -3.1179 1.9032 16 6 1.7823 -4.4836 1.6971 17 6 1.4977 -5.3098 2.7761 18 6 1.2704 -6.6567 2.5730 19 6 1.3153 -7.1821 1.2899 20 8 1.0856 -8.5073 1.0899 21 6 1.1471 -8.9802 -0.2572 22 9 2.4220 -8.7368 -0.7792 23 9 0.8876 -10.3547 -0.2811 24 9 0.1912 -8.3121 -1.0301 25 6 1.5940 -6.3562 0.2108 26 6 1.8274 -5.0103 0.4133 27 1 -0.3633 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0252 -0.0710 30 1 1.5611 1.9274 0.8309 31 1 3.0798 1.3445 0.1082 32 1 1.9896 4.8549 -2.8242 33 1 1.5611 -0.3872 2.0628 34 1 3.0798 -0.6611 1.1756 35 1 2.4558 -2.8184 2.7154 36 1 1.4577 -4.8999 3.7745 37 1 1.0534 -7.3003 3.4127 38 1 1.6283 -6.7658 -0.7879 39 1 2.0440 -4.3673 -0.4270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008238136.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:47 Heat of formation + Delta-G solvation = -204.348151 kcal Electronic energy + Delta-G solvation = -27788.206636 eV Core-core repulsion = 23087.939256 eV Total energy + Delta-G solvation = -4700.267380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.50509 -49.21993 -49.10736 -41.79528 -40.81585 -38.88525 -37.64032 -35.52969 -34.60011 -32.22046 -31.17105 -29.99811 -28.68955 -26.98353 -25.88089 -24.40748 -23.63301 -22.28127 -21.37395 -20.80576 -20.21557 -20.16217 -19.09201 -18.64601 -18.15482 -17.62166 -16.80390 -16.45275 -16.30123 -16.22583 -15.93376 -15.88346 -15.75141 -15.56629 -15.50761 -15.46778 -15.25389 -15.21054 -15.00963 -14.49020 -14.38855 -14.31377 -13.83591 -13.72228 -13.59597 -13.36140 -12.86098 -12.62995 -12.41131 -12.37506 -12.20351 -11.87396 -11.52093 -11.28606 -10.76487 -10.73518 -10.14781 -9.07275 -8.98590 -8.25697 -6.30726 0.01142 0.20012 0.41584 1.38281 1.41375 1.51501 1.55231 1.77688 1.92603 2.37591 2.56563 2.71499 2.93193 3.07298 3.28015 3.57019 3.63252 3.80050 4.01103 4.21952 4.29523 4.36376 4.40964 4.52499 4.60781 4.61916 4.87349 4.91698 5.02657 5.07420 5.18907 5.21261 5.28247 5.44217 5.52874 5.88610 5.94171 6.23648 6.43136 6.66154 6.76441 7.18098 7.32653 8.91553 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.025997 B = 0.002149 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.790488 B =13027.105373 C =13613.722662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.543 5.543 3 C 0.173 3.827 4 C -0.521 4.521 5 H 0.028 0.972 6 C 0.001 3.999 7 N -0.953 5.953 8 Si 0.956 3.044 9 H -0.263 1.263 10 H -0.286 1.286 11 H -0.239 1.239 12 C 0.035 3.965 13 C 0.516 3.484 14 O -0.541 6.541 15 N -0.659 5.659 16 C 0.129 3.871 17 C -0.096 4.096 18 C -0.095 4.095 19 C 0.070 3.930 20 O -0.310 6.310 21 C 0.606 3.394 22 F -0.167 7.167 23 F -0.129 7.129 24 F -0.170 7.170 25 C -0.178 4.178 26 C -0.104 4.104 27 H 0.026 0.974 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.001 0.999 31 H 0.041 0.959 32 H 0.266 0.734 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.432 0.568 36 H 0.181 0.819 37 H 0.173 0.827 38 H 0.130 0.870 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.390 -25.946 18.205 31.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.268 5.268 3 C 0.047 3.953 4 C -0.560 4.560 5 H 0.046 0.954 6 C -0.196 4.196 7 N -0.594 5.594 8 Si 0.779 3.221 9 H -0.188 1.188 10 H -0.212 1.212 11 H -0.163 1.163 12 C -0.096 4.096 13 C 0.304 3.696 14 O -0.416 6.416 15 N -0.307 5.307 16 C 0.034 3.966 17 C -0.115 4.115 18 C -0.114 4.114 19 C 0.027 3.973 20 O -0.231 6.231 21 C 0.515 3.485 22 F -0.149 7.149 23 F -0.110 7.110 24 F -0.152 7.152 25 C -0.198 4.198 26 C -0.124 4.124 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.019 0.981 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.144 0.856 35 H 0.273 0.727 36 H 0.198 0.802 37 H 0.190 0.810 38 H 0.147 0.853 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.090 -26.345 17.067 31.460 hybrid contribution 0.093 1.114 -0.057 1.119 sum 2.183 -25.232 17.010 30.508 Atomic orbital electron populations 1.22225 0.87463 1.01271 0.99651 1.61462 1.08541 1.15215 1.41555 1.20005 0.95704 0.84708 0.94908 1.21284 1.35021 0.97644 1.02013 0.95379 1.25992 0.97142 0.98404 0.98019 1.70087 1.48680 1.13918 1.26707 0.85589 0.79177 0.77251 0.80111 1.18800 1.21212 1.16263 1.22106 1.03628 0.89266 0.94612 1.21116 0.77791 0.88727 0.81918 1.90699 1.38724 1.80804 1.31362 1.43396 1.60298 1.03341 1.23679 1.17952 1.00467 0.84093 0.94071 1.21121 0.99072 0.91774 0.99583 1.20583 1.01550 0.95387 0.93880 1.18882 1.03212 0.79235 0.95968 1.86390 1.86934 1.25718 1.24023 1.19313 0.74603 0.76182 0.78393 1.93303 1.40556 1.94049 1.86964 1.93313 1.93923 1.28042 1.95753 1.93315 1.65053 1.80691 1.76110 1.21392 1.05236 0.94660 0.98476 1.20929 0.99819 0.94150 0.97537 0.95521 0.93924 0.91085 0.98144 0.94096 0.92472 0.89175 0.85612 0.72747 0.80175 0.80982 0.85252 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.71 9.03 127.69 1.15 2.86 16 2 N -0.54 -22.20 4.49 -931.62 -4.18 -26.39 16 3 C 0.17 7.89 3.79 85.56 0.32 8.21 16 4 C -0.52 -30.32 9.01 25.60 0.23 -30.09 16 5 H 0.03 1.88 7.37 -2.91 -0.02 1.86 16 6 C 0.00 0.06 5.47 84.65 0.46 0.52 16 7 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 8 Si 0.96 42.38 27.47 68.60 1.88 44.26 16 9 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 12 C 0.03 0.94 5.45 85.56 0.47 1.41 16 13 C 0.52 14.05 7.29 87.66 0.64 14.69 16 14 O -0.54 -20.01 12.00 -3.05 -0.04 -20.05 16 15 N -0.66 -11.57 5.35 -303.39 -1.62 -13.19 16 16 C 0.13 2.50 6.28 38.11 0.24 2.74 16 17 C -0.10 -1.18 9.96 22.38 0.22 -0.95 16 18 C -0.10 -1.27 9.98 22.35 0.22 -1.04 16 19 C 0.07 1.32 6.48 22.50 0.15 1.47 16 20 O -0.31 -5.68 10.38 -93.24 -0.97 -6.65 16 21 C 0.61 10.92 3.42 113.37 0.39 11.31 16 22 F -0.17 -3.11 15.56 44.97 0.70 -2.41 16 23 F -0.13 -2.11 17.53 44.97 0.79 -1.33 16 24 F -0.17 -3.42 15.56 44.97 0.70 -2.72 16 25 C -0.18 -4.06 8.25 22.35 0.18 -3.87 16 26 C -0.10 -2.61 8.65 22.38 0.19 -2.42 16 27 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.04 2.02 6.76 -2.39 -0.02 2.01 16 29 H 0.07 2.82 5.88 -2.39 -0.01 2.80 16 30 H 0.00 0.04 7.18 -2.39 -0.02 0.02 16 31 H 0.04 1.74 7.36 -2.38 -0.02 1.72 16 32 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 33 H 0.09 1.91 8.12 -2.39 -0.02 1.89 16 34 H 0.13 2.83 7.93 -2.39 -0.02 2.82 16 35 H 0.43 3.67 8.82 -92.71 -0.82 2.85 16 36 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 37 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 38 H 0.13 2.95 5.09 -2.91 -0.01 2.94 16 39 H 0.12 3.68 6.41 -2.91 -0.02 3.66 16 Total: -1.00 -77.04 339.60 2.69 -74.35 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.25 Total: 9.20 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 4.87 Total: 4.83 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -5.51 Total: -99.50 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -1.00 Total: -26.70 kcal Atomic # 9 Polarization: -8.64 SS G_CDS: 2.19 Total: -6.46 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.88 Total: 44.26 kcal Total: -77.04 2.69 -74.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008238136.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.994 kcal (2) G-P(sol) polarization free energy of solvation -77.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds