Wall clock time and date at job start Tue Mar 31 2020 16:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47042 * 2 1 4 4 C 1.36758 * 127.14018 * 265.17448 * 3 2 1 5 5 N 1.30298 * 107.31500 * 180.26443 * 4 3 2 6 6 N 1.28527 * 110.07674 * 359.73553 * 5 4 3 7 7 C 1.31276 * 109.86040 * 0.02562 * 6 5 4 8 8 S 1.76204 * 126.48744 * 179.97438 * 7 6 5 9 9 C 1.81000 * 99.99619 * 5.04147 * 8 7 6 10 10 C 1.50702 * 109.46789 * 184.96551 * 9 8 7 11 11 O 1.21276 * 120.00312 * 354.95728 * 10 9 8 12 12 N 1.34779 * 119.99975 * 174.96015 * 10 9 8 13 13 C 1.37142 * 119.99908 * 3.37787 * 12 10 9 14 14 H 1.08001 * 120.00029 * 305.55304 * 13 12 10 15 15 C 1.38891 * 120.00221 * 125.54749 * 13 12 10 16 16 N 1.31419 * 119.99974 * 181.40695 * 15 13 12 17 17 Si 1.86802 * 119.99833 * 1.40862 * 15 13 12 18 18 H 1.48499 * 109.47191 * 95.25370 * 17 15 13 19 19 H 1.48502 * 109.46953 * 215.25451 * 17 15 13 20 20 H 1.48502 * 109.46986 * 335.24966 * 17 15 13 21 21 C 1.39789 * 120.00188 * 183.37255 * 12 10 9 22 22 C 1.38957 * 120.07572 * 171.67889 * 21 12 10 23 23 C 1.38089 * 119.91786 * 179.97438 * 22 21 12 24 24 C 1.38307 * 120.07913 * 359.97438 * 23 22 21 25 25 C 1.38310 * 120.15401 * 0.02562 * 24 23 22 26 26 C 1.38079 * 120.08114 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47480 * 300.00270 * 1 2 3 28 28 H 1.09003 * 109.47050 * 60.00253 * 1 2 3 29 29 H 1.09002 * 109.47005 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47028 * 239.99883 * 2 1 3 31 31 H 1.09003 * 109.47050 * 119.99747 * 2 1 3 32 32 H 1.07997 * 126.34250 * 0.02562 * 4 3 2 33 33 H 1.09002 * 109.47026 * 64.96915 * 9 8 7 34 34 H 1.08996 * 109.47650 * 304.96296 * 9 8 7 35 35 H 0.97002 * 119.99811 * 180.02562 * 16 15 13 36 36 H 1.07996 * 120.04055 * 359.70402 * 22 21 12 37 37 H 1.08004 * 119.95917 * 179.97438 * 23 22 21 38 38 H 1.08000 * 119.92290 * 179.97438 * 24 23 22 39 39 H 1.07997 * 119.95789 * 179.97438 * 25 24 23 40 40 H 1.08002 * 120.03991 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3800 2.1292 -1.0863 5 7 2.7589 3.2953 -0.6455 6 7 2.6570 3.3373 0.6350 7 6 2.2041 2.1900 1.0843 8 16 1.9003 1.7705 2.7685 9 6 2.2348 3.3660 3.5549 10 6 2.1519 3.2153 5.0521 11 8 1.8031 2.1598 5.5369 12 7 2.4653 4.2535 5.8523 13 6 2.7926 5.4673 5.3043 14 1 3.5826 5.5332 4.5708 15 6 2.1080 6.6118 5.6923 16 7 2.4029 7.7705 5.1469 17 14 0.7682 6.5040 6.9895 18 1 1.3404 6.8301 8.3204 19 1 -0.3131 7.4690 6.6656 20 1 0.2121 5.1273 7.0135 21 6 2.4566 4.0932 7.2410 22 6 2.9434 5.1033 8.0617 23 6 2.9328 4.9417 9.4330 24 6 2.4379 3.7764 9.9899 25 6 1.9525 2.7690 9.1760 26 6 1.9610 2.9233 7.8038 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.3594 1.8108 -2.1181 33 1 1.4978 4.0968 3.2220 34 1 3.2332 3.7052 3.2787 35 1 1.9251 8.5699 5.4181 36 1 3.3337 6.0118 7.6273 37 1 3.3114 5.7262 10.0715 38 1 2.4311 3.6525 11.0627 39 1 1.5672 1.8602 9.6141 40 1 1.5822 2.1360 7.1689 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019357833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:41 Heat of formation + Delta-G solvation = 85.794858 kcal Electronic energy + Delta-G solvation = -25591.892175 eV Core-core repulsion = 21921.108702 eV Total energy + Delta-G solvation = -3670.783473 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.87551 -41.90794 -39.27980 -37.04522 -36.70057 -34.24434 -32.32799 -31.77144 -31.58923 -31.51275 -29.66993 -27.23365 -25.37752 -23.85587 -23.54793 -23.22413 -22.81626 -21.34856 -20.04216 -18.93005 -18.27925 -17.78121 -17.41000 -17.15516 -17.04394 -16.64481 -16.25889 -15.91213 -15.40226 -15.31785 -15.04309 -14.85905 -14.63087 -14.50483 -14.11248 -14.09923 -14.06929 -13.61346 -13.32137 -13.20729 -12.68860 -12.54394 -12.46136 -12.38720 -12.09184 -11.97239 -11.91013 -11.39135 -11.32563 -11.26413 -11.07209 -10.92835 -10.33517 -9.67090 -8.92569 -8.76536 -8.56083 -6.58618 -0.10781 0.35432 0.52264 0.62127 0.82759 1.22530 1.27974 1.37557 1.62376 1.69386 1.77580 2.10164 2.35525 2.70217 3.05906 3.52488 3.62928 3.76546 4.01012 4.02906 4.14686 4.17842 4.18467 4.34195 4.40699 4.44878 4.48724 4.65898 4.70796 4.75781 4.83021 4.86131 5.05642 5.20878 5.22087 5.44674 5.54831 5.64095 5.70860 5.84497 5.89781 5.98179 6.33618 6.73271 7.05559 7.35279 7.57451 8.46191 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.003673 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.154252 B = 7620.530661 C = 8701.828224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 N -0.459 5.459 4 C 0.179 3.821 5 N -0.342 5.342 6 N -0.337 5.337 7 C 0.135 3.865 8 S 0.085 5.915 9 C -0.107 4.107 10 C 0.512 3.488 11 O -0.553 6.553 12 N -0.411 5.411 13 C -0.366 4.366 14 H 0.086 0.914 15 C 0.056 3.944 16 N -0.887 5.887 17 Si 0.920 3.080 18 H -0.235 1.235 19 H -0.291 1.291 20 H -0.273 1.273 21 C 0.127 3.873 22 C -0.180 4.180 23 C -0.106 4.106 24 C -0.154 4.154 25 C -0.103 4.103 26 C -0.200 4.200 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.143 0.857 31 H 0.098 0.902 32 H 0.274 0.726 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.285 0.715 36 H 0.118 0.882 37 H 0.143 0.857 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.853 -16.369 -4.966 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.027 4.027 3 N -0.154 5.154 4 C -0.111 4.111 5 N -0.181 5.181 6 N -0.181 5.181 7 C -0.242 4.242 8 S 0.311 5.689 9 C -0.258 4.258 10 C 0.302 3.698 11 O -0.437 6.437 12 N -0.121 5.121 13 C -0.493 4.493 14 H 0.104 0.896 15 C -0.151 4.151 16 N -0.521 5.521 17 Si 0.746 3.254 18 H -0.158 1.158 19 H -0.219 1.219 20 H -0.198 1.198 21 C 0.032 3.968 22 C -0.201 4.201 23 C -0.124 4.124 24 C -0.173 4.173 25 C -0.121 4.121 26 C -0.219 4.219 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.161 0.839 31 H 0.116 0.884 32 H 0.289 0.711 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.136 0.864 37 H 0.161 0.839 38 H 0.173 0.827 39 H 0.168 0.832 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.843 -16.257 -4.372 17.268 hybrid contribution -0.313 0.979 -0.436 1.117 sum -4.156 -15.278 -4.808 16.547 Atomic orbital electron populations 1.22177 0.92941 1.04968 1.02616 1.22416 0.96645 0.76289 1.07365 1.47051 1.49130 1.14965 1.04216 1.27651 0.99345 0.87751 0.96391 1.73846 1.20805 1.20388 1.03028 1.74712 1.20074 1.18883 1.04456 1.27267 1.06609 0.92240 0.98101 1.85401 1.85692 1.12271 0.85487 1.23296 1.08523 0.99522 0.94500 1.20164 0.77743 0.83646 0.88235 1.90246 1.49759 1.28852 1.74892 1.41300 1.57300 1.10764 1.02709 1.18815 1.20924 0.82883 1.26698 0.89592 1.25904 0.97196 0.94599 0.97427 1.69715 1.41340 0.99738 1.41331 0.86245 0.79333 0.78198 0.81664 1.15837 1.21879 1.19814 1.18725 0.98348 0.95754 0.83968 1.21050 1.04473 0.99780 0.94757 1.21250 0.99114 0.98865 0.93184 1.21439 1.01216 0.93493 1.01115 1.21457 0.98424 0.99907 0.92327 1.22777 1.02915 0.98717 0.97495 0.93655 0.91450 0.87390 0.83939 0.88371 0.71080 0.86825 0.86857 0.90502 0.86400 0.83888 0.82708 0.83196 0.81434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 10.24 71.98 0.74 -1.16 16 2 C 0.09 1.10 6.74 86.38 0.58 1.69 16 3 N -0.46 -10.21 2.81 -527.78 -1.48 -11.70 16 4 C 0.18 3.91 12.80 179.77 2.30 6.21 16 5 N -0.34 -11.72 12.18 -59.32 -0.72 -12.44 16 6 N -0.34 -13.20 11.60 -56.85 -0.66 -13.86 16 7 C 0.13 4.34 8.06 179.55 1.45 5.78 16 8 S 0.08 2.79 21.07 -56.49 -1.19 1.60 16 9 C -0.11 -4.42 4.56 71.24 0.32 -4.10 16 10 C 0.51 23.42 7.59 87.66 0.67 24.08 16 11 O -0.55 -24.95 12.29 -3.02 -0.04 -24.99 16 12 N -0.41 -20.28 2.30 -458.89 -1.06 -21.34 16 13 C -0.37 -19.59 8.01 84.02 0.67 -18.91 16 14 H 0.09 4.96 7.70 -2.91 -0.02 4.93 16 15 C 0.06 3.02 4.61 84.91 0.39 3.41 16 16 N -0.89 -49.80 13.96 21.65 0.30 -49.50 16 17 Si 0.92 43.72 23.84 68.60 1.64 45.36 16 18 H -0.23 -10.30 6.14 99.48 0.61 -9.69 16 19 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 20 H -0.27 -13.62 6.48 99.48 0.64 -12.98 16 21 C 0.13 5.91 4.12 38.22 0.16 6.07 16 22 C -0.18 -7.90 5.57 22.41 0.12 -7.77 16 23 C -0.11 -3.73 9.76 22.25 0.22 -3.51 16 24 C -0.15 -4.72 10.04 22.30 0.22 -4.50 16 25 C -0.10 -3.43 10.04 22.25 0.22 -3.21 16 26 C -0.20 -8.37 9.03 22.41 0.20 -8.17 16 27 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 1.22 8.01 -2.39 -0.02 1.20 16 32 H 0.27 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.11 4.94 8.14 -2.39 -0.02 4.92 16 34 H 0.11 4.91 7.73 -2.40 -0.02 4.89 16 35 H 0.28 14.89 8.31 -92.71 -0.77 14.12 16 36 H 0.12 5.62 5.70 -2.91 -0.02 5.61 16 37 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 38 H 0.16 3.41 8.06 -2.91 -0.02 3.38 16 39 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 40 H 0.17 7.33 4.58 -58.50 -0.27 7.06 16 Total: -1.00 -73.33 345.93 5.72 -67.61 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.66 Total: 23.34 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 8.27 Total: -4.09 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -3.62 Total: -108.84 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.04 Total: -24.99 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.64 Total: 45.36 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.19 Total: 1.60 kcal Total: -73.33 5.72 -67.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019357833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.406 kcal (2) G-P(sol) polarization free energy of solvation -73.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds