Wall clock time and date at job start Tue Mar 31 2020 16:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37319 * 125.82700 * 2 1 4 4 C 1.50700 * 125.58603 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.46894 * 90.00088 * 4 3 2 6 6 N 1.46506 * 109.46961 * 180.02562 * 5 4 3 7 7 C 1.34778 * 119.99773 * 180.02562 * 6 5 4 8 8 O 1.21547 * 120.00290 * 359.97438 * 7 6 5 9 9 C 1.47891 * 119.99520 * 180.02562 * 7 6 5 10 10 C 1.39922 * 120.02534 * 359.72308 * 9 7 6 11 11 C 1.38330 * 120.35333 * 179.74460 * 10 9 7 12 12 C 1.37756 * 120.41324 * 0.55368 * 11 10 9 13 13 C 1.40745 * 120.03838 * 359.70570 * 12 11 10 14 14 C 1.41437 * 120.17909 * 180.02562 * 13 12 11 15 15 H 1.07989 * 120.00235 * 150.17177 * 14 13 12 16 16 C 1.39946 * 119.99460 * 330.17754 * 14 13 12 17 17 N 1.30827 * 119.99505 * 161.73287 * 16 14 13 18 18 Si 1.86792 * 120.00024 * 341.72542 * 16 14 13 19 19 H 1.48501 * 109.46977 * 95.41848 * 18 16 14 20 20 H 1.48500 * 109.47095 * 215.41525 * 18 16 14 21 21 H 1.48499 * 109.47462 * 335.41870 * 18 16 14 22 22 C 1.38990 * 120.02055 * 179.97438 * 9 7 6 23 23 N 1.29413 * 108.83009 * 180.24309 * 3 2 1 24 24 N 1.40172 * 108.13819 * 359.58536 * 23 3 2 25 25 H 0.97001 * 126.35597 * 180.16481 * 24 23 3 26 26 C 1.34815 * 125.82913 * 179.97438 * 2 1 3 27 27 S 1.71195 * 126.30001 * 0.02562 * 26 2 1 28 28 H 1.08999 * 109.47102 * 90.00139 * 1 2 3 29 29 H 1.09000 * 109.47170 * 210.00210 * 1 2 3 30 30 H 1.08999 * 109.47269 * 330.00053 * 1 2 3 31 31 H 1.09009 * 109.46971 * 330.00434 * 4 3 2 32 32 H 1.08997 * 109.47302 * 210.00593 * 4 3 2 33 33 H 1.08994 * 109.47526 * 60.00217 * 5 4 3 34 34 H 1.08999 * 109.47182 * 299.99965 * 5 4 3 35 35 H 0.97001 * 119.99793 * 0.02562 * 6 5 4 36 36 H 1.07996 * 119.82387 * 0.02562 * 10 9 7 37 37 H 1.08004 * 119.79060 * 180.28506 * 11 10 9 38 38 H 1.07997 * 119.97762 * 179.72413 * 12 11 10 39 39 H 0.97002 * 119.99891 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.20539 * 359.96178 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2688 1.1134 0.0000 4 6 1.7885 2.5418 -0.0005 5 6 1.6254 3.0255 1.4418 6 7 1.1578 4.4139 1.4412 7 6 0.9431 5.0531 2.6082 8 8 1.1368 4.4774 3.6611 9 6 0.4705 6.4545 2.6077 10 6 0.2519 7.1191 1.3959 11 6 -0.1951 8.4282 1.3874 12 6 -0.4192 9.0962 2.5711 13 6 -0.1996 8.4457 3.7998 14 6 -0.4293 9.1287 5.0169 15 1 -0.7348 8.5793 5.8950 16 6 -0.2608 10.5164 5.0831 17 7 -0.7991 11.1945 6.0638 18 14 0.7328 11.4001 3.7713 19 1 -0.1829 11.9262 2.7272 20 1 1.4777 12.5263 4.3894 21 1 1.6935 10.4506 3.1543 22 6 0.2483 7.1139 3.8108 23 7 3.5064 0.7351 -0.0052 24 7 3.5343 -0.6664 0.0009 25 1 4.3269 -1.2257 0.0012 26 6 2.2542 -1.0930 0.0005 27 16 1.7288 -2.7224 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 0.8292 2.6023 -0.5147 32 1 2.5163 3.1697 -0.5144 33 1 2.5845 2.9650 1.9559 34 1 0.8975 2.3976 1.9555 35 1 1.0029 4.8732 0.6010 36 1 0.4287 6.6059 0.4623 37 1 -0.3653 8.9310 0.4469 38 1 -0.7639 10.1196 2.5563 39 1 -0.6827 12.1565 6.1095 40 1 0.4191 6.6059 4.7485 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067050915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:21 Heat of formation + Delta-G solvation = 65.858952 kcal Electronic energy + Delta-G solvation = -24354.778668 eV Core-core repulsion = 20683.130709 eV Total energy + Delta-G solvation = -3671.647959 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.35758 -39.68227 -37.53699 -36.25604 -35.51621 -33.85977 -33.43503 -31.17426 -30.27963 -29.77097 -28.42435 -25.59700 -24.87551 -24.24587 -22.67976 -21.55369 -20.78554 -20.25009 -19.68933 -18.09966 -17.46213 -17.30746 -16.47946 -16.36968 -16.19072 -15.62486 -15.59150 -14.81042 -14.67701 -14.16971 -14.03726 -13.88000 -13.69153 -13.39825 -12.96609 -12.83974 -12.81278 -12.55042 -12.18815 -12.02227 -11.78909 -11.70212 -11.32781 -11.19485 -11.14481 -10.89262 -10.65059 -10.11726 -9.84244 -9.60337 -9.28226 -9.17224 -8.17035 -8.14820 -7.99374 -7.87399 -7.09509 -4.64979 0.55298 0.85639 0.96233 1.76286 1.88841 1.94921 2.41043 2.97827 3.09267 3.11197 3.17546 3.45028 3.51790 3.84545 3.85767 4.02897 4.17090 4.35811 4.42058 4.59729 4.73357 4.84361 5.06034 5.16121 5.22468 5.28235 5.50429 5.61444 5.74283 5.88974 6.01425 6.28005 6.32614 6.53764 6.54572 6.56981 6.86462 7.08743 7.27195 7.37704 7.55214 7.65816 7.86062 8.18671 8.42062 8.46867 8.61498 9.92363 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.033313 B = 0.001947 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.303820 B =14377.315118 C =14552.522160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.490 5.490 3 C 0.286 3.714 4 C -0.059 4.059 5 C 0.126 3.874 6 N -0.735 5.735 7 C 0.567 3.433 8 O -0.542 6.542 9 C -0.109 4.109 10 C -0.219 4.219 11 C -0.082 4.082 12 C -0.221 4.221 13 C 0.081 3.919 14 C -0.440 4.440 15 H 0.094 0.906 16 C 0.082 3.918 17 N -0.800 5.800 18 Si 0.912 3.088 19 H -0.269 1.269 20 H -0.289 1.289 21 H -0.244 1.244 22 C -0.135 4.135 23 N -0.267 5.267 24 N -0.472 5.472 25 H 0.469 0.531 26 C 0.472 3.528 27 S -0.578 6.578 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.403 0.597 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.287 0.713 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.214 -12.786 -15.396 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.191 5.191 3 C 0.006 3.994 4 C -0.099 4.099 5 C 0.001 3.999 6 N -0.391 5.391 7 C 0.357 3.643 8 O -0.420 6.420 9 C -0.112 4.112 10 C -0.239 4.239 11 C -0.100 4.100 12 C -0.241 4.241 13 C 0.078 3.922 14 C -0.468 4.468 15 H 0.112 0.888 16 C -0.138 4.138 17 N -0.423 5.423 18 Si 0.738 3.262 19 H -0.195 1.195 20 H -0.216 1.216 21 H -0.167 1.167 22 C -0.155 4.155 23 N -0.089 5.089 24 N -0.196 5.196 25 H 0.321 0.679 26 C 0.109 3.891 27 S -0.452 6.452 28 H 0.110 0.890 29 H 0.131 0.869 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.240 0.760 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.924 -13.587 -14.431 20.423 hybrid contribution 0.306 1.024 -0.927 1.415 sum 5.230 -12.563 -15.358 20.520 Atomic orbital electron populations 1.22388 0.71898 1.06876 1.05423 1.46136 1.10290 1.03690 1.58992 1.24559 0.85850 0.92486 0.96546 1.20599 1.04456 0.84895 0.99946 1.21103 1.01496 0.83994 0.93355 1.45815 1.70680 1.12785 1.09781 1.18812 0.75891 0.86983 0.82567 1.90729 1.51684 1.68276 1.31306 1.19346 1.05261 0.91388 0.95237 1.20341 1.12689 0.96178 0.94681 1.20515 0.98406 0.94304 0.96811 1.21186 1.09942 1.00197 0.92762 1.17701 0.89637 0.91853 0.93008 1.19542 1.38425 0.91918 0.96943 0.88782 1.26196 0.93667 0.97649 0.96251 1.69688 1.32865 1.09607 1.30171 0.86293 0.81015 0.78793 0.80109 1.19503 1.21579 1.16682 1.21280 1.02775 0.95609 0.95838 1.77320 1.17030 0.90962 1.23576 1.47055 1.07427 1.03894 1.61194 0.67856 1.23901 0.83921 0.94067 0.87164 1.93663 1.83802 0.94078 1.73674 0.88975 0.86881 0.88089 0.87218 0.86164 0.90475 0.91114 0.76046 0.88607 0.88236 0.87853 0.90204 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.33 10.52 59.85 0.63 0.96 16 2 N -0.49 -3.51 3.14 -121.97 -0.38 -3.90 16 3 C 0.29 1.91 7.24 -154.19 -1.12 0.80 16 4 C -0.06 -0.26 5.42 -27.88 -0.15 -0.41 16 5 C 0.13 1.06 5.66 -4.04 -0.02 1.04 16 6 N -0.74 -8.03 5.51 -61.23 -0.34 -8.37 16 7 C 0.57 9.59 7.77 -12.31 -0.10 9.49 16 8 O -0.54 -11.04 16.33 5.32 0.09 -10.95 16 9 C -0.11 -2.09 5.87 -105.04 -0.62 -2.70 16 10 C -0.22 -3.71 9.55 -38.92 -0.37 -4.08 16 11 C -0.08 -1.52 10.01 -39.72 -0.40 -1.92 16 12 C -0.22 -4.83 7.17 -38.81 -0.28 -5.11 16 13 C 0.08 1.93 5.10 -106.87 -0.55 1.38 16 14 C -0.44 -11.34 9.57 -37.73 -0.36 -11.70 16 15 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 16 C 0.08 2.05 5.40 -17.34 -0.09 1.95 16 17 N -0.80 -20.35 13.93 55.55 0.77 -19.58 16 18 Si 0.91 19.44 24.52 -169.99 -4.17 15.28 16 19 H -0.27 -5.49 6.71 56.52 0.38 -5.11 16 20 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.24 -5.30 6.86 56.52 0.39 -4.91 16 22 C -0.13 -3.03 9.34 -38.44 -0.36 -3.39 16 23 N -0.27 -2.17 12.64 32.97 0.42 -1.76 16 24 N -0.47 -3.76 7.40 30.00 0.22 -3.54 16 25 H 0.47 2.68 8.96 -182.54 -1.64 1.04 16 26 C 0.47 4.52 8.14 -86.74 -0.71 3.82 16 27 S -0.58 -7.57 30.37 -107.50 -3.26 -10.84 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.11 0.63 7.64 -51.93 -0.40 0.23 16 30 H 0.10 0.25 7.65 -51.93 -0.40 -0.14 16 31 H 0.11 0.21 7.71 -51.92 -0.40 -0.19 16 32 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.40 3.31 6.49 -40.82 -0.26 3.05 16 36 H 0.10 1.20 6.38 -52.49 -0.33 0.87 16 37 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 38 H 0.10 2.25 4.72 -52.49 -0.25 2.00 16 39 H 0.29 6.58 8.30 -40.82 -0.34 6.24 16 40 H 0.12 2.67 7.64 -52.49 -0.40 2.26 16 LS Contribution 355.43 15.07 5.36 5.36 Total: -1.00 -33.21 355.43 -11.57 -44.77 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.79 Total: 3.39 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -4.48 Total: -9.87 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.69 Total: -37.14 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.17 Total: 15.28 kcal Atomic # 16 Polarization: -7.57 SS G_CDS: -3.26 Total: -10.84 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.21 -11.57 -44.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067050915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.632 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds