Wall clock time and date at job start Tue Mar 31 2020 16:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37319 * 125.82700 * 2 1 4 4 C 1.50700 * 125.58603 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.46894 * 90.00088 * 4 3 2 6 6 N 1.46506 * 109.46961 * 180.02562 * 5 4 3 7 7 C 1.34778 * 119.99773 * 180.02562 * 6 5 4 8 8 O 1.21547 * 120.00290 * 359.97438 * 7 6 5 9 9 C 1.47891 * 119.99520 * 180.02562 * 7 6 5 10 10 C 1.39922 * 120.02534 * 359.72308 * 9 7 6 11 11 C 1.38330 * 120.35333 * 179.74460 * 10 9 7 12 12 C 1.37756 * 120.41324 * 0.55368 * 11 10 9 13 13 C 1.40745 * 120.03838 * 359.70570 * 12 11 10 14 14 C 1.41437 * 120.17909 * 180.02562 * 13 12 11 15 15 H 1.07989 * 120.00235 * 150.17177 * 14 13 12 16 16 C 1.39946 * 119.99460 * 330.17754 * 14 13 12 17 17 N 1.30827 * 119.99505 * 161.73287 * 16 14 13 18 18 Si 1.86792 * 120.00024 * 341.72542 * 16 14 13 19 19 H 1.48501 * 109.46977 * 95.41848 * 18 16 14 20 20 H 1.48500 * 109.47095 * 215.41525 * 18 16 14 21 21 H 1.48499 * 109.47462 * 335.41870 * 18 16 14 22 22 C 1.38990 * 120.02055 * 179.97438 * 9 7 6 23 23 N 1.29413 * 108.83009 * 180.24309 * 3 2 1 24 24 N 1.40172 * 108.13819 * 359.58536 * 23 3 2 25 25 H 0.97001 * 126.35597 * 180.16481 * 24 23 3 26 26 C 1.34815 * 125.82913 * 179.97438 * 2 1 3 27 27 S 1.71195 * 126.30001 * 0.02562 * 26 2 1 28 28 H 1.08999 * 109.47102 * 90.00139 * 1 2 3 29 29 H 1.09000 * 109.47170 * 210.00210 * 1 2 3 30 30 H 1.08999 * 109.47269 * 330.00053 * 1 2 3 31 31 H 1.09009 * 109.46971 * 330.00434 * 4 3 2 32 32 H 1.08997 * 109.47302 * 210.00593 * 4 3 2 33 33 H 1.08994 * 109.47526 * 60.00217 * 5 4 3 34 34 H 1.08999 * 109.47182 * 299.99965 * 5 4 3 35 35 H 0.97001 * 119.99793 * 0.02562 * 6 5 4 36 36 H 1.07996 * 119.82387 * 0.02562 * 10 9 7 37 37 H 1.08004 * 119.79060 * 180.28506 * 11 10 9 38 38 H 1.07997 * 119.97762 * 179.72413 * 12 11 10 39 39 H 0.97002 * 119.99891 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.20539 * 359.96178 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2688 1.1134 0.0000 4 6 1.7885 2.5418 -0.0005 5 6 1.6254 3.0255 1.4418 6 7 1.1578 4.4139 1.4412 7 6 0.9431 5.0531 2.6082 8 8 1.1368 4.4774 3.6611 9 6 0.4705 6.4545 2.6077 10 6 0.2519 7.1191 1.3959 11 6 -0.1951 8.4282 1.3874 12 6 -0.4192 9.0962 2.5711 13 6 -0.1996 8.4457 3.7998 14 6 -0.4293 9.1287 5.0169 15 1 -0.7348 8.5793 5.8950 16 6 -0.2608 10.5164 5.0831 17 7 -0.7991 11.1945 6.0638 18 14 0.7328 11.4001 3.7713 19 1 -0.1829 11.9262 2.7272 20 1 1.4777 12.5263 4.3894 21 1 1.6935 10.4506 3.1543 22 6 0.2483 7.1139 3.8108 23 7 3.5064 0.7351 -0.0052 24 7 3.5343 -0.6664 0.0009 25 1 4.3269 -1.2257 0.0012 26 6 2.2542 -1.0930 0.0005 27 16 1.7288 -2.7224 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 0.8292 2.6023 -0.5147 32 1 2.5163 3.1697 -0.5144 33 1 2.5845 2.9650 1.9559 34 1 0.8975 2.3976 1.9555 35 1 1.0029 4.8732 0.6010 36 1 0.4287 6.6059 0.4623 37 1 -0.3653 8.9310 0.4469 38 1 -0.7639 10.1196 2.5563 39 1 -0.6827 12.1565 6.1095 40 1 0.4191 6.6059 4.7485 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067050915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:20 Heat of formation + Delta-G solvation = 42.985836 kcal Electronic energy + Delta-G solvation = -24355.770520 eV Core-core repulsion = 20683.130709 eV Total energy + Delta-G solvation = -3672.639811 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.01242 -41.01267 -39.07712 -37.05773 -36.23998 -35.55835 -34.33834 -32.60325 -31.79831 -30.79145 -28.89920 -27.17880 -25.93029 -24.99311 -23.93884 -22.44748 -22.13858 -21.53116 -20.41338 -19.57952 -18.17187 -18.15347 -17.90026 -17.33192 -17.02189 -16.94865 -16.49660 -16.42295 -15.61406 -15.37150 -15.05364 -14.92378 -14.56177 -14.53949 -14.40679 -13.92267 -13.80589 -13.52124 -13.29262 -13.12505 -12.82477 -12.68793 -12.64882 -12.56918 -12.27674 -11.98242 -11.74352 -11.71472 -11.53632 -11.20200 -10.86012 -10.23316 -9.59001 -9.52384 -9.15237 -9.06538 -8.89795 -6.53595 -0.18764 0.12568 0.20940 0.38233 0.78008 1.21041 1.26660 1.33194 1.43596 1.49827 1.97211 2.13210 2.15807 2.67680 2.91311 3.30824 3.48467 3.50131 3.63664 3.95350 3.96642 4.30889 4.33162 4.37516 4.45172 4.46813 4.61809 4.68935 4.71406 4.85614 4.92150 4.96521 5.10709 5.18995 5.33170 5.40379 5.45295 5.68022 5.75171 5.88101 5.91797 6.14099 6.33222 6.58547 6.68813 6.76242 7.24831 8.19354 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.033313 B = 0.001947 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.303820 B =14377.315118 C =14552.522160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.479 5.479 3 C 0.293 3.707 4 C -0.046 4.046 5 C 0.124 3.876 6 N -0.703 5.703 7 C 0.566 3.434 8 O -0.586 6.586 9 C -0.113 4.113 10 C -0.175 4.175 11 C -0.084 4.084 12 C -0.225 4.225 13 C 0.063 3.937 14 C -0.491 4.491 15 H 0.047 0.953 16 C 0.041 3.959 17 N -0.852 5.852 18 Si 0.970 3.030 19 H -0.246 1.246 20 H -0.281 1.281 21 H -0.248 1.248 22 C -0.169 4.169 23 N -0.280 5.280 24 N -0.459 5.459 25 H 0.477 0.523 26 C 0.478 3.522 27 S -0.663 6.663 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.128 0.872 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.423 0.577 36 H 0.162 0.838 37 H 0.149 0.851 38 H 0.103 0.897 39 H 0.294 0.706 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 -12.201 -20.989 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.178 5.178 3 C 0.013 3.987 4 C -0.086 4.086 5 C -0.001 4.001 6 N -0.358 5.358 7 C 0.355 3.645 8 O -0.467 6.467 9 C -0.116 4.116 10 C -0.194 4.194 11 C -0.102 4.102 12 C -0.245 4.245 13 C 0.060 3.940 14 C -0.520 4.520 15 H 0.065 0.935 16 C -0.173 4.173 17 N -0.478 5.478 18 Si 0.792 3.208 19 H -0.171 1.171 20 H -0.208 1.208 21 H -0.172 1.172 22 C -0.189 4.189 23 N -0.102 5.102 24 N -0.182 5.182 25 H 0.330 0.670 26 C 0.111 3.889 27 S -0.538 6.538 28 H 0.133 0.867 29 H 0.116 0.884 30 H 0.146 0.854 31 H 0.169 0.831 32 H 0.162 0.838 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.262 0.738 36 H 0.179 0.821 37 H 0.167 0.833 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.603 -12.998 -20.088 24.573 hybrid contribution 0.143 0.676 0.613 0.923 sum 5.745 -12.322 -19.475 23.751 Atomic orbital electron populations 1.22723 0.70130 1.07473 1.07105 1.46369 1.11302 1.03030 1.57069 1.25015 0.85245 0.93105 0.95300 1.20704 1.07377 0.83128 0.97406 1.21185 1.00485 0.82267 0.96157 1.45446 1.68309 1.13562 1.08489 1.18517 0.76084 0.86274 0.83639 1.90729 1.53665 1.68884 1.33446 1.19670 1.04191 0.92887 0.94856 1.21084 1.06966 0.95380 0.95981 1.21090 0.96903 0.94876 0.97304 1.21404 1.09404 1.00487 0.93160 1.17780 0.90404 0.92519 0.93275 1.19468 1.42814 0.92888 0.96862 0.93499 1.26954 0.94130 0.97753 0.98413 1.69736 1.35336 1.10197 1.32547 0.85431 0.79674 0.77587 0.78130 1.17073 1.20791 1.17189 1.21205 1.05212 0.95848 0.96671 1.77379 1.18116 0.90295 1.24389 1.47130 1.07309 1.04360 1.59392 0.66972 1.23378 0.84646 0.93349 0.87571 1.93805 1.84703 0.97563 1.77745 0.86732 0.88439 0.85377 0.83149 0.83774 0.92178 0.91317 0.73752 0.82110 0.83344 0.87912 0.89553 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 10.52 127.77 1.34 1.69 16 2 N -0.48 -5.32 3.14 -539.81 -1.69 -7.02 16 3 C 0.29 2.62 7.24 137.70 1.00 3.61 16 4 C -0.05 -0.11 5.42 29.85 0.16 0.05 16 5 C 0.12 1.48 5.66 86.38 0.49 1.97 16 6 N -0.70 -11.32 5.51 -465.93 -2.57 -13.89 16 7 C 0.57 17.44 7.77 86.80 0.67 18.11 16 8 O -0.59 -23.60 16.33 -3.86 -0.06 -23.66 16 9 C -0.11 -4.00 5.87 -20.13 -0.12 -4.11 16 10 C -0.17 -4.75 9.55 22.70 0.22 -4.53 16 11 C -0.08 -2.61 10.01 22.18 0.22 -2.38 16 12 C -0.23 -9.32 7.17 22.77 0.16 -9.16 16 13 C 0.06 3.07 5.10 -21.32 -0.11 2.96 16 14 C -0.49 -27.45 9.57 23.47 0.22 -27.23 16 15 H 0.05 2.90 8.06 -2.92 -0.02 2.88 16 16 C 0.04 2.18 5.40 85.26 0.46 2.64 16 17 N -0.85 -46.33 13.93 21.83 0.30 -46.03 16 18 Si 0.97 40.17 24.52 68.60 1.68 41.85 16 19 H -0.25 -9.18 6.71 99.48 0.67 -8.51 16 20 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 21 H -0.25 -10.30 6.86 99.48 0.68 -9.62 16 22 C -0.17 -7.81 9.34 23.01 0.21 -7.59 16 23 N -0.28 -3.60 12.64 -49.61 -0.63 -4.23 16 24 N -0.46 -6.46 7.40 -59.00 -0.44 -6.90 16 25 H 0.48 4.87 8.96 -213.27 -1.91 2.96 16 26 C 0.48 8.45 8.14 178.99 1.46 9.91 16 27 S -0.66 -17.69 30.37 -56.49 -1.72 -19.41 16 28 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.10 0.93 7.64 -2.39 -0.02 0.91 16 30 H 0.13 0.00 7.65 -2.39 -0.02 -0.02 16 31 H 0.15 -0.72 7.71 -2.38 -0.02 -0.73 16 32 H 0.14 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.42 3.40 6.49 -92.71 -0.60 2.79 16 36 H 0.16 2.35 6.38 -2.91 -0.02 2.33 16 37 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 38 H 0.10 4.25 4.72 -2.91 -0.01 4.23 16 39 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 40 H 0.09 4.34 7.64 -2.91 -0.02 4.32 16 Total: -1.00 -83.40 355.43 -0.18 -83.58 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -1.46 Total: 9.76 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 6.40 Total: -14.06 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -5.02 Total: -78.06 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.06 Total: -23.66 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.68 Total: 41.85 kcal Atomic # 16 Polarization: -17.69 SS G_CDS: -1.72 Total: -19.41 kcal Total: -83.40 -0.18 -83.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067050915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.561 kcal (2) G-P(sol) polarization free energy of solvation -83.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds