Wall clock time and date at job start Tue Mar 31 2020 16:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 120.00068 * 2 1 4 4 H 1.07997 * 120.00137 * 202.35356 * 3 2 1 5 5 C 1.38811 * 119.99771 * 22.35070 * 3 2 1 6 6 N 1.31620 * 120.00174 * 11.43337 * 5 3 2 7 7 Si 1.86806 * 119.99799 * 191.42908 * 5 3 2 8 8 H 1.48504 * 109.46963 * 60.00604 * 7 5 3 9 9 H 1.48508 * 109.46864 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47166 * 300.00297 * 7 5 3 11 11 C 1.46502 * 120.00299 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47194 * 270.00378 * 11 2 1 13 13 O 1.21281 * 120.00136 * 0.02562 * 12 11 2 14 14 N 1.34771 * 119.99900 * 179.97438 * 12 11 2 15 15 C 1.46501 * 120.00406 * 180.02562 * 14 12 11 16 16 C 1.50695 * 109.47609 * 179.97438 * 15 14 12 17 17 C 1.38266 * 119.94472 * 269.72445 * 16 15 14 18 18 C 1.38145 * 120.05678 * 179.72415 * 17 16 15 19 19 C 1.38734 * 119.94251 * 0.57211 * 18 17 16 20 20 O 1.35895 * 120.05339 * 179.68634 * 19 18 17 21 21 C 1.42901 * 117.00315 * 0.02562 * 20 19 18 22 22 F 1.39900 * 109.46729 * 60.00685 * 21 20 19 23 23 F 1.39895 * 109.46927 * 180.02562 * 21 20 19 24 24 F 1.39900 * 109.47114 * 300.00459 * 21 20 19 25 25 C 1.38735 * 119.88526 * 359.70165 * 19 18 17 26 26 C 1.38134 * 119.94654 * 0.02562 * 25 19 18 27 27 H 1.08998 * 109.46933 * 274.12726 * 1 2 3 28 28 H 1.09001 * 109.47189 * 34.12413 * 1 2 3 29 29 H 1.08995 * 109.47129 * 154.12531 * 1 2 3 30 30 H 0.97004 * 119.99862 * 179.97438 * 6 5 3 31 31 H 1.08996 * 109.47187 * 150.00268 * 11 2 1 32 32 H 1.09003 * 109.46797 * 30.00166 * 11 2 1 33 33 H 0.97000 * 120.00456 * 359.97438 * 14 12 11 34 34 H 1.09003 * 109.46703 * 299.99777 * 15 14 12 35 35 H 1.09001 * 109.47374 * 59.99070 * 15 14 12 36 36 H 1.08005 * 119.96778 * 359.97438 * 17 16 15 37 37 H 1.08003 * 120.02753 * 180.24965 * 18 17 16 38 38 H 1.08002 * 120.02111 * 179.97438 * 25 19 18 39 39 H 1.08001 * 119.97398 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3557 5 6 1.5338 2.3429 0.4572 6 7 0.3851 2.2688 1.0953 7 14 2.3356 4.0050 0.1668 8 1 2.4883 4.2326 -1.2928 9 1 1.4835 5.0737 0.7474 10 1 3.6717 4.0299 0.8142 11 6 2.1976 -1.2687 0.0006 12 6 2.4487 -1.7032 1.4216 13 8 2.0542 -1.0205 2.3431 14 7 3.1108 -2.8508 1.6683 15 6 3.3545 -3.2735 3.0497 16 6 4.1071 -4.5791 3.0502 17 6 3.4137 -5.7754 3.0563 18 6 4.1012 -6.9736 3.0510 19 6 5.4886 -6.9759 3.0517 20 8 6.1671 -8.1533 3.0530 21 6 5.3880 -9.3512 3.0531 22 9 4.5821 -9.3833 1.9100 23 9 6.2394 -10.4612 3.0551 24 9 4.5798 -9.3818 4.1946 25 6 6.1819 -5.7742 3.0514 26 6 5.4897 -4.5788 3.0509 27 1 -0.3633 0.0740 1.0250 28 1 -0.3633 0.8507 -0.5765 29 1 -0.3633 -0.9246 -0.4485 30 1 -0.0451 3.0773 1.4151 31 1 3.1500 -1.1386 -0.5133 32 1 1.6085 -2.0286 -0.5130 33 1 3.4254 -3.3974 0.9313 34 1 3.9437 -2.5139 3.5635 35 1 2.4019 -3.4033 3.5634 36 1 2.3337 -5.7729 3.0610 37 1 3.5592 -7.9077 3.0517 38 1 7.2619 -5.7735 3.0524 39 1 6.0290 -3.6431 3.0511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075828684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:00 Heat of formation + Delta-G solvation = -171.292594 kcal Electronic energy + Delta-G solvation = -27588.077840 eV Core-core repulsion = 22889.243856 eV Total energy + Delta-G solvation = -4698.833984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -50.86836 -48.59353 -48.45816 -40.69359 -38.99635 -38.05172 -35.19013 -34.13013 -31.53423 -31.37405 -30.83673 -27.71625 -26.55178 -25.77889 -25.00190 -23.37884 -22.15860 -21.36419 -20.09351 -19.68388 -19.57946 -19.42438 -17.22316 -16.84752 -16.62283 -15.86472 -15.72473 -15.62921 -15.40387 -15.19080 -14.92003 -14.85877 -14.65122 -14.58564 -14.54982 -14.47082 -14.16357 -13.73359 -13.64717 -13.39993 -13.02756 -12.91499 -12.39120 -12.19928 -11.72070 -11.65052 -11.40164 -11.09537 -10.80808 -10.63789 -10.32662 -10.00949 -9.85838 -9.46297 -9.20912 -8.75850 -8.53727 -8.43598 -6.72863 -5.66033 -3.12543 0.74606 0.89872 1.05456 2.40986 3.12217 3.34130 3.42748 3.47133 3.48396 3.56639 3.60448 3.95623 4.24707 4.35123 4.52666 4.54873 4.71861 4.95249 5.03991 5.43040 5.47897 5.59464 5.61030 5.66916 5.72721 5.83855 5.99996 6.07501 6.17416 6.28846 6.32469 6.52463 6.76461 6.94412 7.41947 7.78647 7.88200 8.12054 8.43306 9.13619 9.27110 9.88203 10.35567 11.38616 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.032101 B = 0.001999 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.050556 B =14005.182429 C =14279.747714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.573 5.573 3 C -0.259 4.259 4 H 0.069 0.931 5 C 0.008 3.992 6 N -0.897 5.897 7 Si 0.907 3.093 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.133 3.867 12 C 0.469 3.531 13 O -0.508 6.508 14 N -0.747 5.747 15 C 0.159 3.841 16 C -0.111 4.111 17 C -0.061 4.061 18 C -0.191 4.191 19 C 0.101 3.899 20 O -0.311 6.311 21 C 0.604 3.396 22 F -0.164 7.164 23 F -0.133 7.133 24 F -0.165 7.165 25 C -0.124 4.124 26 C -0.066 4.066 27 H 0.033 0.967 28 H 0.049 0.951 29 H -0.004 1.004 30 H 0.253 0.747 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.392 0.608 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.715 -25.107 3.144 27.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.292 5.292 3 C -0.389 4.389 4 H 0.087 0.913 5 C -0.191 4.191 6 N -0.540 5.540 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.000 4.000 12 C 0.253 3.747 13 O -0.379 6.379 14 N -0.405 5.405 15 C 0.035 3.965 16 C -0.112 4.112 17 C -0.080 4.080 18 C -0.210 4.210 19 C 0.059 3.941 20 O -0.231 6.231 21 C 0.513 3.487 22 F -0.146 7.146 23 F -0.114 7.114 24 F -0.147 7.147 25 C -0.142 4.142 26 C -0.084 4.084 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.014 0.986 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.225 0.775 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.394 -24.412 3.882 26.815 hybrid contribution 0.449 0.144 -0.097 0.482 sum 10.843 -24.268 3.786 26.849 Atomic orbital electron populations 1.20860 0.81912 0.95540 0.99784 1.43878 1.02128 0.99808 1.83405 1.19102 0.98285 0.84905 1.36600 0.91338 1.25095 0.97685 0.98645 0.97709 1.70089 1.17663 1.27084 1.39150 0.86319 0.78599 0.83682 0.77757 1.20983 1.21603 1.20952 1.21030 0.97974 0.90334 0.90667 1.23759 0.76457 0.78952 0.95542 1.90709 1.48508 1.52344 1.46344 1.46713 1.61480 1.25820 1.06471 1.20054 0.98987 0.91195 0.86224 1.20142 0.93923 0.95357 1.01730 1.20955 1.00556 0.90556 0.95938 1.21509 0.92070 1.00532 1.06854 1.18737 0.90917 0.82948 1.01489 1.86410 1.35270 1.12228 1.89229 1.19349 0.74969 0.79602 0.74774 1.93313 1.73744 1.96206 1.51368 1.93308 1.71455 1.50351 1.96312 1.93309 1.73650 1.96213 1.51537 1.20427 1.00777 0.88619 1.04381 1.21039 0.93522 0.97487 0.96357 0.94815 0.93262 0.98555 0.93708 0.90904 0.91527 0.77513 0.91053 0.91198 0.84624 0.84902 0.84283 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.17 9.01 59.85 0.54 4.71 16 2 N -0.57 -14.76 2.41 -182.50 -0.44 -15.20 16 3 C -0.26 -7.30 9.67 -15.06 -0.15 -7.45 16 4 H 0.07 1.85 7.84 -52.49 -0.41 1.44 16 5 C 0.01 0.24 5.13 -17.43 -0.09 0.15 16 6 N -0.90 -27.23 10.59 55.49 0.59 -26.64 16 7 Si 0.91 22.35 29.57 -169.99 -5.03 17.32 16 8 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 C 0.13 2.65 6.19 -5.19 -0.03 2.62 16 12 C 0.47 9.45 7.90 -10.99 -0.09 9.36 16 13 O -0.51 -13.21 16.43 5.56 0.09 -13.12 16 14 N -0.75 -10.75 5.55 -61.47 -0.34 -11.09 16 15 C 0.16 2.07 5.80 -5.20 -0.03 2.04 16 16 C -0.11 -1.11 5.25 -104.60 -0.55 -1.66 16 17 C -0.06 -0.57 9.69 -39.61 -0.38 -0.96 16 18 C -0.19 -1.74 8.26 -39.43 -0.33 -2.06 16 19 C 0.10 0.94 6.48 -39.21 -0.25 0.69 16 20 O -0.31 -2.82 10.37 -19.41 -0.20 -3.03 16 21 C 0.60 4.85 3.42 101.05 0.35 5.20 16 22 F -0.16 -1.34 15.56 2.25 0.04 -1.30 16 23 F -0.13 -1.02 17.53 2.25 0.04 -0.99 16 24 F -0.17 -1.34 15.56 2.25 0.04 -1.31 16 25 C -0.12 -1.05 9.99 -39.44 -0.39 -1.44 16 26 C -0.07 -0.58 9.69 -39.61 -0.38 -0.97 16 27 H 0.03 0.96 7.42 -51.93 -0.39 0.58 16 28 H 0.05 1.32 7.18 -51.93 -0.37 0.95 16 29 H 0.00 -0.09 7.85 -51.93 -0.41 -0.50 16 30 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.07 1.32 8.03 -51.93 -0.42 0.90 16 32 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 33 H 0.39 4.45 8.46 -40.82 -0.35 4.11 16 34 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 35 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 37 H 0.13 1.09 5.10 -52.48 -0.27 0.82 16 38 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 349.79 15.07 5.27 5.27 Total: -1.00 -34.45 349.79 -6.00 -40.45 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -4.26 Total: -0.59 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -1.79 Total: 10.22 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.19 Total: -52.93 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.11 Total: -16.15 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.11 Total: -3.60 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.45 -6.00 -40.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.840 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds