Wall clock time and date at job start Tue Mar 31 2020 16:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 120.00068 * 2 1 4 4 H 1.07997 * 120.00137 * 202.35356 * 3 2 1 5 5 C 1.38811 * 119.99771 * 22.35070 * 3 2 1 6 6 N 1.31620 * 120.00174 * 11.43337 * 5 3 2 7 7 Si 1.86806 * 119.99799 * 191.42908 * 5 3 2 8 8 H 1.48504 * 109.46963 * 60.00604 * 7 5 3 9 9 H 1.48508 * 109.46864 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47166 * 300.00297 * 7 5 3 11 11 C 1.46502 * 120.00299 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47194 * 270.00378 * 11 2 1 13 13 O 1.21281 * 120.00136 * 0.02562 * 12 11 2 14 14 N 1.34771 * 119.99900 * 179.97438 * 12 11 2 15 15 C 1.46501 * 120.00406 * 180.02562 * 14 12 11 16 16 C 1.50695 * 109.47609 * 179.97438 * 15 14 12 17 17 C 1.38266 * 119.94472 * 269.72445 * 16 15 14 18 18 C 1.38145 * 120.05678 * 179.72415 * 17 16 15 19 19 C 1.38734 * 119.94251 * 0.57211 * 18 17 16 20 20 O 1.35895 * 120.05339 * 179.68634 * 19 18 17 21 21 C 1.42901 * 117.00315 * 0.02562 * 20 19 18 22 22 F 1.39900 * 109.46729 * 60.00685 * 21 20 19 23 23 F 1.39895 * 109.46927 * 180.02562 * 21 20 19 24 24 F 1.39900 * 109.47114 * 300.00459 * 21 20 19 25 25 C 1.38735 * 119.88526 * 359.70165 * 19 18 17 26 26 C 1.38134 * 119.94654 * 0.02562 * 25 19 18 27 27 H 1.08998 * 109.46933 * 274.12726 * 1 2 3 28 28 H 1.09001 * 109.47189 * 34.12413 * 1 2 3 29 29 H 1.08995 * 109.47129 * 154.12531 * 1 2 3 30 30 H 0.97004 * 119.99862 * 179.97438 * 6 5 3 31 31 H 1.08996 * 109.47187 * 150.00268 * 11 2 1 32 32 H 1.09003 * 109.46797 * 30.00166 * 11 2 1 33 33 H 0.97000 * 120.00456 * 359.97438 * 14 12 11 34 34 H 1.09003 * 109.46703 * 299.99777 * 15 14 12 35 35 H 1.09001 * 109.47374 * 59.99070 * 15 14 12 36 36 H 1.08005 * 119.96778 * 359.97438 * 17 16 15 37 37 H 1.08003 * 120.02753 * 180.24965 * 18 17 16 38 38 H 1.08002 * 120.02111 * 179.97438 * 25 19 18 39 39 H 1.08001 * 119.97398 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3557 5 6 1.5338 2.3429 0.4572 6 7 0.3851 2.2688 1.0953 7 14 2.3356 4.0050 0.1668 8 1 2.4883 4.2326 -1.2928 9 1 1.4835 5.0737 0.7474 10 1 3.6717 4.0299 0.8142 11 6 2.1976 -1.2687 0.0006 12 6 2.4487 -1.7032 1.4216 13 8 2.0542 -1.0205 2.3431 14 7 3.1108 -2.8508 1.6683 15 6 3.3545 -3.2735 3.0497 16 6 4.1071 -4.5791 3.0502 17 6 3.4137 -5.7754 3.0563 18 6 4.1012 -6.9736 3.0510 19 6 5.4886 -6.9759 3.0517 20 8 6.1671 -8.1533 3.0530 21 6 5.3880 -9.3512 3.0531 22 9 4.5821 -9.3833 1.9100 23 9 6.2394 -10.4612 3.0551 24 9 4.5798 -9.3818 4.1946 25 6 6.1819 -5.7742 3.0514 26 6 5.4897 -4.5788 3.0509 27 1 -0.3633 0.0740 1.0250 28 1 -0.3633 0.8507 -0.5765 29 1 -0.3633 -0.9246 -0.4485 30 1 -0.0451 3.0773 1.4151 31 1 3.1500 -1.1386 -0.5133 32 1 1.6085 -2.0286 -0.5130 33 1 3.4254 -3.3974 0.9313 34 1 3.9437 -2.5139 3.5635 35 1 2.4019 -3.4033 3.5634 36 1 2.3337 -5.7729 3.0610 37 1 3.5592 -7.9077 3.0517 38 1 7.2619 -5.7735 3.0524 39 1 6.0290 -3.6431 3.0511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075828684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:59 Heat of formation + Delta-G solvation = -194.483301 kcal Electronic energy + Delta-G solvation = -27589.083464 eV Core-core repulsion = 22889.243856 eV Total energy + Delta-G solvation = -4699.839608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -51.50187 -49.21813 -49.09663 -41.42561 -40.40379 -38.99947 -37.04329 -35.51741 -33.29667 -32.23569 -31.97675 -29.17653 -27.90067 -27.43345 -26.06443 -24.07186 -23.58116 -22.64520 -21.24514 -20.75570 -20.21740 -20.08271 -18.80438 -18.19043 -17.73448 -17.16879 -16.74687 -16.59154 -16.32980 -16.18373 -15.94398 -15.83109 -15.56791 -15.50127 -15.31182 -15.23161 -15.19072 -15.04131 -14.85351 -14.56166 -14.38017 -14.31598 -13.69747 -13.51171 -13.15181 -12.99724 -12.74034 -12.57546 -12.53077 -12.18746 -12.08993 -12.03226 -11.86330 -10.88371 -10.52496 -10.15533 -9.90977 -9.61991 -8.76758 -7.78649 -5.27847 -0.00873 0.20767 0.39967 1.46681 1.50087 1.56351 1.76361 2.01219 2.26479 2.53233 2.70575 2.76008 2.94645 3.39290 3.56394 3.62628 3.67495 3.74964 4.01615 4.22012 4.31690 4.35543 4.57524 4.66644 4.76085 4.79922 4.86178 4.91222 4.94386 5.08428 5.31650 5.33277 5.50116 5.63650 5.64157 5.77709 5.81835 6.31937 6.82235 7.16493 7.62293 7.88994 8.29404 9.25095 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.032101 B = 0.001999 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.050556 B =14005.182429 C =14279.747714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.594 5.594 3 C -0.263 4.263 4 H 0.078 0.922 5 C -0.057 4.057 6 N -0.936 5.936 7 Si 0.972 3.028 8 H -0.269 1.269 9 H -0.298 1.298 10 H -0.279 1.279 11 C 0.127 3.873 12 C 0.473 3.527 13 O -0.575 6.575 14 N -0.721 5.721 15 C 0.164 3.836 16 C -0.117 4.117 17 C -0.061 4.061 18 C -0.195 4.195 19 C 0.096 3.904 20 O -0.315 6.315 21 C 0.607 3.393 22 F -0.164 7.164 23 F -0.130 7.130 24 F -0.165 7.165 25 C -0.122 4.122 26 C -0.061 4.061 27 H -0.008 1.008 28 H 0.024 0.976 29 H 0.037 0.963 30 H 0.245 0.755 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.412 0.588 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.159 0.841 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.662 -26.948 2.166 29.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.315 5.315 3 C -0.393 4.393 4 H 0.095 0.905 5 C -0.252 4.252 6 N -0.582 5.582 7 Si 0.800 3.200 8 H -0.195 1.195 9 H -0.224 1.224 10 H -0.205 1.205 11 C -0.004 4.004 12 C 0.258 3.742 13 O -0.452 6.452 14 N -0.377 5.377 15 C 0.041 3.959 16 C -0.118 4.118 17 C -0.079 4.079 18 C -0.213 4.213 19 C 0.054 3.946 20 O -0.235 6.235 21 C 0.517 3.483 22 F -0.146 7.146 23 F -0.112 7.112 24 F -0.147 7.147 25 C -0.140 4.140 26 C -0.080 4.080 27 H 0.010 0.990 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.248 0.752 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.177 0.823 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 12.409 -26.356 2.865 29.272 hybrid contribution -0.056 0.467 0.206 0.513 sum 12.353 -25.889 3.071 28.849 Atomic orbital electron populations 1.20559 0.82512 0.96426 0.97156 1.44039 1.02264 1.01236 1.83947 1.19521 0.98482 0.86158 1.35160 0.90456 1.25943 0.98551 1.02380 0.98349 1.70305 1.19420 1.27233 1.41204 0.85278 0.77390 0.79169 0.78161 1.19470 1.22404 1.20497 1.21280 0.99245 0.89035 0.90850 1.23407 0.76250 0.79703 0.94793 1.90705 1.51645 1.54858 1.48001 1.46245 1.59230 1.24098 1.08173 1.19994 0.98817 0.92484 0.84643 1.19843 0.94246 0.93930 1.03736 1.21029 1.01054 0.90341 0.95512 1.21604 0.92187 1.00725 1.06824 1.18947 0.91148 0.83339 1.01188 1.86405 1.35544 1.12390 1.89188 1.19275 0.74910 0.79409 0.74716 1.93314 1.73731 1.96191 1.51373 1.93316 1.71394 1.50174 1.96297 1.93310 1.73644 1.96198 1.51564 1.20636 1.01817 0.88016 1.03538 1.21159 0.93010 0.98268 0.95547 0.99007 0.95717 0.94480 0.94623 0.88500 0.87703 0.75185 0.92142 0.92204 0.83859 0.84158 0.82325 0.82984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.21 9.01 127.77 1.15 10.36 16 2 N -0.59 -30.38 2.41 -731.31 -1.77 -32.14 16 3 C -0.26 -14.78 9.67 84.03 0.81 -13.97 16 4 H 0.08 4.09 7.84 -2.91 -0.02 4.07 16 5 C -0.06 -3.35 5.13 84.86 0.44 -2.92 16 6 N -0.94 -58.90 10.59 21.65 0.23 -58.67 16 7 Si 0.97 46.59 29.57 68.60 2.03 48.62 16 8 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 9 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 C 0.13 4.76 6.19 85.63 0.53 5.29 16 12 C 0.47 18.56 7.90 87.66 0.69 19.25 16 13 O -0.57 -30.43 16.43 -3.03 -0.05 -30.48 16 14 N -0.72 -19.31 5.55 -466.80 -2.59 -21.90 16 15 C 0.16 4.08 5.80 85.63 0.50 4.57 16 16 C -0.12 -2.11 5.25 -19.85 -0.10 -2.21 16 17 C -0.06 -1.01 9.69 22.25 0.22 -0.79 16 18 C -0.19 -3.11 8.26 22.37 0.18 -2.93 16 19 C 0.10 1.56 6.48 22.51 0.15 1.70 16 20 O -0.32 -5.02 10.37 -92.37 -0.96 -5.97 16 21 C 0.61 8.62 3.42 113.37 0.39 9.01 16 22 F -0.16 -2.36 15.56 44.97 0.70 -1.66 16 23 F -0.13 -1.79 17.53 44.97 0.79 -1.00 16 24 F -0.17 -2.39 15.56 44.97 0.70 -1.69 16 25 C -0.12 -1.73 9.99 22.36 0.22 -1.50 16 26 C -0.06 -0.94 9.69 22.25 0.22 -0.72 16 27 H -0.01 -0.51 7.42 -2.39 -0.02 -0.53 16 28 H 0.02 1.34 7.18 -2.39 -0.02 1.33 16 29 H 0.04 1.56 7.85 -2.39 -0.02 1.54 16 30 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.10 3.18 8.03 -2.39 -0.02 3.17 16 32 H 0.11 3.13 7.86 -2.39 -0.02 3.11 16 33 H 0.41 8.02 8.46 -92.71 -0.78 7.24 16 34 H 0.06 1.67 8.09 -2.39 -0.02 1.65 16 35 H 0.06 1.64 8.08 -2.39 -0.02 1.62 16 36 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.14 2.00 5.10 -2.91 -0.01 1.98 16 38 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -77.00 349.79 4.80 -72.20 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.33 Total: 7.55 kcal Atomic # 6 Polarization: 19.77 SS G_CDS: 5.39 Total: 25.15 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -4.13 Total: -112.71 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -1.01 Total: -36.45 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 2.19 Total: -4.35 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -77.00 4.80 -72.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.284 kcal (2) G-P(sol) polarization free energy of solvation -76.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds