Wall clock time and date at job start Tue Mar 31 2020 16:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99819 * 2 1 4 4 C 1.50695 * 109.47421 * 270.00767 * 3 2 1 5 5 H 1.07996 * 120.00363 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99816 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00319 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99686 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.46850 * 90.00366 * 8 6 4 10 10 H 1.48501 * 109.46976 * 210.00186 * 8 6 4 11 11 H 1.48494 * 109.47456 * 330.00419 * 8 6 4 12 12 C 1.34777 * 120.00100 * 180.02562 * 2 1 3 13 13 O 1.21551 * 119.99617 * 184.31381 * 12 2 1 14 14 C 1.47837 * 120.00088 * 4.31301 * 12 2 1 15 15 C 1.39580 * 120.14656 * 327.95883 * 14 12 2 16 16 C 1.37953 * 119.85607 * 180.25466 * 15 14 12 17 17 C 1.38358 * 120.14395 * 359.47348 * 16 15 14 18 18 C 1.50703 * 119.85852 * 180.27440 * 17 16 15 19 19 S 1.81006 * 109.47040 * 89.99987 * 18 17 16 20 20 C 1.76196 * 99.99893 * 180.02562 * 19 18 17 21 21 N 1.31641 * 126.08836 * 359.69581 * 20 19 18 22 22 C 1.33345 * 109.69281 * 179.82690 * 21 20 19 23 23 N 1.30594 * 109.13677 * 0.43850 * 22 21 20 24 24 N 1.35075 * 126.08252 * 179.97438 * 20 19 18 25 25 H 0.96995 * 126.84144 * 0.02562 * 24 20 19 26 26 C 1.38367 * 120.29461 * 0.30166 * 17 16 15 27 27 C 1.37961 * 120.13983 * 359.94928 * 26 17 16 28 28 H 1.09000 * 109.46859 * 274.74686 * 1 2 3 29 29 H 1.08993 * 109.47204 * 34.75049 * 1 2 3 30 30 H 1.08999 * 109.47123 * 154.75048 * 1 2 3 31 31 H 1.09002 * 109.46980 * 30.01146 * 3 2 1 32 32 H 1.09002 * 109.46977 * 150.00111 * 3 2 1 33 33 H 0.97002 * 120.00088 * 179.97438 * 7 6 4 34 34 H 1.07997 * 120.07224 * 0.02562 * 15 14 12 35 35 H 1.07997 * 119.93131 * 179.75219 * 16 15 14 36 36 H 1.08992 * 109.47429 * 210.00580 * 18 17 16 37 37 H 1.09001 * 109.46997 * 330.00682 * 18 17 16 38 38 H 1.08006 * 125.43199 * 180.17034 * 22 21 20 39 39 H 1.07998 * 119.92933 * 179.97438 * 26 17 16 40 40 H 1.07995 * 120.06972 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4485 1.7039 -1.4207 5 1 2.0980 1.0961 -2.2417 6 6 3.1258 2.8782 -1.6726 7 7 3.5532 3.6183 -0.6730 8 14 3.4376 3.4173 -3.4337 9 1 2.3074 4.2596 -3.9010 10 1 4.6975 4.2008 -3.4959 11 1 3.5557 2.2202 -4.3044 12 6 2.1390 -1.1672 -0.0005 13 8 3.3519 -1.1686 0.0787 14 6 1.4030 -2.4457 -0.0974 15 6 0.1274 -2.5640 0.4570 16 6 -0.5518 -3.7613 0.3677 17 6 0.0241 -4.8403 -0.2791 18 6 -0.7263 -6.1435 -0.3782 19 16 -1.7212 -6.1533 -1.8903 20 6 -2.4691 -7.7428 -1.7540 21 7 -2.2798 -8.6080 -0.7800 22 6 -3.0092 -9.7019 -1.0026 23 7 -3.6661 -9.5580 -2.1221 24 7 -3.3348 -8.2927 -2.6331 25 1 -3.6621 -7.8934 -3.4542 26 6 1.2863 -4.7285 -0.8349 27 6 1.9784 -3.5382 -0.7481 28 1 -0.3633 0.0850 1.0242 29 1 -0.3633 0.8443 -0.5857 30 1 -0.3633 -0.9295 -0.4384 31 1 1.6085 2.0283 0.5140 32 1 3.1499 1.1384 0.5138 33 1 4.0300 4.4442 -0.8502 34 1 -0.3252 -1.7210 0.9579 35 1 -1.5372 -3.8554 0.7997 36 1 -0.0166 -6.9703 -0.4048 37 1 -1.3797 -6.2533 0.4873 38 1 -3.0469 -10.5704 -0.3617 39 1 1.7304 -5.5746 -1.3381 40 1 2.9633 -3.4520 -1.1827 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078343122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:53 Heat of formation + Delta-G solvation = 95.603414 kcal Electronic energy + Delta-G solvation = -24186.057615 eV Core-core repulsion = 20515.699474 eV Total energy + Delta-G solvation = -3670.358142 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.35710 -40.11032 -38.16470 -35.04441 -33.42351 -32.94036 -32.43589 -31.71142 -31.09930 -28.46557 -27.26970 -25.98326 -23.93893 -23.26737 -22.63292 -22.48155 -21.60267 -19.33739 -19.22674 -16.90792 -16.78216 -16.56211 -16.15674 -15.97176 -15.63275 -15.24036 -15.01115 -14.90197 -14.60617 -14.26904 -14.10193 -13.70249 -13.12419 -12.96577 -12.84793 -12.57295 -12.33416 -12.13963 -11.99356 -11.53441 -11.29908 -11.21647 -10.97835 -10.88145 -10.78940 -10.71794 -10.62190 -10.58184 -10.19714 -9.68585 -9.13089 -8.99717 -8.73746 -8.46722 -8.30711 -7.72164 -6.07758 -4.12923 0.25871 0.98630 0.99089 1.30711 1.67298 2.38017 2.42564 3.25767 3.28235 3.35059 3.39470 3.75840 4.03535 4.14686 4.23798 4.36563 4.41877 4.48915 4.85434 4.88671 5.02477 5.21787 5.26770 5.29472 5.46839 5.59138 5.61341 5.75731 5.79894 5.90127 5.93173 6.16809 6.19037 6.31633 6.33511 6.40294 6.77601 7.01359 7.39195 7.44219 7.46284 7.88211 8.18399 8.30922 8.83401 8.99122 9.52186 11.00290 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.024270 B = 0.002109 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.410775 B =13275.069012 C =13703.296928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.592 5.592 3 C 0.244 3.756 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.542 3.458 13 O -0.535 6.535 14 C -0.102 4.102 15 C -0.104 4.104 16 C -0.107 4.107 17 C -0.081 4.081 18 C -0.054 4.054 19 S 0.018 5.982 20 C 0.258 3.742 21 N -0.543 5.543 22 C 0.213 3.787 23 N -0.313 5.313 24 N -0.465 5.465 25 H 0.445 0.555 26 C -0.105 4.105 27 C -0.067 4.067 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.148 0.852 35 H 0.130 0.870 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.222 0.778 39 H 0.130 0.870 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.044 -22.211 0.093 26.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.323 5.323 3 C 0.125 3.875 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.329 3.671 13 O -0.413 6.413 14 C -0.106 4.106 15 C -0.123 4.123 16 C -0.127 4.127 17 C -0.084 4.084 18 C -0.202 4.202 19 S 0.248 5.752 20 C -0.127 4.127 21 N -0.276 5.276 22 C -0.092 4.092 23 N -0.143 5.143 24 N -0.186 5.186 25 H 0.291 0.709 26 C -0.125 4.125 27 C -0.086 4.086 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.165 0.835 35 H 0.148 0.852 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.238 0.762 39 H 0.148 0.852 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.718 -21.768 -0.644 26.284 hybrid contribution 0.019 -0.230 -0.587 0.631 sum -14.698 -21.998 -1.232 26.485 Atomic orbital electron populations 1.22288 0.81712 1.03338 1.00567 1.48076 1.06225 1.07675 1.70299 1.19356 0.92713 0.77746 0.97701 1.21417 1.36773 1.06382 0.92175 0.92399 1.24944 0.95288 0.96362 0.97521 1.69929 1.38234 1.14300 1.30756 0.86480 0.77712 0.78610 0.84536 1.20604 1.21043 1.19870 1.18193 0.87245 0.83387 0.78287 1.90758 1.13429 1.87011 1.50150 1.20390 0.94979 0.95365 0.99860 1.21972 0.93546 0.98077 0.98657 1.20982 1.00176 0.92059 0.99512 1.19278 0.94957 0.93571 1.00570 1.22517 1.01092 0.99286 0.97342 1.86312 1.51933 1.04850 1.32059 1.26580 0.94831 1.01207 0.90130 1.71062 1.27980 1.02656 1.25875 1.26076 0.91889 0.97656 0.93607 1.77947 1.25001 0.97175 1.14158 1.47920 1.35765 1.13020 1.21929 0.70863 1.20992 0.94033 0.97938 0.99548 1.21262 0.99883 0.91155 0.96309 0.93141 0.90884 0.90577 0.94746 0.93507 0.92650 0.83471 0.85243 0.87253 0.87237 0.76190 0.85229 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 8.81 59.85 0.53 1.51 16 2 N -0.59 -12.44 2.86 -184.08 -0.53 -12.96 16 3 C 0.24 6.31 5.22 -5.20 -0.03 6.29 16 4 C -0.53 -14.84 9.39 -34.44 -0.32 -15.17 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 12 C 0.54 11.39 7.44 -12.33 -0.09 11.30 16 13 O -0.54 -13.54 16.32 5.32 0.09 -13.46 16 14 C -0.10 -1.60 5.47 -104.97 -0.57 -2.18 16 15 C -0.10 -1.27 7.44 -39.19 -0.29 -1.56 16 16 C -0.11 -1.04 9.68 -39.64 -0.38 -1.43 16 17 C -0.08 -0.77 5.14 -104.53 -0.54 -1.31 16 18 C -0.05 -0.42 5.33 36.01 0.19 -0.23 16 19 S 0.02 0.14 22.29 -107.50 -2.40 -2.26 16 20 C 0.26 2.27 8.31 -89.39 -0.74 1.53 16 21 N -0.54 -5.22 10.57 -14.69 -0.16 -5.38 16 22 C 0.21 1.78 13.02 -91.82 -1.20 0.58 16 23 N -0.31 -2.92 12.78 29.29 0.37 -2.55 16 24 N -0.47 -3.73 7.47 30.45 0.23 -3.50 16 25 H 0.44 2.29 8.96 -182.36 -1.63 0.66 16 26 C -0.11 -1.12 9.68 -39.64 -0.38 -1.51 16 27 C -0.07 -0.94 9.60 -39.18 -0.38 -1.32 16 28 H 0.05 0.64 7.45 -51.93 -0.39 0.25 16 29 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 30 H 0.08 0.98 4.70 -51.93 -0.24 0.74 16 31 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 32 H 0.05 1.37 7.37 -51.93 -0.38 0.98 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.15 1.60 4.82 -52.49 -0.25 1.35 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.11 0.81 8.08 -51.92 -0.42 0.39 16 37 H 0.11 0.78 8.08 -51.92 -0.42 0.37 16 38 H 0.22 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.14 1.98 7.96 -52.49 -0.42 1.56 16 LS Contribution 360.32 15.07 5.43 5.43 Total: -1.00 -35.36 360.32 -11.36 -46.72 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -5.81 Total: -1.27 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -4.30 Total: -1.84 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.66 Total: -49.95 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.40 Total: -2.26 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.36 -11.36 -46.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078343122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.323 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds