Wall clock time and date at job start Tue Mar 31 2020 16:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99819 * 2 1 4 4 C 1.50695 * 109.47421 * 270.00767 * 3 2 1 5 5 H 1.07996 * 120.00363 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99816 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00319 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99686 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.46850 * 90.00366 * 8 6 4 10 10 H 1.48501 * 109.46976 * 210.00186 * 8 6 4 11 11 H 1.48494 * 109.47456 * 330.00419 * 8 6 4 12 12 C 1.34777 * 120.00100 * 180.02562 * 2 1 3 13 13 O 1.21551 * 119.99617 * 184.31381 * 12 2 1 14 14 C 1.47837 * 120.00088 * 4.31301 * 12 2 1 15 15 C 1.39580 * 120.14656 * 327.95883 * 14 12 2 16 16 C 1.37953 * 119.85607 * 180.25466 * 15 14 12 17 17 C 1.38358 * 120.14395 * 359.47348 * 16 15 14 18 18 C 1.50703 * 119.85852 * 180.27440 * 17 16 15 19 19 S 1.81006 * 109.47040 * 89.99987 * 18 17 16 20 20 C 1.76196 * 99.99893 * 180.02562 * 19 18 17 21 21 N 1.31641 * 126.08836 * 359.69581 * 20 19 18 22 22 C 1.33345 * 109.69281 * 179.82690 * 21 20 19 23 23 N 1.30594 * 109.13677 * 0.43850 * 22 21 20 24 24 N 1.35075 * 126.08252 * 179.97438 * 20 19 18 25 25 H 0.96995 * 126.84144 * 0.02562 * 24 20 19 26 26 C 1.38367 * 120.29461 * 0.30166 * 17 16 15 27 27 C 1.37961 * 120.13983 * 359.94928 * 26 17 16 28 28 H 1.09000 * 109.46859 * 274.74686 * 1 2 3 29 29 H 1.08993 * 109.47204 * 34.75049 * 1 2 3 30 30 H 1.08999 * 109.47123 * 154.75048 * 1 2 3 31 31 H 1.09002 * 109.46980 * 30.01146 * 3 2 1 32 32 H 1.09002 * 109.46977 * 150.00111 * 3 2 1 33 33 H 0.97002 * 120.00088 * 179.97438 * 7 6 4 34 34 H 1.07997 * 120.07224 * 0.02562 * 15 14 12 35 35 H 1.07997 * 119.93131 * 179.75219 * 16 15 14 36 36 H 1.08992 * 109.47429 * 210.00580 * 18 17 16 37 37 H 1.09001 * 109.46997 * 330.00682 * 18 17 16 38 38 H 1.08006 * 125.43199 * 180.17034 * 22 21 20 39 39 H 1.07998 * 119.92933 * 179.97438 * 26 17 16 40 40 H 1.07995 * 120.06972 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4485 1.7039 -1.4207 5 1 2.0980 1.0961 -2.2417 6 6 3.1258 2.8782 -1.6726 7 7 3.5532 3.6183 -0.6730 8 14 3.4376 3.4173 -3.4337 9 1 2.3074 4.2596 -3.9010 10 1 4.6975 4.2008 -3.4959 11 1 3.5557 2.2202 -4.3044 12 6 2.1390 -1.1672 -0.0005 13 8 3.3519 -1.1686 0.0787 14 6 1.4030 -2.4457 -0.0974 15 6 0.1274 -2.5640 0.4570 16 6 -0.5518 -3.7613 0.3677 17 6 0.0241 -4.8403 -0.2791 18 6 -0.7263 -6.1435 -0.3782 19 16 -1.7212 -6.1533 -1.8903 20 6 -2.4691 -7.7428 -1.7540 21 7 -2.2798 -8.6080 -0.7800 22 6 -3.0092 -9.7019 -1.0026 23 7 -3.6661 -9.5580 -2.1221 24 7 -3.3348 -8.2927 -2.6331 25 1 -3.6621 -7.8934 -3.4542 26 6 1.2863 -4.7285 -0.8349 27 6 1.9784 -3.5382 -0.7481 28 1 -0.3633 0.0850 1.0242 29 1 -0.3633 0.8443 -0.5857 30 1 -0.3633 -0.9295 -0.4384 31 1 1.6085 2.0283 0.5140 32 1 3.1499 1.1384 0.5138 33 1 4.0300 4.4442 -0.8502 34 1 -0.3252 -1.7210 0.9579 35 1 -1.5372 -3.8554 0.7997 36 1 -0.0166 -6.9703 -0.4048 37 1 -1.3797 -6.2533 0.4873 38 1 -3.0469 -10.5704 -0.3617 39 1 1.7304 -5.5746 -1.3381 40 1 2.9633 -3.4520 -1.1827 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078343122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:53 Heat of formation + Delta-G solvation = 73.710185 kcal Electronic energy + Delta-G solvation = -24187.006977 eV Core-core repulsion = 20515.699474 eV Total energy + Delta-G solvation = -3671.307504 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.95728 -41.37498 -39.46773 -36.76770 -34.96205 -33.99925 -33.49901 -32.34280 -32.09818 -30.04887 -28.49612 -27.48211 -25.25838 -24.37901 -23.60866 -23.07521 -22.75309 -20.66433 -19.95813 -18.71829 -18.20185 -17.56009 -17.39076 -16.72043 -16.66640 -16.48770 -16.13540 -15.90308 -15.71522 -15.43836 -15.34591 -14.63780 -14.43332 -14.26366 -13.91318 -13.78244 -13.57400 -13.47052 -13.30087 -12.98004 -12.84232 -12.59924 -12.46312 -12.24898 -11.94761 -11.79857 -11.73569 -11.46363 -11.34257 -11.25842 -10.75233 -10.65672 -9.92671 -9.75464 -9.45858 -8.89071 -8.24242 -6.39424 -0.50788 0.17928 0.37431 0.40535 0.98453 1.36056 1.39143 1.49477 1.77812 1.85648 1.94018 2.28065 2.41772 2.84769 3.05229 3.41936 3.65724 3.72542 3.76158 3.77501 4.00005 4.17987 4.30610 4.43141 4.58568 4.62936 4.64737 4.81816 4.93346 4.97035 5.03060 5.06862 5.17911 5.28814 5.35813 5.42558 5.45568 5.52472 5.78707 5.85194 5.88607 6.02889 6.65027 6.71157 6.84476 7.23161 7.38507 8.82929 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.024270 B = 0.002109 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.410775 B =13275.069012 C =13703.296928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.600 5.600 3 C 0.257 3.743 4 C -0.545 4.545 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.926 5.926 8 Si 0.969 3.031 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.534 3.466 13 O -0.598 6.598 14 C -0.130 4.130 15 C -0.100 4.100 16 C -0.095 4.095 17 C -0.064 4.064 18 C -0.054 4.054 19 S 0.035 5.965 20 C 0.252 3.748 21 N -0.561 5.561 22 C 0.210 3.790 23 N -0.336 5.336 24 N -0.463 5.463 25 H 0.455 0.545 26 C -0.099 4.099 27 C -0.083 4.083 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.029 0.971 32 H 0.000 1.000 33 H 0.268 0.732 34 H 0.162 0.838 35 H 0.168 0.832 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.251 0.749 39 H 0.154 0.846 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.830 -24.159 -0.618 30.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.329 5.329 3 C 0.136 3.864 4 C -0.584 4.584 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.566 5.566 8 Si 0.793 3.207 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.323 3.677 13 O -0.480 6.480 14 C -0.134 4.134 15 C -0.118 4.118 16 C -0.114 4.114 17 C -0.066 4.066 18 C -0.202 4.202 19 S 0.265 5.735 20 C -0.134 4.134 21 N -0.294 5.294 22 C -0.095 4.095 23 N -0.166 5.166 24 N -0.185 5.185 25 H 0.303 0.697 26 C -0.118 4.118 27 C -0.103 4.103 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.047 0.953 32 H 0.018 0.982 33 H 0.077 0.923 34 H 0.179 0.821 35 H 0.185 0.815 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.267 0.733 39 H 0.171 0.829 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.569 -23.721 -1.365 29.550 hybrid contribution 0.819 0.250 -0.330 0.918 sum -16.749 -23.471 -1.695 28.884 Atomic orbital electron populations 1.22636 0.78037 1.04683 1.02833 1.48075 1.08532 1.06175 1.70167 1.18830 0.91279 0.80016 0.96286 1.21669 1.37187 1.06664 0.92861 0.92941 1.25880 0.94799 0.96370 1.02136 1.70048 1.38735 1.14755 1.33048 0.85390 0.78167 0.78208 0.78899 1.18633 1.20550 1.19832 1.19095 0.86925 0.85024 0.76615 1.90700 1.16312 1.88107 1.52921 1.20006 0.96699 0.93000 1.03713 1.22067 0.91927 0.99775 0.98006 1.21355 1.01202 0.90639 0.98252 1.19500 0.94230 0.94331 0.98585 1.22519 1.01398 0.98126 0.98136 1.86303 1.51513 1.04074 1.31564 1.26741 0.94932 1.01533 0.90213 1.71061 1.28684 1.03229 1.26452 1.26728 0.91015 0.98208 0.93568 1.77915 1.25905 0.97914 1.14889 1.47924 1.35577 1.12741 1.22280 0.69699 1.21180 0.94351 0.97090 0.99197 1.21218 0.99663 0.92239 0.97137 0.89950 0.91529 0.87615 0.95273 0.98189 0.92307 0.82124 0.81495 0.86586 0.85878 0.73327 0.82866 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.75 8.81 127.77 1.13 2.88 16 2 N -0.60 -26.12 2.86 -854.59 -2.44 -28.57 16 3 C 0.26 14.08 5.22 85.63 0.45 14.53 16 4 C -0.55 -31.76 9.39 25.60 0.24 -31.52 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.43 5.46 84.66 0.46 0.89 16 7 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 8 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 9 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.53 23.58 7.44 86.78 0.65 24.23 16 13 O -0.60 -32.70 16.32 -3.88 -0.06 -32.76 16 14 C -0.13 -4.11 5.47 -20.09 -0.11 -4.22 16 15 C -0.10 -2.17 7.44 22.53 0.17 -2.00 16 16 C -0.10 -1.44 9.68 22.23 0.22 -1.23 16 17 C -0.06 -0.98 5.14 -19.80 -0.10 -1.08 16 18 C -0.05 -0.60 5.33 71.24 0.38 -0.22 16 19 S 0.04 0.42 22.29 -56.49 -1.26 -0.84 16 20 C 0.25 3.72 8.31 179.92 1.50 5.22 16 21 N -0.56 -9.22 10.57 -200.40 -2.12 -11.34 16 22 C 0.21 2.99 13.02 180.77 2.35 5.35 16 23 N -0.34 -5.61 12.78 -61.25 -0.78 -6.39 16 24 N -0.46 -6.42 7.47 -57.58 -0.43 -6.85 16 25 H 0.45 3.81 8.96 -213.12 -1.91 1.90 16 26 C -0.10 -1.89 9.68 22.23 0.22 -1.67 16 27 C -0.08 -2.35 9.60 22.53 0.22 -2.13 16 28 H 0.08 1.91 7.45 -2.39 -0.02 1.89 16 29 H 0.07 2.05 8.11 -2.39 -0.02 2.04 16 30 H 0.11 2.50 4.70 -2.39 -0.01 2.49 16 31 H 0.03 1.59 8.07 -2.39 -0.02 1.58 16 32 H 0.00 0.00 7.37 -2.39 -0.02 -0.02 16 33 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 34 H 0.16 3.00 4.82 -2.91 -0.01 2.98 16 35 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.12 1.26 8.08 -2.40 -0.02 1.24 16 37 H 0.12 1.17 8.08 -2.39 -0.02 1.15 16 38 H 0.25 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 40 H 0.12 3.63 7.96 -2.91 -0.02 3.60 16 Total: -1.00 -81.94 360.32 2.15 -79.79 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -0.81 Total: 6.81 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 7.75 Total: 9.00 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -5.49 Total: -109.01 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.06 Total: -32.76 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -1.26 Total: -0.84 kcal Total: -81.94 2.15 -79.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078343122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.499 kcal (2) G-P(sol) polarization free energy of solvation -81.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds