Wall clock time and date at job start Tue Mar 31 2020 16:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 113.99486 * 2 1 4 4 C 1.53000 * 109.47000 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47410 * 64.99930 * 4 3 2 6 6 C 1.46503 * 119.99707 * 270.00421 * 5 4 3 7 7 C 1.50697 * 109.46647 * 269.99638 * 6 5 4 8 8 H 1.07999 * 120.00681 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99764 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00098 * 0.02562 * 9 7 6 11 11 Si 1.86809 * 120.00125 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46753 * 60.00162 * 11 9 7 13 13 H 1.48498 * 109.46992 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.46986 * 300.00410 * 11 9 7 15 15 C 1.34773 * 119.99898 * 89.99686 * 5 4 3 16 16 O 1.21596 * 119.99598 * 179.97438 * 15 5 4 17 17 N 1.34773 * 120.00427 * 0.02562 * 15 5 4 18 18 C 1.40186 * 120.00107 * 184.43699 * 17 15 5 19 19 C 1.38783 * 120.03796 * 325.33426 * 18 17 15 20 20 C 1.38326 * 119.95275 * 180.02562 * 19 18 17 21 21 F 1.35097 * 119.97984 * 180.02562 * 20 19 18 22 22 C 1.38677 * 120.03878 * 359.73132 * 20 19 18 23 23 F 1.35095 * 119.95747 * 180.27073 * 22 20 19 24 24 C 1.38411 * 120.08342 * 0.55140 * 22 20 19 25 25 C 1.38321 * 120.04269 * 359.44554 * 24 22 20 26 26 F 1.35107 * 120.02054 * 180.30048 * 25 24 22 27 27 H 1.08999 * 109.46969 * 60.00165 * 1 2 3 28 28 H 1.08998 * 109.46576 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47289 * 299.99740 * 1 2 3 30 30 H 1.09005 * 109.47546 * 59.99908 * 3 2 1 31 31 H 1.09004 * 109.47018 * 299.99834 * 3 2 1 32 32 H 1.09002 * 109.47246 * 304.99648 * 4 3 2 33 33 H 1.09001 * 109.47275 * 185.00094 * 4 3 2 34 34 H 1.08996 * 109.47028 * 29.99572 * 6 5 4 35 35 H 1.08997 * 109.47223 * 150.00030 * 6 5 4 36 36 H 0.97004 * 120.00245 * 180.02562 * 10 9 7 37 37 H 0.97003 * 120.00044 * 4.43023 * 17 15 5 38 38 H 1.07996 * 120.02751 * 0.02562 * 19 18 17 39 39 H 1.07995 * 119.97814 * 179.72551 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.1053 -0.8920 -1.3427 7 6 5.5010 -1.2975 -0.9448 8 1 6.2196 -0.5457 -0.6536 9 6 5.8607 -2.6285 -0.9525 10 7 4.9859 -3.5441 -1.3076 11 14 7.5912 -3.1313 -0.4600 12 1 7.8547 -2.6966 0.9353 13 1 7.7228 -4.6076 -0.5523 14 1 8.5716 -2.4894 -1.3720 15 6 4.2614 1.3339 -2.3218 16 8 4.6273 0.8191 -3.3608 17 7 4.1426 2.6738 -2.2389 18 6 4.3494 3.4675 -3.3758 19 6 5.3004 3.0987 -4.3169 20 6 5.5033 3.8834 -5.4378 21 9 6.4285 3.5246 -6.3546 22 6 4.7534 5.0350 -5.6241 23 9 4.9492 5.7972 -6.7221 24 6 3.8087 5.4074 -4.6836 25 6 3.6028 4.6252 -3.5615 26 9 2.6763 4.9860 -2.6468 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6885 1.8465 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8515 0.5684 0.8410 33 1 3.9784 2.1766 0.0889 34 1 3.3853 -1.3628 -0.6733 35 1 3.9121 -1.2114 -2.3668 36 1 5.2389 -4.4806 -1.3127 37 1 3.9139 3.0890 -1.3926 38 1 5.8815 2.1996 -4.1743 39 1 3.2287 6.3069 -4.8282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078570540.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:20 Heat of formation + Delta-G solvation = -184.812256 kcal Electronic energy + Delta-G solvation = -28874.052914 eV Core-core repulsion = 24174.632673 eV Total energy + Delta-G solvation = -4699.420240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.60995 -50.12454 -49.68138 -41.83020 -39.71111 -38.74510 -36.68249 -35.95567 -34.65274 -31.76916 -31.15324 -30.49295 -28.67330 -27.11810 -25.47365 -24.60699 -24.12724 -23.49797 -21.24287 -19.97998 -19.33964 -18.99431 -18.67402 -18.38871 -17.75901 -17.57895 -17.27303 -16.89237 -16.76701 -16.63826 -16.36471 -16.31170 -16.07687 -15.72412 -15.66001 -15.60064 -15.17241 -14.90343 -14.56349 -14.30354 -13.69489 -13.67396 -13.37611 -13.09886 -13.06000 -12.97763 -12.80736 -12.75634 -12.53788 -12.15931 -11.97668 -11.71308 -11.50260 -11.11745 -10.60155 -10.54222 -10.12179 -9.62370 -9.19907 -8.16712 -6.31105 -0.46513 -0.29288 1.38169 1.42084 1.43744 1.50887 1.83034 2.22090 2.40733 2.50662 2.78244 2.82804 2.93842 3.13376 3.17065 3.33792 3.75423 4.06997 4.11418 4.21364 4.29732 4.37663 4.43163 4.53617 4.53916 4.60228 4.68270 4.82762 4.86989 4.90074 5.04354 5.14151 5.31549 5.55169 5.58388 5.76576 5.94900 6.10990 6.34031 6.77789 6.92388 7.33042 7.50445 8.89930 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.010591 B = 0.004077 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.153138 B = 6866.373115 C = 8965.825529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.415 6.415 3 C 0.044 3.956 4 C 0.102 3.898 5 N -0.599 5.599 6 C 0.287 3.713 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.964 3.036 12 H -0.260 1.260 13 H -0.281 1.281 14 H -0.279 1.279 15 C 0.696 3.304 16 O -0.612 6.612 17 N -0.672 5.672 18 C 0.158 3.842 19 C -0.121 4.121 20 C 0.073 3.927 21 F -0.133 7.133 22 C 0.077 3.923 23 F -0.122 7.122 24 C -0.116 4.116 25 C 0.101 3.899 26 F -0.116 7.116 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.034 0.966 35 H -0.007 1.007 36 H 0.266 0.734 37 H 0.424 0.576 38 H 0.145 0.855 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.227 21.303 1.201 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.334 6.334 3 C -0.034 4.034 4 C -0.021 4.021 5 N -0.331 5.331 6 C 0.166 3.834 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.189 4.189 10 N -0.567 5.567 11 Si 0.789 3.211 12 H -0.185 1.185 13 H -0.206 1.206 14 H -0.204 1.204 15 C 0.398 3.602 16 O -0.491 6.491 17 N -0.323 5.323 18 C 0.060 3.940 19 C -0.143 4.143 20 C 0.052 3.948 21 F -0.111 7.111 22 C 0.056 3.944 23 F -0.101 7.101 24 C -0.135 4.135 25 C 0.078 3.922 26 F -0.094 7.094 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.052 0.948 35 H 0.011 0.989 36 H 0.074 0.926 37 H 0.265 0.735 38 H 0.163 0.837 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.919 20.484 0.518 21.627 hybrid contribution 0.677 -0.571 0.142 0.897 sum -6.242 19.913 0.660 20.879 Atomic orbital electron populations 1.22851 0.80014 1.03111 1.00768 1.88040 1.21128 1.28722 1.95518 1.23189 0.93319 0.85028 1.01833 1.21895 0.93342 0.99922 0.86920 1.47368 1.67244 1.07859 1.10660 1.18636 0.95623 0.73558 0.95570 1.21728 0.98274 0.92571 1.45582 0.92680 1.25802 1.01552 0.96430 0.95157 1.70063 1.36522 1.01420 1.48699 0.85522 0.79344 0.77071 0.79160 1.18478 1.20617 1.20444 1.16046 0.78845 0.81034 0.84291 1.90882 1.54312 1.73149 1.30780 1.42527 1.73931 1.04133 1.11747 1.17308 0.95094 0.91641 0.89936 1.20993 0.98768 1.00971 0.93566 1.17550 0.92167 0.95448 0.89661 1.91521 1.63451 1.91637 1.64516 1.17133 0.99583 0.90587 0.87081 1.91549 1.94246 1.73825 1.50473 1.20939 0.98895 1.02688 0.91009 1.16814 0.90432 0.95110 0.89846 1.91553 1.62404 1.91200 1.64249 0.93981 0.90055 0.91826 0.88612 0.93302 0.89384 0.86470 0.94766 0.98911 0.92564 0.73467 0.83708 0.78195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -13.44 9.53 -148.98 -1.42 -14.86 16 3 C 0.04 1.07 6.28 71.98 0.45 1.52 16 4 C 0.10 2.90 5.62 86.38 0.49 3.39 16 5 N -0.60 -24.56 2.42 -844.20 -2.04 -26.60 16 6 C 0.29 15.46 4.98 85.63 0.43 15.89 16 7 C -0.54 -31.00 9.39 25.60 0.24 -30.76 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.01 0.56 5.46 84.65 0.46 1.02 16 10 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 11 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 12 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 15 C 0.70 28.12 8.13 179.06 1.45 29.58 16 16 O -0.61 -30.75 13.34 -4.02 -0.05 -30.80 16 17 N -0.67 -19.04 5.11 -316.94 -1.62 -20.66 16 18 C 0.16 4.22 6.32 38.12 0.24 4.46 16 19 C -0.12 -3.73 8.68 22.42 0.19 -3.54 16 20 C 0.07 1.99 7.30 22.40 0.16 2.16 16 21 F -0.13 -4.03 17.18 44.97 0.77 -3.26 16 22 C 0.08 1.66 7.30 22.42 0.16 1.82 16 23 F -0.12 -2.64 17.18 44.97 0.77 -1.87 16 24 C -0.12 -1.86 10.00 22.33 0.22 -1.64 16 25 C 0.10 1.97 7.31 22.47 0.16 2.13 16 26 F -0.12 -1.98 16.95 44.97 0.76 -1.22 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.09 2.75 8.07 -2.39 -0.02 2.73 16 33 H 0.12 2.24 6.30 -2.39 -0.02 2.23 16 34 H 0.03 1.93 7.11 -2.39 -0.02 1.92 16 35 H -0.01 -0.46 7.42 -2.39 -0.02 -0.47 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.42 8.72 6.36 -92.71 -0.59 8.13 16 38 H 0.15 5.54 6.19 -2.91 -0.02 5.52 16 39 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -75.76 349.94 5.93 -69.83 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.53 Total: 10.76 kcal Atomic # 6 Polarization: 22.03 SS G_CDS: 5.92 Total: 27.95 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -3.38 Total: -103.53 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -1.47 Total: -45.66 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 2.31 Total: -6.35 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -75.76 5.93 -69.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078570540.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.984 kcal (2) G-P(sol) polarization free energy of solvation -75.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds