Wall clock time and date at job start Tue Mar 31 2020 16:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46971 * 2 1 4 4 C 1.46497 * 120.00174 * 277.51451 * 3 2 1 5 5 C 1.50692 * 109.47072 * 269.99705 * 4 3 2 6 6 H 1.08003 * 120.00239 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99848 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99980 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99909 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47172 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47329 * 120.00167 * 9 7 5 12 12 H 1.48498 * 109.46801 * 240.00273 * 9 7 5 13 13 C 1.34776 * 119.99587 * 97.51180 * 3 2 1 14 14 O 1.21582 * 120.00135 * 185.70402 * 13 3 2 15 15 C 1.47613 * 120.00263 * 5.70625 * 13 3 2 16 16 C 1.40284 * 120.50041 * 134.57530 * 15 13 3 17 17 C 1.37952 * 118.35887 * 180.02562 * 16 15 13 18 18 C 1.39163 * 119.26549 * 359.97438 * 17 16 15 19 19 O 1.35502 * 119.52807 * 180.02562 * 18 17 16 20 20 C 1.42903 * 117.00015 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47262 * 180.02562 * 20 19 18 22 22 F 1.39903 * 109.46909 * 60.00063 * 21 20 19 23 23 F 1.39893 * 109.47010 * 180.02562 * 21 20 19 24 24 F 1.39900 * 109.47054 * 300.00518 * 21 20 19 25 25 N 1.32410 * 120.94775 * 0.02562 * 18 17 16 26 26 C 1.31666 * 121.79788 * 359.97438 * 25 18 17 27 27 H 1.08994 * 109.47307 * 69.16452 * 1 2 3 28 28 H 1.09008 * 109.46721 * 189.15790 * 1 2 3 29 29 H 1.08999 * 109.47088 * 309.15940 * 1 2 3 30 30 H 1.09004 * 109.47148 * 240.00132 * 2 1 3 31 31 H 1.09001 * 109.47293 * 120.00407 * 2 1 3 32 32 H 1.09001 * 109.46925 * 29.99776 * 4 3 2 33 33 H 1.08997 * 109.46964 * 149.99946 * 4 3 2 34 34 H 0.97002 * 119.99429 * 179.97438 * 8 7 5 35 35 H 1.08002 * 120.82294 * 0.04277 * 16 15 13 36 36 H 1.08007 * 120.37128 * 179.97438 * 17 16 15 37 37 H 1.09000 * 109.47464 * 300.00279 * 20 19 18 38 38 H 1.09002 * 109.47118 * 60.00303 * 20 19 18 39 39 H 1.08001 * 119.68574 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1061 2.1272 -1.2578 5 6 3.4642 1.9135 -1.8748 6 1 4.1893 1.2846 -1.3798 7 6 3.7806 2.5201 -3.0719 8 7 2.8974 3.2855 -3.6749 9 14 5.4639 2.2547 -3.8372 10 1 6.2675 1.3588 -2.9672 11 1 5.3063 1.6338 -5.1768 12 1 6.1563 3.5611 -3.9754 13 6 2.3868 1.9657 1.1572 14 8 2.6930 3.1422 1.1736 15 6 2.4186 1.1774 2.4048 16 6 3.5114 1.2722 3.2793 17 6 3.4954 0.5153 4.4325 18 6 2.4049 -0.3102 4.6894 19 8 2.3834 -1.0555 5.8208 20 6 1.2376 -1.8834 6.0307 21 6 1.3920 -2.6431 7.3498 22 9 1.5067 -1.7297 8.4033 23 9 0.2706 -3.4539 7.5549 24 9 2.5402 -3.4405 7.2970 25 7 1.3880 -0.3779 3.8440 26 6 1.3621 0.3268 2.7321 27 1 -0.3633 0.3655 -0.9604 28 1 -0.3633 -1.0147 0.1636 29 1 -0.3633 0.6489 0.7968 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.3358 1.7747 -1.9437 33 1 1.9593 3.1892 -1.0613 34 1 3.1203 3.7126 -4.5169 35 1 4.3446 1.9218 3.0553 36 1 4.3200 0.5629 5.1285 37 1 0.3431 -1.2620 6.0723 38 1 1.1480 -2.5947 5.2097 39 1 0.5150 0.2456 2.0671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103209065.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:48 Heat of formation + Delta-G solvation = -176.992723 kcal Electronic energy + Delta-G solvation = -28122.733266 eV Core-core repulsion = 23423.652106 eV Total energy + Delta-G solvation = -4699.081160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.53619 -48.09097 -47.98936 -41.09761 -39.42738 -37.85101 -35.58192 -32.98351 -32.71810 -31.61979 -30.38472 -29.79166 -27.22273 -24.62066 -24.29198 -23.25148 -23.11115 -22.31333 -19.51569 -19.12577 -19.07288 -18.42472 -18.24948 -17.05169 -16.78056 -16.49736 -16.46118 -15.41073 -15.14169 -14.92759 -14.86954 -14.70053 -14.44694 -14.32688 -14.16341 -14.15672 -13.89700 -13.77105 -13.54745 -13.46380 -13.04961 -12.68128 -12.33157 -12.18340 -12.08647 -11.75682 -11.70388 -11.27830 -10.95510 -10.85026 -10.64151 -10.24867 -10.09099 -10.04897 -9.70464 -9.17747 -8.68694 -8.49797 -7.80591 -6.11189 -4.16384 0.73791 1.02435 1.76828 2.58513 3.12912 3.25586 3.28249 3.33572 3.36698 3.52488 3.58424 3.77882 3.87824 3.99092 4.38616 4.56448 4.64455 4.68986 4.75758 4.94771 4.98024 5.20042 5.23683 5.37974 5.48959 5.60030 5.65422 5.88944 6.02893 6.07741 6.14435 6.38996 6.68857 6.96698 7.35005 7.42056 7.47386 7.84836 8.14849 8.24611 8.77098 8.93213 9.49077 10.96938 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.023824 B = 0.002418 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.983280 B =11576.354402 C =11851.690934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.095 3.905 3 N -0.587 5.587 4 C 0.245 3.755 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.554 3.446 14 O -0.532 6.532 15 C -0.195 4.195 16 C 0.007 3.993 17 C -0.183 4.183 18 C 0.323 3.677 19 O -0.292 6.292 20 C 0.027 3.973 21 C 0.463 3.537 22 F -0.175 7.175 23 F -0.171 7.171 24 F -0.175 7.175 25 N -0.543 5.543 26 C 0.155 3.845 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.154 0.846 36 H 0.149 0.851 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.244 -12.818 18.891 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.029 4.029 3 N -0.317 5.317 4 C 0.126 3.874 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.339 3.661 14 O -0.410 6.410 15 C -0.200 4.200 16 C -0.019 4.019 17 C -0.204 4.204 18 C 0.145 3.855 19 O -0.200 6.200 20 C -0.051 4.051 21 C 0.408 3.592 22 F -0.156 7.156 23 F -0.153 7.153 24 F -0.156 7.156 25 N -0.266 5.266 26 C -0.001 4.001 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.609 -12.671 19.147 23.635 hybrid contribution 1.398 0.120 -0.576 1.517 sum -4.212 -12.551 18.570 22.806 Atomic orbital electron populations 1.22363 0.96487 1.01632 1.02935 1.21671 0.93738 0.84349 1.03116 1.48212 1.61762 1.13303 1.08469 1.19350 0.97207 0.92859 0.77950 1.21454 0.99452 1.30076 1.05860 0.92350 1.24933 0.97378 0.94841 0.96874 1.69938 1.34484 1.31261 1.17479 0.86440 0.83943 0.78089 0.78941 1.19783 1.20918 1.20831 1.17818 0.78751 0.86770 0.82737 1.90785 1.48906 1.15495 1.85773 1.21196 0.97796 1.02020 0.99009 1.21527 0.96916 0.93541 0.89922 1.20958 0.99261 0.99911 1.00256 1.19791 0.90991 0.89508 0.85237 1.86146 1.40965 1.54868 1.37974 1.23608 0.91196 0.96152 0.94113 1.20121 0.74112 0.78256 0.86675 1.93236 1.95674 1.66346 1.60369 1.93228 1.52392 1.74136 1.95519 1.93236 1.50627 1.75122 1.96618 1.67283 1.26447 1.26937 1.05898 1.23332 0.97614 0.88165 0.90979 0.91219 0.91595 0.92485 0.89689 0.91257 0.94621 0.93498 0.92679 0.82873 0.83315 0.86765 0.86707 0.80351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 9.15 37.16 0.34 -1.80 16 2 C 0.10 1.44 5.60 -4.04 -0.02 1.41 16 3 N -0.59 -11.75 2.46 -176.26 -0.43 -12.18 16 4 C 0.25 6.11 5.22 -5.20 -0.03 6.08 16 5 C -0.53 -14.46 9.39 -34.44 -0.32 -14.79 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 9 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 C 0.55 11.12 7.29 -12.44 -0.09 11.03 16 14 O -0.53 -12.94 16.55 5.29 0.09 -12.85 16 15 C -0.19 -3.00 5.09 -104.82 -0.53 -3.54 16 16 C 0.01 0.09 9.84 -38.92 -0.38 -0.29 16 17 C -0.18 -2.09 10.02 -39.34 -0.39 -2.49 16 18 C 0.32 3.79 7.49 -16.96 -0.13 3.67 16 19 O -0.29 -3.06 9.99 -18.20 -0.18 -3.24 16 20 C 0.03 0.21 5.26 37.16 0.20 0.41 16 21 C 0.46 3.81 3.32 37.16 0.12 3.93 16 22 F -0.17 -1.65 17.26 2.25 0.04 -1.61 16 23 F -0.17 -1.36 17.32 2.25 0.04 -1.32 16 24 F -0.17 -1.65 17.26 2.25 0.04 -1.61 16 25 N -0.54 -6.55 9.18 -12.96 -0.12 -6.67 16 26 C 0.15 2.01 8.59 -17.14 -0.15 1.87 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.06 0.67 6.33 -51.93 -0.33 0.34 16 30 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 31 H 0.07 0.92 5.09 -51.93 -0.26 0.66 16 32 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.05 1.33 7.35 -51.93 -0.38 0.95 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.11 0.79 8.10 -51.93 -0.42 0.36 16 38 H 0.11 0.78 8.10 -51.93 -0.42 0.36 16 39 H 0.18 2.09 3.70 -52.49 -0.19 1.90 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -32.08 349.27 -5.13 -37.21 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -4.09 Total: -1.29 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -1.49 Total: 7.12 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.18 Total: -43.92 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.09 Total: -16.09 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.12 Total: -4.54 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.08 -5.13 -37.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209065.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.785 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds