Wall clock time and date at job start Tue Mar 31 2020 16:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46971 * 2 1 4 4 C 1.46497 * 120.00174 * 277.51451 * 3 2 1 5 5 C 1.50692 * 109.47072 * 269.99705 * 4 3 2 6 6 H 1.08003 * 120.00239 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99848 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99980 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99909 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47172 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47329 * 120.00167 * 9 7 5 12 12 H 1.48498 * 109.46801 * 240.00273 * 9 7 5 13 13 C 1.34776 * 119.99587 * 97.51180 * 3 2 1 14 14 O 1.21582 * 120.00135 * 185.70402 * 13 3 2 15 15 C 1.47613 * 120.00263 * 5.70625 * 13 3 2 16 16 C 1.40284 * 120.50041 * 134.57530 * 15 13 3 17 17 C 1.37952 * 118.35887 * 180.02562 * 16 15 13 18 18 C 1.39163 * 119.26549 * 359.97438 * 17 16 15 19 19 O 1.35502 * 119.52807 * 180.02562 * 18 17 16 20 20 C 1.42903 * 117.00015 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47262 * 180.02562 * 20 19 18 22 22 F 1.39903 * 109.46909 * 60.00063 * 21 20 19 23 23 F 1.39893 * 109.47010 * 180.02562 * 21 20 19 24 24 F 1.39900 * 109.47054 * 300.00518 * 21 20 19 25 25 N 1.32410 * 120.94775 * 0.02562 * 18 17 16 26 26 C 1.31666 * 121.79788 * 359.97438 * 25 18 17 27 27 H 1.08994 * 109.47307 * 69.16452 * 1 2 3 28 28 H 1.09008 * 109.46721 * 189.15790 * 1 2 3 29 29 H 1.08999 * 109.47088 * 309.15940 * 1 2 3 30 30 H 1.09004 * 109.47148 * 240.00132 * 2 1 3 31 31 H 1.09001 * 109.47293 * 120.00407 * 2 1 3 32 32 H 1.09001 * 109.46925 * 29.99776 * 4 3 2 33 33 H 1.08997 * 109.46964 * 149.99946 * 4 3 2 34 34 H 0.97002 * 119.99429 * 179.97438 * 8 7 5 35 35 H 1.08002 * 120.82294 * 0.04277 * 16 15 13 36 36 H 1.08007 * 120.37128 * 179.97438 * 17 16 15 37 37 H 1.09000 * 109.47464 * 300.00279 * 20 19 18 38 38 H 1.09002 * 109.47118 * 60.00303 * 20 19 18 39 39 H 1.08001 * 119.68574 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1061 2.1272 -1.2578 5 6 3.4642 1.9135 -1.8748 6 1 4.1893 1.2846 -1.3798 7 6 3.7806 2.5201 -3.0719 8 7 2.8974 3.2855 -3.6749 9 14 5.4639 2.2547 -3.8372 10 1 6.2675 1.3588 -2.9672 11 1 5.3063 1.6338 -5.1768 12 1 6.1563 3.5611 -3.9754 13 6 2.3868 1.9657 1.1572 14 8 2.6930 3.1422 1.1736 15 6 2.4186 1.1774 2.4048 16 6 3.5114 1.2722 3.2793 17 6 3.4954 0.5153 4.4325 18 6 2.4049 -0.3102 4.6894 19 8 2.3834 -1.0555 5.8208 20 6 1.2376 -1.8834 6.0307 21 6 1.3920 -2.6431 7.3498 22 9 1.5067 -1.7297 8.4033 23 9 0.2706 -3.4539 7.5549 24 9 2.5402 -3.4405 7.2970 25 7 1.3880 -0.3779 3.8440 26 6 1.3621 0.3268 2.7321 27 1 -0.3633 0.3655 -0.9604 28 1 -0.3633 -1.0147 0.1636 29 1 -0.3633 0.6489 0.7968 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.3358 1.7747 -1.9437 33 1 1.9593 3.1892 -1.0613 34 1 3.1203 3.7126 -4.5169 35 1 4.3446 1.9218 3.0553 36 1 4.3200 0.5629 5.1285 37 1 0.3431 -1.2620 6.0723 38 1 1.1480 -2.5947 5.2097 39 1 0.5150 0.2456 2.0671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103209065.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:48 Heat of formation + Delta-G solvation = -198.372970 kcal Electronic energy + Delta-G solvation = -28123.660383 eV Core-core repulsion = 23423.652106 eV Total energy + Delta-G solvation = -4700.008277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.20211 -48.74374 -48.68398 -42.13692 -40.71773 -38.95531 -37.15257 -34.97097 -33.73933 -32.70042 -31.70233 -30.72174 -29.03006 -25.85430 -25.34532 -24.66109 -24.11663 -23.58135 -20.58232 -20.29247 -19.74269 -19.22213 -19.01640 -18.66630 -18.29616 -17.82417 -17.30926 -16.99286 -16.32744 -16.14834 -15.99401 -15.58783 -15.55678 -15.11939 -15.00246 -14.85073 -14.83435 -14.79169 -14.68371 -14.53607 -14.30330 -14.18663 -13.73789 -13.49677 -13.29683 -13.07462 -12.85424 -12.67127 -12.62742 -12.45048 -12.18025 -11.95120 -11.69433 -11.22010 -11.10918 -10.65003 -10.64335 -9.73354 -9.50048 -8.22842 -6.37283 -0.32286 0.02998 1.03447 1.37627 1.39705 1.51144 1.72393 1.86896 2.19826 2.40976 2.59209 2.64407 2.90328 2.93563 3.07519 3.24689 3.47619 3.69373 3.93932 3.95986 3.97958 4.05956 4.12775 4.33164 4.46023 4.54398 4.65895 4.86406 4.94676 5.01470 5.07755 5.09373 5.23519 5.39109 5.55348 5.78364 5.81219 6.05197 6.47512 6.63949 6.72929 7.22157 7.37866 8.84633 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.023824 B = 0.002418 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.983280 B =11576.354402 C =11851.690934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.091 3.909 3 N -0.591 5.591 4 C 0.261 3.739 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.266 1.266 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.551 3.449 14 O -0.589 6.589 15 C -0.217 4.217 16 C 0.003 3.997 17 C -0.174 4.174 18 C 0.330 3.670 19 O -0.294 6.294 20 C 0.023 3.977 21 C 0.468 3.532 22 F -0.182 7.182 23 F -0.168 7.168 24 F -0.182 7.182 25 N -0.536 5.536 26 C 0.168 3.832 27 H 0.052 0.948 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.030 0.970 33 H 0.002 0.998 34 H 0.267 0.733 35 H 0.151 0.849 36 H 0.176 0.824 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.116 -15.188 20.286 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.031 4.031 3 N -0.321 5.321 4 C 0.140 3.860 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.195 1.195 12 H -0.208 1.208 13 C 0.339 3.661 14 O -0.471 6.471 15 C -0.223 4.223 16 C -0.023 4.023 17 C -0.194 4.194 18 C 0.152 3.848 19 O -0.201 6.201 20 C -0.053 4.053 21 C 0.414 3.586 22 F -0.164 7.164 23 F -0.150 7.150 24 F -0.163 7.163 25 N -0.259 5.259 26 C 0.012 3.988 27 H 0.072 0.928 28 H 0.123 0.877 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.048 0.952 33 H 0.020 0.980 34 H 0.076 0.924 35 H 0.169 0.831 36 H 0.194 0.806 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -5.502 -15.104 20.570 26.107 hybrid contribution 1.310 0.788 -0.875 1.761 sum -4.192 -14.317 19.695 24.707 Atomic orbital electron populations 1.22318 0.93942 1.04133 1.02323 1.21968 0.95790 0.81487 1.03887 1.48195 1.61926 1.14955 1.07019 1.18796 0.96214 0.91051 0.79967 1.21726 1.00276 1.30043 1.06212 0.92774 1.25827 1.01293 0.94429 0.97414 1.70052 1.36513 1.32078 1.17985 0.85382 0.79086 0.78001 0.78431 1.19064 1.19537 1.20800 1.18489 0.77190 0.86437 0.83998 1.90738 1.51365 1.18109 1.86873 1.20804 1.00162 1.03712 0.97619 1.21578 0.96447 0.93918 0.90363 1.21145 0.99970 0.98730 0.99567 1.19967 0.90676 0.88968 0.85193 1.86137 1.42104 1.54797 1.37094 1.23844 0.90746 0.96405 0.94339 1.20120 0.73887 0.78054 0.86573 1.93225 1.95707 1.66617 1.60848 1.93238 1.52174 1.74044 1.95498 1.93226 1.51128 1.75359 1.96636 1.67369 1.26491 1.26579 1.05468 1.23388 0.96931 0.87162 0.91328 0.92847 0.87663 0.91907 0.90499 0.88844 0.95235 0.97975 0.92370 0.83123 0.80611 0.85300 0.85078 0.79121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 9.15 71.98 0.66 -3.17 16 2 C 0.09 2.66 5.60 86.38 0.48 3.15 16 3 N -0.59 -24.35 2.46 -829.84 -2.04 -26.39 16 4 C 0.26 13.66 5.22 85.63 0.45 14.11 16 5 C -0.54 -30.61 9.39 25.60 0.24 -30.37 16 6 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.54 5.46 84.66 0.46 1.00 16 8 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 9 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 C 0.55 22.82 7.29 86.72 0.63 23.45 16 14 O -0.59 -30.31 16.55 -3.98 -0.07 -30.37 16 15 C -0.22 -6.57 5.09 -20.00 -0.10 -6.67 16 16 C 0.00 0.07 9.84 22.70 0.22 0.29 16 17 C -0.17 -3.51 10.02 22.42 0.22 -3.28 16 18 C 0.33 6.70 7.49 84.83 0.64 7.34 16 19 O -0.29 -5.17 9.99 -88.03 -0.88 -6.05 16 20 C 0.02 0.29 5.26 71.98 0.38 0.67 16 21 C 0.47 6.52 3.32 71.98 0.24 6.75 16 22 F -0.18 -3.05 17.26 44.97 0.78 -2.27 16 23 F -0.17 -2.26 17.32 44.97 0.78 -1.48 16 24 F -0.18 -3.02 17.26 44.97 0.78 -2.25 16 25 N -0.54 -11.20 9.18 -307.81 -2.82 -14.03 16 26 C 0.17 4.00 8.59 85.03 0.73 4.73 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.06 1.36 6.33 -2.39 -0.02 1.34 16 30 H 0.08 2.38 8.13 -2.39 -0.02 2.36 16 31 H 0.09 2.30 5.09 -2.39 -0.01 2.29 16 32 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 33 H 0.00 0.13 7.35 -2.39 -0.02 0.11 16 34 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 36 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.13 1.30 8.10 -2.39 -0.02 1.29 16 38 H 0.13 1.28 8.10 -2.39 -0.02 1.26 16 39 H 0.19 3.98 3.70 -2.91 -0.01 3.97 16 Total: -1.00 -72.19 349.27 5.19 -67.00 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.11 Total: 6.52 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 5.25 Total: 18.00 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -4.58 Total: -95.13 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.95 Total: -36.42 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 2.33 Total: -5.99 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.19 5.19 -67.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209065.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.371 kcal (2) G-P(sol) polarization free energy of solvation -72.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds