Wall clock time and date at job start Tue Mar 31 2020 16:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34960 * 125.97127 * 2 1 4 4 C 1.35253 * 107.86589 * 179.72804 * 3 2 1 5 5 C 1.40424 * 107.85670 * 0.42738 * 4 3 2 6 6 N 1.39992 * 125.97256 * 179.82727 * 5 4 3 7 7 C 1.46497 * 120.00240 * 359.71900 * 6 5 4 8 8 C 1.50693 * 109.47223 * 179.97438 * 7 6 5 9 9 O 1.21291 * 120.00084 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00312 * 179.97438 * 8 7 6 11 11 C 1.39926 * 120.00337 * 175.95852 * 10 8 7 12 12 C 1.38685 * 120.11636 * 34.42860 * 11 10 8 13 13 C 1.38219 * 120.02267 * 180.25169 * 12 11 10 14 14 C 1.38397 * 120.24812 * 359.73935 * 13 12 11 15 15 C 1.38079 * 120.23036 * 359.97438 * 14 13 12 16 16 C 1.38997 * 119.97715 * 0.02562 * 15 14 13 17 17 S 1.76203 * 120.12492 * 179.97438 * 16 15 14 18 18 C 1.76195 * 99.99710 * 6.86727 * 17 16 15 19 19 H 1.07993 * 120.00535 * 354.89210 * 18 17 16 20 20 C 1.38692 * 119.99924 * 174.89692 * 18 17 16 21 21 N 1.31655 * 120.00188 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99660 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47172 * 90.00276 * 22 20 18 24 24 H 1.48505 * 109.47019 * 210.00083 * 22 20 18 25 25 H 1.48499 * 109.47544 * 330.00014 * 22 20 18 26 26 N 1.31221 * 108.05237 * 359.56865 * 5 4 3 27 27 H 1.08990 * 109.46949 * 269.97621 * 1 2 3 28 28 H 1.09003 * 109.47138 * 29.97629 * 1 2 3 29 29 H 1.09004 * 109.46852 * 149.97685 * 1 2 3 30 30 H 1.07999 * 126.06998 * 0.02562 * 3 2 1 31 31 H 1.07995 * 126.07037 * 180.29682 * 4 3 2 32 32 H 0.97000 * 119.99591 * 179.71823 * 6 5 4 33 33 H 1.08996 * 109.47040 * 59.99823 * 7 6 5 34 34 H 1.09000 * 109.46960 * 299.99996 * 7 6 5 35 35 H 0.96998 * 119.99293 * 355.96745 * 10 8 7 36 36 H 1.08005 * 119.98535 * 359.97316 * 12 11 10 37 37 H 1.08003 * 119.87917 * 179.76915 * 13 12 11 38 38 H 1.08000 * 119.88035 * 179.97438 * 14 13 12 39 39 H 1.08002 * 120.01182 * 180.02562 * 15 14 13 40 40 H 0.97003 * 119.99687 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2577 1.0922 0.0000 4 6 3.5433 0.6719 0.0061 5 6 3.5372 -0.7323 0.0000 6 7 4.6666 -1.5595 0.0000 7 6 6.0073 -0.9688 0.0006 8 6 7.0398 -2.0664 0.0011 9 8 6.6902 -3.2279 0.0005 10 7 8.3517 -1.7576 0.0011 11 6 9.3098 -2.7738 0.0869 12 6 9.0763 -4.0027 -0.5119 13 6 10.0217 -5.0069 -0.4214 14 6 11.2060 -4.7900 0.2610 15 6 11.4518 -3.5685 0.8561 16 6 10.5076 -2.5520 0.7710 17 16 10.8169 -0.9919 1.5294 18 6 12.4876 -1.2250 2.0382 19 1 12.9629 -2.1859 1.9074 20 6 13.1924 -0.1746 2.6069 21 7 14.4406 -0.3489 2.9875 22 14 12.3705 1.4876 2.8327 23 1 11.7109 1.5372 4.1622 24 1 13.3930 2.5612 2.7470 25 1 11.3541 1.6861 1.7683 26 7 2.2879 -1.1335 0.0000 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.9248 2.1196 0.0004 31 1 4.4189 1.3040 0.0122 32 1 4.5615 -2.5238 -0.0003 33 1 6.1323 -0.3524 0.8907 34 1 6.1328 -0.3518 -0.8892 35 1 8.6317 -0.8308 -0.0583 36 1 8.1533 -4.1766 -1.0452 37 1 9.8358 -5.9643 -0.8854 38 1 11.9405 -5.5789 0.3284 39 1 12.3774 -3.4029 1.3874 40 1 14.9336 0.3860 3.3849 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122270205.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:23 Heat of formation + Delta-G solvation = 88.333066 kcal Electronic energy + Delta-G solvation = -24280.074432 eV Core-core repulsion = 20609.401025 eV Total energy + Delta-G solvation = -3670.673408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.19300 -40.29231 -38.04339 -35.73388 -34.56218 -32.76635 -32.50195 -30.45252 -30.35813 -29.51608 -27.29289 -26.03167 -25.69991 -22.61330 -22.21942 -21.39939 -20.40914 -20.08619 -18.54956 -17.70703 -17.13280 -16.67237 -16.16598 -15.89769 -15.65142 -15.45291 -15.30899 -14.86091 -14.21745 -14.08994 -13.96907 -13.63853 -13.44340 -13.30730 -12.95265 -12.76797 -12.72748 -12.65847 -12.35570 -11.99477 -11.42540 -11.29301 -11.15798 -10.71315 -10.61887 -10.47047 -10.15843 -9.89843 -9.66140 -9.48313 -8.98065 -8.87903 -8.85151 -7.87971 -7.80447 -6.84973 -6.54063 -4.30802 1.69806 1.81017 1.96348 2.16041 2.62523 2.71443 2.91931 3.01793 3.09829 3.18812 3.33895 3.57769 4.03273 4.31420 4.39158 4.43280 4.59452 4.65494 4.86472 4.87813 5.07772 5.11588 5.18174 5.33382 5.48937 5.52275 5.57897 5.59539 5.78093 6.01412 6.10130 6.16542 6.45041 6.72446 6.75925 6.86387 6.94874 6.99761 7.12042 7.50712 7.51309 7.55104 7.69602 7.96984 8.14729 8.28175 8.87039 10.53183 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.002792 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.056973 B =10024.655082 C =12037.222596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.381 5.381 3 C 0.077 3.923 4 C -0.309 4.309 5 C 0.344 3.656 6 N -0.709 5.709 7 C 0.123 3.877 8 C 0.509 3.491 9 O -0.523 6.523 10 N -0.654 5.654 11 C 0.123 3.877 12 C -0.103 4.103 13 C -0.141 4.141 14 C -0.113 4.113 15 C -0.120 4.120 16 C -0.080 4.080 17 S -0.053 6.053 18 C -0.533 4.533 19 H 0.111 0.889 20 C 0.099 3.901 21 N -0.864 5.864 22 Si 0.854 3.146 23 H -0.265 1.265 24 H -0.269 1.269 25 H -0.237 1.237 26 N -0.353 5.353 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.173 0.827 31 H 0.147 0.853 32 H 0.415 0.585 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.412 0.588 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.146 0.854 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.089 3.717 -7.392 22.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.164 5.164 3 C -0.070 4.070 4 C -0.342 4.342 5 C 0.086 3.914 6 N -0.354 5.354 7 C -0.006 4.006 8 C 0.296 3.704 9 O -0.399 6.399 10 N -0.299 5.299 11 C 0.022 3.978 12 C -0.125 4.125 13 C -0.164 4.164 14 C -0.133 4.133 15 C -0.145 4.145 16 C -0.196 4.196 17 S 0.198 5.802 18 C -0.680 4.680 19 H 0.128 0.872 20 C -0.112 4.112 21 N -0.499 5.499 22 Si 0.678 3.322 23 H -0.190 1.190 24 H -0.194 1.194 25 H -0.161 1.161 26 N -0.186 5.186 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.190 0.810 31 H 0.164 0.836 32 H 0.254 0.746 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.249 0.751 36 H 0.150 0.850 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.164 0.836 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.635 3.353 -7.028 23.937 hybrid contribution 1.435 0.606 0.150 1.565 sum -21.200 3.959 -6.879 22.637 Atomic orbital electron populations 1.21750 0.74373 1.04145 1.03034 1.47998 1.06041 1.03160 1.59173 1.22383 0.90699 0.93468 1.00484 1.21118 0.97502 0.93097 1.22444 1.19107 0.87175 0.89823 0.95316 1.43213 0.99606 1.08078 1.84497 1.20884 0.81310 0.94320 1.04074 1.20489 0.83180 0.90449 0.76312 1.90686 1.80286 1.20306 1.48577 1.43221 1.04603 1.10324 1.71738 1.17138 0.89404 0.89953 1.01315 1.20971 0.99778 0.92234 0.99488 1.20837 0.94489 0.98743 1.02350 1.21033 0.97034 0.96884 0.98395 1.21439 1.00140 0.92034 1.00893 1.21957 0.96340 1.00819 1.00495 1.82582 1.18990 1.12699 1.65891 1.22656 0.94401 1.03347 1.47588 0.87168 1.24803 0.94261 0.98784 0.93355 1.69922 1.08632 1.33325 1.37976 0.86819 0.80886 0.83550 0.80919 1.18979 1.19406 1.16070 1.77473 0.99367 1.06652 1.35106 0.91134 0.89730 0.89553 0.81020 0.83568 0.74625 0.88708 0.88948 0.75052 0.85006 0.86687 0.86658 0.83650 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.59 11.47 59.85 0.69 1.28 16 2 N -0.38 -3.83 4.01 -68.18 -0.27 -4.10 16 3 C 0.08 0.66 11.48 -17.24 -0.20 0.46 16 4 C -0.31 -3.20 10.11 -39.82 -0.40 -3.61 16 5 C 0.34 4.43 8.16 -154.55 -1.26 3.17 16 6 N -0.71 -8.91 5.74 -61.24 -0.35 -9.26 16 7 C 0.12 1.32 6.08 -5.20 -0.03 1.29 16 8 C 0.51 7.20 7.74 -10.99 -0.09 7.12 16 9 O -0.52 -8.89 13.08 5.55 0.07 -8.82 16 10 N -0.65 -9.85 5.03 -9.71 -0.05 -9.90 16 11 C 0.12 2.26 6.32 -83.45 -0.53 1.73 16 12 C -0.10 -1.81 8.70 -39.42 -0.34 -2.15 16 13 C -0.14 -2.33 10.04 -39.53 -0.40 -2.73 16 14 C -0.11 -1.97 10.03 -39.58 -0.40 -2.36 16 15 C -0.12 -2.46 9.26 -39.36 -0.36 -2.82 16 16 C -0.08 -1.65 6.12 -38.75 -0.24 -1.88 16 17 S -0.05 -1.17 18.50 -107.50 -1.99 -3.16 16 18 C -0.53 -14.06 9.62 30.90 0.30 -13.76 16 19 H 0.11 3.05 5.06 -52.49 -0.27 2.79 16 20 C 0.10 2.63 5.50 -17.46 -0.10 2.54 16 21 N -0.86 -24.21 13.97 55.49 0.78 -23.44 16 22 Si 0.85 19.20 27.73 -169.99 -4.71 14.48 16 23 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.24 -5.00 6.74 56.52 0.38 -4.62 16 26 N -0.35 -4.81 12.59 31.41 0.40 -4.41 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.15 1.22 7.90 -52.49 -0.41 0.81 16 32 H 0.41 5.74 7.56 -40.82 -0.31 5.43 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.41 5.46 7.95 -40.82 -0.32 5.14 16 36 H 0.13 2.25 6.19 -52.48 -0.32 1.93 16 37 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 38 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.15 3.22 4.95 -52.49 -0.26 2.96 16 40 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 355.03 15.07 5.35 5.35 Total: -1.00 -32.92 355.03 -8.58 -41.50 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -4.44 Total: 13.50 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -3.36 Total: -11.74 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.50 Total: -51.12 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.07 Total: -8.82 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.48 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -1.99 Total: -3.16 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.92 -8.58 -41.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122270205.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.830 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds