Wall clock time and date at job start Tue Mar 31 2020 16:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34960 * 125.97127 * 2 1 4 4 C 1.35253 * 107.86589 * 179.72804 * 3 2 1 5 5 C 1.40424 * 107.85670 * 0.42738 * 4 3 2 6 6 N 1.39992 * 125.97256 * 179.82727 * 5 4 3 7 7 C 1.46497 * 120.00240 * 359.71900 * 6 5 4 8 8 C 1.50693 * 109.47223 * 179.97438 * 7 6 5 9 9 O 1.21291 * 120.00084 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00312 * 179.97438 * 8 7 6 11 11 C 1.39926 * 120.00337 * 175.95852 * 10 8 7 12 12 C 1.38685 * 120.11636 * 34.42860 * 11 10 8 13 13 C 1.38219 * 120.02267 * 180.25169 * 12 11 10 14 14 C 1.38397 * 120.24812 * 359.73935 * 13 12 11 15 15 C 1.38079 * 120.23036 * 359.97438 * 14 13 12 16 16 C 1.38997 * 119.97715 * 0.02562 * 15 14 13 17 17 S 1.76203 * 120.12492 * 179.97438 * 16 15 14 18 18 C 1.76195 * 99.99710 * 6.86727 * 17 16 15 19 19 H 1.07993 * 120.00535 * 354.89210 * 18 17 16 20 20 C 1.38692 * 119.99924 * 174.89692 * 18 17 16 21 21 N 1.31655 * 120.00188 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99660 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47172 * 90.00276 * 22 20 18 24 24 H 1.48505 * 109.47019 * 210.00083 * 22 20 18 25 25 H 1.48499 * 109.47544 * 330.00014 * 22 20 18 26 26 N 1.31221 * 108.05237 * 359.56865 * 5 4 3 27 27 H 1.08990 * 109.46949 * 269.97621 * 1 2 3 28 28 H 1.09003 * 109.47138 * 29.97629 * 1 2 3 29 29 H 1.09004 * 109.46852 * 149.97685 * 1 2 3 30 30 H 1.07999 * 126.06998 * 0.02562 * 3 2 1 31 31 H 1.07995 * 126.07037 * 180.29682 * 4 3 2 32 32 H 0.97000 * 119.99591 * 179.71823 * 6 5 4 33 33 H 1.08996 * 109.47040 * 59.99823 * 7 6 5 34 34 H 1.09000 * 109.46960 * 299.99996 * 7 6 5 35 35 H 0.96998 * 119.99293 * 355.96745 * 10 8 7 36 36 H 1.08005 * 119.98535 * 359.97316 * 12 11 10 37 37 H 1.08003 * 119.87917 * 179.76915 * 13 12 11 38 38 H 1.08000 * 119.88035 * 179.97438 * 14 13 12 39 39 H 1.08002 * 120.01182 * 180.02562 * 15 14 13 40 40 H 0.97003 * 119.99687 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2577 1.0922 0.0000 4 6 3.5433 0.6719 0.0061 5 6 3.5372 -0.7323 0.0000 6 7 4.6666 -1.5595 0.0000 7 6 6.0073 -0.9688 0.0006 8 6 7.0398 -2.0664 0.0011 9 8 6.6902 -3.2279 0.0005 10 7 8.3517 -1.7576 0.0011 11 6 9.3098 -2.7738 0.0869 12 6 9.0763 -4.0027 -0.5119 13 6 10.0217 -5.0069 -0.4214 14 6 11.2060 -4.7900 0.2610 15 6 11.4518 -3.5685 0.8561 16 6 10.5076 -2.5520 0.7710 17 16 10.8169 -0.9919 1.5294 18 6 12.4876 -1.2250 2.0382 19 1 12.9629 -2.1859 1.9074 20 6 13.1924 -0.1746 2.6069 21 7 14.4406 -0.3489 2.9875 22 14 12.3705 1.4876 2.8327 23 1 11.7109 1.5372 4.1622 24 1 13.3930 2.5612 2.7470 25 1 11.3541 1.6861 1.7683 26 7 2.2879 -1.1335 0.0000 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.9248 2.1196 0.0004 31 1 4.4189 1.3040 0.0122 32 1 4.5615 -2.5238 -0.0003 33 1 6.1323 -0.3524 0.8907 34 1 6.1328 -0.3518 -0.8892 35 1 8.6317 -0.8308 -0.0583 36 1 8.1533 -4.1766 -1.0452 37 1 9.8358 -5.9643 -0.8854 38 1 11.9405 -5.5789 0.3284 39 1 12.3774 -3.4029 1.3874 40 1 14.9336 0.3860 3.3849 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122270205.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:23 Heat of formation + Delta-G solvation = 66.494006 kcal Electronic energy + Delta-G solvation = -24281.021445 eV Core-core repulsion = 20609.401025 eV Total energy + Delta-G solvation = -3671.620420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.95144 -41.50908 -39.40746 -36.62709 -35.84781 -34.76140 -33.20169 -31.94438 -31.18083 -30.70517 -28.22428 -28.00403 -26.41083 -24.01295 -23.57706 -22.21459 -21.43004 -21.05293 -20.22685 -18.70874 -18.36012 -17.71339 -17.68593 -17.14147 -16.88735 -16.66316 -16.22768 -15.90420 -15.53955 -15.40577 -15.09301 -14.80593 -14.48089 -14.41353 -14.20356 -13.91681 -13.68977 -13.64089 -13.32520 -13.13149 -13.07906 -12.95777 -12.82873 -12.34746 -11.62757 -11.40756 -11.38352 -11.35416 -11.20416 -10.93631 -10.81403 -10.54425 -9.63207 -9.30326 -8.62493 -8.56653 -8.52925 -6.29328 0.29055 0.46924 1.02187 1.13456 1.32468 1.37836 1.42356 1.50073 1.62566 2.01880 2.11788 2.19030 2.52023 2.72440 2.79945 2.91862 3.51739 3.89747 4.02960 4.15756 4.23791 4.32982 4.39015 4.46071 4.52982 4.62267 4.63235 4.72937 4.77439 4.82511 4.92887 4.99397 5.30189 5.35346 5.44406 5.55534 5.65539 5.70310 6.03679 6.10048 6.22227 6.33862 6.36900 6.63074 6.85315 6.97341 7.12390 8.56401 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.002792 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.056973 B =10024.655082 C =12037.222596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.386 5.386 3 C 0.089 3.911 4 C -0.330 4.330 5 C 0.325 3.675 6 N -0.718 5.718 7 C 0.132 3.868 8 C 0.512 3.488 9 O -0.551 6.551 10 N -0.652 5.652 11 C 0.130 3.870 12 C -0.112 4.112 13 C -0.124 4.124 14 C -0.115 4.115 15 C -0.140 4.140 16 C -0.108 4.108 17 S -0.037 6.037 18 C -0.553 4.553 19 H 0.080 0.920 20 C 0.044 3.956 21 N -0.912 5.912 22 Si 0.913 3.087 23 H -0.262 1.262 24 H -0.262 1.262 25 H -0.213 1.213 26 N -0.403 5.403 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.217 0.783 31 H 0.164 0.836 32 H 0.405 0.595 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.422 0.578 36 H 0.141 0.859 37 H 0.152 0.848 38 H 0.141 0.859 39 H 0.118 0.882 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.941 5.355 -8.530 25.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.169 5.169 3 C -0.059 4.059 4 C -0.362 4.362 5 C 0.067 3.933 6 N -0.362 5.362 7 C 0.005 3.995 8 C 0.301 3.699 9 O -0.429 6.429 10 N -0.298 5.298 11 C 0.029 3.971 12 C -0.133 4.133 13 C -0.146 4.146 14 C -0.135 4.135 15 C -0.165 4.165 16 C -0.224 4.224 17 S 0.212 5.788 18 C -0.700 4.700 19 H 0.098 0.902 20 C -0.162 4.162 21 N -0.548 5.548 22 Si 0.733 3.267 23 H -0.187 1.187 24 H -0.186 1.186 25 H -0.136 1.136 26 N -0.237 5.237 27 H 0.098 0.902 28 H 0.138 0.862 29 H 0.099 0.901 30 H 0.234 0.766 31 H 0.182 0.818 32 H 0.241 0.759 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.261 0.739 36 H 0.158 0.842 37 H 0.170 0.830 38 H 0.159 0.841 39 H 0.136 0.864 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.522 4.974 -8.196 27.263 hybrid contribution 2.181 -0.109 0.417 2.223 sum -23.341 4.865 -7.779 25.079 Atomic orbital electron populations 1.22092 0.72202 1.05635 1.04132 1.48367 1.07337 1.02711 1.58456 1.23090 0.90000 0.94850 0.97933 1.21444 0.99147 0.92081 1.23539 1.19400 0.86975 0.90984 0.95899 1.43288 1.00284 1.07680 1.84994 1.20968 0.79395 0.92922 1.06240 1.21079 0.83083 0.90899 0.74845 1.90670 1.80611 1.21900 1.49727 1.43249 1.04552 1.10189 1.71766 1.17255 0.88953 0.91025 0.99910 1.21226 1.00359 0.92209 0.99507 1.21276 0.93137 0.99836 1.00384 1.21286 0.98177 0.96271 0.97753 1.21391 0.99465 0.93725 1.01884 1.22021 0.97779 1.00250 1.02348 1.82010 1.15513 1.14067 1.67224 1.22917 0.97077 1.02483 1.47540 0.90205 1.25751 0.94791 1.02725 0.92935 1.70033 1.10420 1.34749 1.39587 0.85932 0.80556 0.78706 0.81513 1.18674 1.18621 1.13621 1.77345 1.00375 1.09328 1.36613 0.90203 0.86228 0.90126 0.76645 0.81834 0.75872 0.86928 0.86011 0.73942 0.84181 0.83019 0.84074 0.86413 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.85 11.47 127.77 1.47 2.32 16 2 N -0.39 -6.95 4.01 -369.61 -1.48 -8.44 16 3 C 0.09 1.24 11.48 83.52 0.96 2.19 16 4 C -0.33 -6.01 10.11 22.11 0.22 -5.78 16 5 C 0.32 7.99 8.16 133.39 1.09 9.08 16 6 N -0.72 -17.37 5.74 -347.67 -2.00 -19.37 16 7 C 0.13 2.55 6.08 85.63 0.52 3.07 16 8 C 0.51 13.67 7.74 87.65 0.68 14.35 16 9 O -0.55 -18.20 13.08 -3.06 -0.04 -18.24 16 10 N -0.65 -18.61 5.03 -303.00 -1.52 -20.14 16 11 C 0.13 4.64 6.32 38.31 0.24 4.88 16 12 C -0.11 -3.71 8.70 22.37 0.19 -3.52 16 13 C -0.12 -3.80 10.04 22.30 0.22 -3.58 16 14 C -0.11 -3.88 10.03 22.27 0.22 -3.66 16 15 C -0.14 -5.86 9.26 22.41 0.21 -5.66 16 16 C -0.11 -4.49 6.12 22.81 0.14 -4.35 16 17 S -0.04 -1.65 18.50 -56.49 -1.04 -2.69 16 18 C -0.55 -30.30 9.62 67.93 0.65 -29.64 16 19 H 0.08 4.75 5.06 -2.91 -0.01 4.73 16 20 C 0.04 2.42 5.50 84.83 0.47 2.88 16 21 N -0.91 -53.04 13.97 21.63 0.30 -52.74 16 22 Si 0.91 39.46 27.73 68.60 1.90 41.36 16 23 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.21 -8.33 6.74 99.48 0.67 -7.66 16 26 N -0.40 -10.73 12.59 -54.55 -0.69 -11.41 16 27 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.22 0.84 8.06 -2.91 -0.02 0.81 16 31 H 0.16 2.20 7.90 -2.91 -0.02 2.18 16 32 H 0.40 11.20 7.56 -92.71 -0.70 10.50 16 33 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.42 10.36 7.95 -92.71 -0.74 9.62 16 36 H 0.14 4.50 6.19 -2.91 -0.02 4.48 16 37 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 39 H 0.12 5.59 4.95 -2.91 -0.01 5.58 16 40 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -75.28 355.03 2.35 -72.92 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: -0.36 Total: 36.15 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 7.29 Total: -17.41 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -5.39 Total: -112.10 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.04 Total: -18.24 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 1.90 Total: 41.36 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -1.04 Total: -2.69 kcal Total: -75.28 2.35 -72.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122270205.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.417 kcal (2) G-P(sol) polarization free energy of solvation -75.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds