Wall clock time and date at job start Tue Mar 31 2020 16:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 111.00219 * 2 1 4 4 C 1.50701 * 109.47226 * 66.04170 * 3 2 1 5 5 O 1.21303 * 119.99860 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00397 * 180.02562 * 4 3 2 7 7 C 1.37099 * 120.00192 * 180.02562 * 6 4 3 8 8 H 1.07994 * 119.99760 * 359.97438 * 7 6 4 9 9 C 1.38943 * 119.99799 * 179.97438 * 7 6 4 10 10 N 1.31418 * 120.00166 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00102 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47220 * 89.99790 * 11 9 7 13 13 H 1.48497 * 109.47339 * 209.99947 * 11 9 7 14 14 H 1.48504 * 109.46730 * 330.00312 * 11 9 7 15 15 C 1.46896 * 111.00211 * 236.04323 * 2 1 3 16 16 C 1.50703 * 109.47122 * 293.95789 * 15 2 1 17 17 C 1.38290 * 119.97179 * 269.97607 * 16 15 2 18 18 C 1.38246 * 120.11140 * 180.02562 * 17 16 15 19 19 C 1.38169 * 120.05594 * 359.67998 * 18 17 16 20 20 C 1.38709 * 119.93896 * 0.61802 * 19 18 17 21 21 O 1.35905 * 120.05570 * 179.67527 * 20 19 18 22 22 C 1.42901 * 116.99604 * 359.72908 * 21 20 19 23 23 F 1.39904 * 109.47113 * 60.00000 * 22 21 20 24 24 F 1.39901 * 109.46966 * 180.02562 * 22 21 20 25 25 F 1.39902 * 109.46987 * 299.99856 * 22 21 20 26 26 C 1.38119 * 119.97324 * 90.00132 * 16 15 2 27 27 H 1.08998 * 109.47715 * 183.95082 * 1 2 3 28 28 H 1.08999 * 109.47801 * 303.95972 * 1 2 3 29 29 H 1.09007 * 109.46843 * 63.95776 * 1 2 3 30 30 H 1.08992 * 109.47207 * 186.04091 * 3 2 1 31 31 H 1.08998 * 109.46978 * 306.04604 * 3 2 1 32 32 H 0.96998 * 119.99150 * 359.97438 * 6 4 3 33 33 H 0.97001 * 119.99910 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.46921 * 173.96294 * 15 2 1 35 35 H 1.08994 * 109.47356 * 53.95621 * 15 2 1 36 36 H 1.08001 * 119.94690 * 0.02562 * 17 16 15 37 37 H 1.07997 * 119.97049 * 179.97438 * 18 17 16 38 38 H 1.07997 * 120.02760 * 180.29730 * 19 18 17 39 39 H 1.08006 * 120.02943 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0053 1.4453 2.1411 6 7 2.0180 3.3202 1.5233 7 6 1.6922 3.9348 2.7048 8 1 1.1299 3.3989 3.4550 9 6 2.0855 5.2470 2.9367 10 7 2.7694 5.8993 2.0235 11 14 1.6411 6.0847 4.5462 12 1 2.7177 5.8481 5.5412 13 1 1.4890 7.5443 4.3190 14 1 0.3632 5.5275 5.0577 15 6 1.9955 -0.7660 -1.1375 16 6 1.6369 -2.2205 -0.9727 17 6 2.4948 -3.0716 -0.3005 18 6 2.1689 -4.4065 -0.1481 19 6 0.9817 -4.8920 -0.6617 20 6 0.1225 -4.0416 -1.3418 21 8 -1.0428 -4.5181 -1.8537 22 6 -1.3167 -5.9071 -1.6594 23 9 -1.3663 -6.1855 -0.2893 24 9 -2.5463 -6.2263 -2.2455 25 9 -0.3054 -6.6694 -2.2539 26 6 0.4520 -2.7023 -1.4938 27 1 -0.3634 -1.0252 0.0708 28 1 -0.3635 0.5740 0.8523 29 1 -0.3633 0.4512 -0.9234 30 1 3.0797 1.3443 -0.1081 31 1 1.5611 1.9273 -0.8309 32 1 2.5234 3.8013 0.8495 33 1 3.0443 6.8153 2.1857 34 1 3.0798 -0.6612 -1.1754 35 1 1.5612 -0.3873 -2.0627 36 1 3.4208 -2.6930 0.1062 37 1 2.8408 -5.0693 0.3769 38 1 0.7254 -5.9338 -0.5383 39 1 -0.2174 -2.0373 -2.0194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128306856.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:29 Heat of formation + Delta-G solvation = -192.148384 kcal Electronic energy + Delta-G solvation = -27827.595920 eV Core-core repulsion = 23127.857562 eV Total energy + Delta-G solvation = -4699.738359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.75944 -48.48429 -48.34931 -40.56611 -38.84079 -38.02505 -36.12898 -33.87130 -31.79628 -31.22019 -30.72766 -27.86844 -27.07469 -26.26038 -24.73020 -22.98839 -22.84451 -21.46194 -19.50215 -19.47013 -19.24019 -19.10625 -17.84710 -16.93382 -16.50922 -16.09828 -15.67558 -15.53199 -15.21539 -15.13758 -14.81573 -14.79369 -14.73807 -14.62913 -14.54550 -14.43949 -14.27308 -13.76146 -13.61889 -13.53388 -13.33999 -12.73508 -12.23859 -12.08426 -11.94871 -11.59831 -11.49642 -11.40332 -11.25930 -11.05900 -10.93493 -10.39413 -10.21991 -9.47665 -9.16806 -8.75136 -8.47082 -7.98103 -7.86771 -6.41816 -3.82526 0.96963 1.06829 1.18803 2.51945 3.17866 3.26502 3.30979 3.34003 3.46166 3.68725 3.90436 4.09366 4.29679 4.40122 4.48229 4.74324 4.84809 5.03299 5.08695 5.16444 5.24799 5.41665 5.45608 5.69072 5.69804 5.75567 5.80599 5.94799 5.97179 6.09195 6.15751 6.27440 6.39696 6.56009 6.71578 7.22645 7.32410 7.55352 8.06472 8.61937 9.18336 9.54461 10.06435 10.75943 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.027624 B = 0.002079 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.355575 B =13464.901992 C =13761.908704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.513 5.513 3 C 0.045 3.955 4 C 0.444 3.556 5 O -0.576 6.576 6 N -0.565 5.565 7 C -0.298 4.298 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.089 3.911 16 C -0.032 4.032 17 C -0.110 4.110 18 C -0.080 4.080 19 C -0.193 4.193 20 C 0.098 3.902 21 O -0.311 6.311 22 C 0.604 3.396 23 F -0.165 7.165 24 F -0.134 7.134 25 F -0.167 7.167 26 C -0.116 4.116 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.015 0.985 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.392 0.608 33 H 0.271 0.729 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.387 -21.392 -11.666 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.236 5.236 3 C -0.086 4.086 4 C 0.229 3.771 5 O -0.460 6.460 6 N -0.201 5.201 7 C -0.427 4.427 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.039 4.039 16 C -0.033 4.033 17 C -0.129 4.129 18 C -0.098 4.098 19 C -0.212 4.212 20 C 0.056 3.944 21 O -0.231 6.231 22 C 0.513 3.487 23 F -0.147 7.147 24 F -0.115 7.115 25 F -0.149 7.149 26 C -0.135 4.135 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.033 0.967 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.225 0.775 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.740 -21.742 -10.752 24.410 hybrid contribution -0.239 0.782 -0.339 0.885 sum -2.980 -20.961 -11.092 23.901 Atomic orbital electron populations 1.22628 0.86587 1.02259 1.01482 1.61590 1.08953 1.12775 1.40305 1.21884 1.00736 0.88624 0.97324 1.19713 0.85491 0.82930 0.88923 1.90497 1.43843 1.64620 1.47073 1.41865 1.49484 1.10744 1.18052 1.19691 1.32901 0.95427 0.94713 0.87923 1.25255 0.96859 0.96648 0.99210 1.69613 1.38149 1.12270 1.34355 0.85864 0.79105 0.78045 0.81314 1.20400 1.20961 1.19435 1.21135 1.00981 0.89028 0.92725 1.19602 0.92727 0.95639 0.95337 1.21151 1.00571 0.92845 0.98311 1.20950 0.95414 0.95747 0.97730 1.21462 0.96879 0.99801 1.03046 1.18608 0.83939 0.93953 0.97862 1.86413 1.40276 1.21263 1.75144 1.19350 0.75318 0.79369 0.74659 1.93311 1.96063 1.93554 1.31732 1.93304 1.42315 1.91558 1.84319 1.93295 1.60803 1.76728 1.84058 1.20317 0.97972 0.91559 1.03625 0.91924 0.88476 0.96664 0.89244 0.93304 0.77497 0.91895 0.89331 0.93724 0.84828 0.84963 0.85217 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.78 60.06 0.53 0.82 16 2 N -0.51 -8.24 4.49 -245.83 -1.10 -9.34 16 3 C 0.05 0.78 5.45 -4.98 -0.03 0.75 16 4 C 0.44 10.27 7.47 -10.98 -0.08 10.19 16 5 O -0.58 -15.33 13.91 5.54 0.08 -15.26 16 6 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 7 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 10 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 11 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 15 C 0.09 1.07 5.12 -4.98 -0.03 1.04 16 16 C -0.03 -0.38 4.88 -104.64 -0.51 -0.89 16 17 C -0.11 -1.19 9.70 -39.56 -0.38 -1.57 16 18 C -0.08 -0.79 10.04 -39.60 -0.40 -1.19 16 19 C -0.19 -2.02 8.26 -39.43 -0.33 -2.35 16 20 C 0.10 1.12 6.48 -39.22 -0.25 0.87 16 21 O -0.31 -3.43 10.37 -19.44 -0.20 -3.63 16 22 C 0.60 5.72 3.42 101.05 0.35 6.07 16 23 F -0.16 -1.60 15.55 2.25 0.04 -1.57 16 24 F -0.13 -1.21 17.53 2.25 0.04 -1.17 16 25 F -0.17 -1.50 15.58 2.25 0.04 -1.47 16 26 C -0.12 -1.33 7.90 -39.43 -0.31 -1.64 16 27 H 0.06 0.95 6.17 -51.93 -0.32 0.63 16 28 H 0.10 1.93 5.83 -51.93 -0.30 1.63 16 29 H 0.01 0.22 8.14 -51.92 -0.42 -0.21 16 30 H 0.09 1.35 7.93 -51.93 -0.41 0.94 16 31 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 32 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 33 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.09 0.93 7.87 -51.93 -0.41 0.52 16 35 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.13 1.20 5.10 -52.49 -0.27 0.93 16 39 H 0.14 1.43 8.03 -52.48 -0.42 1.01 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -30.70 344.06 -6.05 -36.76 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.07 Total: 8.12 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.69 Total: 4.22 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.44 Total: -47.12 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.12 Total: -18.89 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.11 Total: -4.20 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.70 -6.05 -36.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128306856.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.393 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds