Wall clock time and date at job start Tue Mar 31 2020 16:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 111.00219 * 2 1 4 4 C 1.50701 * 109.47226 * 66.04170 * 3 2 1 5 5 O 1.21303 * 119.99860 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00397 * 180.02562 * 4 3 2 7 7 C 1.37099 * 120.00192 * 180.02562 * 6 4 3 8 8 H 1.07994 * 119.99760 * 359.97438 * 7 6 4 9 9 C 1.38943 * 119.99799 * 179.97438 * 7 6 4 10 10 N 1.31418 * 120.00166 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00102 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47220 * 89.99790 * 11 9 7 13 13 H 1.48497 * 109.47339 * 209.99947 * 11 9 7 14 14 H 1.48504 * 109.46730 * 330.00312 * 11 9 7 15 15 C 1.46896 * 111.00211 * 236.04323 * 2 1 3 16 16 C 1.50703 * 109.47122 * 293.95789 * 15 2 1 17 17 C 1.38290 * 119.97179 * 269.97607 * 16 15 2 18 18 C 1.38246 * 120.11140 * 180.02562 * 17 16 15 19 19 C 1.38169 * 120.05594 * 359.67998 * 18 17 16 20 20 C 1.38709 * 119.93896 * 0.61802 * 19 18 17 21 21 O 1.35905 * 120.05570 * 179.67527 * 20 19 18 22 22 C 1.42901 * 116.99604 * 359.72908 * 21 20 19 23 23 F 1.39904 * 109.47113 * 60.00000 * 22 21 20 24 24 F 1.39901 * 109.46966 * 180.02562 * 22 21 20 25 25 F 1.39902 * 109.46987 * 299.99856 * 22 21 20 26 26 C 1.38119 * 119.97324 * 90.00132 * 16 15 2 27 27 H 1.08998 * 109.47715 * 183.95082 * 1 2 3 28 28 H 1.08999 * 109.47801 * 303.95972 * 1 2 3 29 29 H 1.09007 * 109.46843 * 63.95776 * 1 2 3 30 30 H 1.08992 * 109.47207 * 186.04091 * 3 2 1 31 31 H 1.08998 * 109.46978 * 306.04604 * 3 2 1 32 32 H 0.96998 * 119.99150 * 359.97438 * 6 4 3 33 33 H 0.97001 * 119.99910 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.46921 * 173.96294 * 15 2 1 35 35 H 1.08994 * 109.47356 * 53.95621 * 15 2 1 36 36 H 1.08001 * 119.94690 * 0.02562 * 17 16 15 37 37 H 1.07997 * 119.97049 * 179.97438 * 18 17 16 38 38 H 1.07997 * 120.02760 * 180.29730 * 19 18 17 39 39 H 1.08006 * 120.02943 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0053 1.4453 2.1411 6 7 2.0180 3.3202 1.5233 7 6 1.6922 3.9348 2.7048 8 1 1.1299 3.3989 3.4550 9 6 2.0855 5.2470 2.9367 10 7 2.7694 5.8993 2.0235 11 14 1.6411 6.0847 4.5462 12 1 2.7177 5.8481 5.5412 13 1 1.4890 7.5443 4.3190 14 1 0.3632 5.5275 5.0577 15 6 1.9955 -0.7660 -1.1375 16 6 1.6369 -2.2205 -0.9727 17 6 2.4948 -3.0716 -0.3005 18 6 2.1689 -4.4065 -0.1481 19 6 0.9817 -4.8920 -0.6617 20 6 0.1225 -4.0416 -1.3418 21 8 -1.0428 -4.5181 -1.8537 22 6 -1.3167 -5.9071 -1.6594 23 9 -1.3663 -6.1855 -0.2893 24 9 -2.5463 -6.2263 -2.2455 25 9 -0.3054 -6.6694 -2.2539 26 6 0.4520 -2.7023 -1.4938 27 1 -0.3634 -1.0252 0.0708 28 1 -0.3635 0.5740 0.8523 29 1 -0.3633 0.4512 -0.9234 30 1 3.0797 1.3443 -0.1081 31 1 1.5611 1.9273 -0.8309 32 1 2.5234 3.8013 0.8495 33 1 3.0443 6.8153 2.1857 34 1 3.0798 -0.6612 -1.1754 35 1 1.5612 -0.3873 -2.0627 36 1 3.4208 -2.6930 0.1062 37 1 2.8408 -5.0693 0.3769 38 1 0.7254 -5.9338 -0.5383 39 1 -0.2174 -2.0373 -2.0194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128306856.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:29 Heat of formation + Delta-G solvation = -212.727987 kcal Electronic energy + Delta-G solvation = -27828.488319 eV Core-core repulsion = 23127.857562 eV Total energy + Delta-G solvation = -4700.630757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.50778 -49.22542 -49.09822 -41.39459 -40.34581 -39.15652 -37.38949 -35.83065 -33.26533 -32.69714 -31.54556 -29.34095 -28.11232 -27.09639 -26.51272 -24.01372 -23.79256 -22.43762 -20.95117 -20.29089 -20.22482 -19.98448 -19.82360 -17.92317 -17.56447 -17.31612 -16.73238 -16.55428 -16.42877 -16.25260 -16.08108 -15.86649 -15.59417 -15.52101 -15.42388 -15.38794 -15.24847 -15.19830 -15.05541 -14.72574 -14.30114 -13.85431 -13.64262 -13.46631 -13.10360 -12.98639 -12.82549 -12.61800 -12.53820 -12.39488 -12.32995 -12.11117 -12.00860 -11.43474 -10.26089 -10.00867 -9.96354 -9.57240 -9.17063 -8.44223 -5.92280 0.13619 0.25818 0.41706 1.39090 1.42768 1.55076 1.75074 2.09680 2.29293 2.47509 2.71056 2.89868 3.03933 3.23123 3.47587 3.62323 3.64966 3.95811 4.01442 4.27074 4.28703 4.31350 4.40005 4.54276 4.55843 4.60141 4.72607 4.76308 4.94258 5.01952 5.19477 5.29037 5.34979 5.43594 5.56580 5.88218 5.93023 6.08174 6.19294 6.64341 7.16491 7.60655 8.17106 8.73155 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.027624 B = 0.002079 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.355575 B =13464.901992 C =13761.908704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.531 5.531 3 C 0.058 3.942 4 C 0.442 3.558 5 O -0.615 6.615 6 N -0.576 5.576 7 C -0.330 4.330 8 H 0.077 0.923 9 C -0.013 4.013 10 N -0.921 5.921 11 Si 0.990 3.010 12 H -0.271 1.271 13 H -0.271 1.271 14 H -0.274 1.274 15 C 0.092 3.908 16 C -0.044 4.044 17 C -0.118 4.118 18 C -0.080 4.080 19 C -0.197 4.197 20 C 0.085 3.915 21 O -0.320 6.320 22 C 0.608 3.392 23 F -0.166 7.166 24 F -0.131 7.131 25 F -0.163 7.163 26 C -0.124 4.124 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.396 0.604 33 H 0.277 0.723 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.144 0.856 37 H 0.158 0.842 38 H 0.140 0.860 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.573 -21.959 -12.399 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.256 5.256 3 C -0.073 4.073 4 C 0.229 3.771 5 O -0.501 6.501 6 N -0.213 5.213 7 C -0.459 4.459 8 H 0.095 0.905 9 C -0.213 4.213 10 N -0.562 5.562 11 Si 0.814 3.186 12 H -0.197 1.197 13 H -0.196 1.196 14 H -0.199 1.199 15 C -0.034 4.034 16 C -0.045 4.045 17 C -0.136 4.136 18 C -0.098 4.098 19 C -0.216 4.216 20 C 0.043 3.957 21 O -0.240 6.240 22 C 0.518 3.482 23 F -0.148 7.148 24 F -0.112 7.112 25 F -0.145 7.145 26 C -0.143 4.143 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.135 0.865 31 H 0.089 0.911 32 H 0.230 0.770 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.079 0.921 36 H 0.162 0.838 37 H 0.176 0.824 38 H 0.158 0.842 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.914 -22.319 -11.517 25.188 hybrid contribution -0.510 0.844 -0.144 0.997 sum -2.424 -21.475 -11.660 24.557 Atomic orbital electron populations 1.22437 0.87223 1.02084 1.00407 1.61505 1.08644 1.12321 1.43099 1.21763 1.02487 0.89102 0.93949 1.20824 0.83602 0.82166 0.90501 1.90478 1.45134 1.65391 1.49144 1.41934 1.50193 1.11615 1.17592 1.19622 1.34257 0.96348 0.95710 0.90470 1.25993 0.96396 0.96651 1.02257 1.69670 1.38279 1.12670 1.35580 0.84966 0.78605 0.77396 0.77608 1.19674 1.19608 1.19919 1.21203 1.02024 0.88517 0.91686 1.19648 0.93121 0.95628 0.96100 1.21389 1.00919 0.93261 0.98035 1.21265 0.95452 0.95857 0.97195 1.21679 0.96968 1.00262 1.02691 1.18777 0.84275 0.94286 0.98376 1.86387 1.40337 1.22051 1.75268 1.19253 0.75433 0.78961 0.74600 1.93308 1.96082 1.93515 1.31881 1.93310 1.42193 1.91473 1.84268 1.93302 1.60653 1.76531 1.83976 1.20428 0.98170 0.91835 1.03885 0.91164 0.92739 0.94868 0.86519 0.91146 0.76971 0.91376 0.87448 0.92086 0.83772 0.82445 0.84250 0.84231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 8.78 127.69 1.12 1.97 16 2 N -0.53 -16.25 4.49 -931.68 -4.18 -20.43 16 3 C 0.06 1.88 5.45 85.56 0.47 2.35 16 4 C 0.44 20.57 7.47 87.66 0.66 21.22 16 5 O -0.62 -33.66 13.91 -3.10 -0.04 -33.71 16 6 N -0.58 -29.08 5.29 -306.98 -1.62 -30.71 16 7 C -0.33 -18.60 9.68 84.04 0.81 -17.79 16 8 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 9 C -0.01 -0.71 5.50 84.92 0.47 -0.25 16 10 N -0.92 -49.33 13.05 21.66 0.28 -49.05 16 11 Si 0.99 42.89 29.55 68.60 2.03 44.91 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 C 0.09 1.97 5.12 85.56 0.44 2.41 16 16 C -0.04 -0.95 4.88 -19.88 -0.10 -1.05 16 17 C -0.12 -2.29 9.70 22.28 0.22 -2.08 16 18 C -0.08 -1.40 10.04 22.26 0.22 -1.18 16 19 C -0.20 -3.81 8.26 22.37 0.18 -3.62 16 20 C 0.08 1.84 6.48 22.51 0.15 1.98 16 21 O -0.32 -6.78 10.37 -92.48 -0.96 -7.74 16 22 C 0.61 10.90 3.42 113.37 0.39 11.29 16 23 F -0.17 -3.05 15.55 44.97 0.70 -2.35 16 24 F -0.13 -2.26 17.53 44.97 0.79 -1.47 16 25 F -0.16 -2.72 15.58 44.97 0.70 -2.02 16 26 C -0.12 -2.69 7.90 22.37 0.18 -2.51 16 27 H 0.07 2.09 6.17 -2.39 -0.01 2.08 16 28 H 0.05 2.22 5.83 -2.39 -0.01 2.21 16 29 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.12 3.19 7.93 -2.39 -0.02 3.17 16 31 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 32 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 33 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 34 H 0.11 1.89 7.87 -2.39 -0.02 1.87 16 35 H 0.06 1.13 8.06 -2.39 -0.02 1.11 16 36 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.14 2.34 5.10 -2.91 -0.01 2.33 16 39 H 0.14 2.78 8.03 -2.91 -0.02 2.76 16 Total: -1.00 -66.86 344.06 3.28 -63.58 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.39 Total: 26.23 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 5.20 Total: 12.75 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -5.52 Total: -100.19 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -1.00 Total: -41.45 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 2.19 Total: -5.84 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -66.86 3.28 -63.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128306856.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.149 kcal (2) G-P(sol) polarization free energy of solvation -66.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds